Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Reverse (-)

508825 .. 509869

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000126.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggcagggactctagtgcaaactcaaatcctacagcaaaagctctacgatggagcccaattcctggcggttctatctccaagtcctgcggttcccttcactctctctgctttgaccgaagccatcgaagcccaaacaccccaccttgagtccctgctccaaaaatccagggctgtactcctcaggggatttccgatcaattcagcctccgacttcaacgatgtcgttgaggctttcggcttcgaggagcttccctacgttggcagagccgcctctcggaccaatgttgtgggtcaggtttttactgccactgagtccccgcctgatcagaagatttcatttcaccatgaaatggctcaggtatattcgcatgatcattgcattgtcgtttctttgttttcagtgaagtggttgataattgttatacgacatgtcgttacaggtgcacgagttttgcctccctttttctgtgaagtagagcctggaagtgggggagaaactcccattgttcctaagtatggcctcgggcttccttcaattgatgttgggcctccaaactccttgttgggtgaaactgatagtctagtctcgggcttccttcacctgatgttggtcctccaagctaccttgttgggtgaaactgatagtctcgtctcgggcttccttcacctgatgttgggcctccaagctaccttgttggatgaaactgatagtctcgtctcgggcttccttcacctgatgttaggcctccaagctaccttgttggatgaaactaatagcctcgcctcgggcttccttcacctgatgatggacctccaagctccttgttgggtgaaattgatagcctcgcctcgggcttcctttacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

289

Amino Acids

31.16

Weight (kDa)

4.96

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	64, 352
AciI	CCGC	4 cut(s)	68, 89, 270, 320
AfaI	GTAC	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	217, 537
AjnI	CCWGG	3 cut(s)	63, 167, 481
AluBI	AGCT	6 cut(s)	43, 250, 623, 689, 755, 821
AluI	AGCT	6 cut(s)	43, 250, 623, 689, 755, 821
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	5 cut(s)	592, 653, 658, 719, 724
Alw44I	GTGCAC	1 cut(s)	444
Ama87I	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
AoxI	GGCC	4 cut(s)	520, 548, 679, 745
ApaLI	GTGCAC	1 cut(s)	444
AspS9I	GGNCC	5 cut(s)	279, 548, 613, 679, 811
AsuHPI	GGTGA	8 cut(s)	335, 581, 593, 647, 659, 725, 791, 844
AvaI	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
AvaII	GGWCC	3 cut(s)	279, 613, 811
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	448
BccI	CCATC	3 cut(s)	44, 131, 802
BciT130I	CCWGG	3 cut(s)	65, 169, 483
BclI	TGATCA	2 cut(s)	325, 373
BcoDI	GTCTC	5 cut(s)	592, 653, 658, 719, 724
BfaI	CTAG	2 cut(s)	14, 584
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	65, 169, 483
Bme18I	GGWCC	3 cut(s)	279, 613, 811
BmeT110I	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
BmgT120I	GGNCC	5 cut(s)	279, 548, 613, 679, 811
BmiI	GGNNCC	2 cut(s)	55, 93
BmrFI	CCNGG	3 cut(s)	65, 169, 483
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	168, 523, 786, 851
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	65, 169, 483
BseDI	CCNNGG	4 cut(s)	168, 523, 786, 851
BseGI	GGATG	2 cut(s)	706, 772
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	196, 303, 371
BseRI	GAGGAG	2 cut(s)	170, 260
BseSI	GKGCMC	1 cut(s)	448
BshFI	GGCC	4 cut(s)	522, 550, 681, 747
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
BslFI	GGGAC	3 cut(s)	22, 136, 301
BsmAI	GTCTC	5 cut(s)	592, 653, 658, 719, 724
BsmBI	CGTCTC	2 cut(s)	658, 724
BsmFI	GGGAC	3 cut(s)	22, 136, 301
BsnI	GGCC	4 cut(s)	522, 550, 681, 747
BsoBI	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
Bsp1286I	GDGCHC	2 cut(s)	58, 448
Bsp143I	GATC	3 cut(s)	195, 325, 373
BspACI	CCGC	4 cut(s)	68, 89, 270, 320
BspANI	GGCC	4 cut(s)	522, 550, 681, 747
BspCNI	CTCAG	3 cut(s)	195, 304, 370
BspLI	GGNNCC	2 cut(s)	55, 93
BsrDI	GCAATG	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	168, 523, 786, 851
BssMI	GATC	3 cut(s)	195, 325, 373
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	65, 169, 483
BstDEI	CTNAG	4 cut(s)	182, 312, 357, 513
BstF5I	GGATG	2 cut(s)	706, 772
BstKTI	GATC	3 cut(s)	198, 328, 376
BstMAI	GTCTC	5 cut(s)	592, 653, 658, 719, 724
BstMBI	GATC	3 cut(s)	195, 325, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	65, 169, 483
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	63, 167, 481
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	522, 550, 681, 747
BtsCI	GGATG	2 cut(s)	706, 772
BtsIMutI	CAGTG	2 cut(s)	309, 408
Cfr13I	GGNCC	5 cut(s)	279, 548, 613, 679, 811
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	3 cut(s)	347, 371, 431
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	4 cut(s)	182, 312, 357, 513
DpnI	GATC	3 cut(s)	197, 327, 375
DpnII	GATC	3 cut(s)	195, 325, 373
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	279, 613, 811
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	6 cut(s)	524, 589, 655, 721, 787, 852
EcoRII	CCWGG	3 cut(s)	63, 167, 481
EcoT38I	GRGCYC	1 cut(s)	58
Esp3I	CGTCTC	2 cut(s)	658, 724
FaeI	CATG	3 cut(s)	350, 374, 434
FaiI	YATR	6 cut(s)	348, 364, 372, 425, 432, 519
FaqI	GGGAC	3 cut(s)	22, 136, 301
FatI	CATG	3 cut(s)	346, 370, 430
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	2 cut(s)	325, 373
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	713, 779
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	14, 584
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	522, 550, 681, 747
Hin1II	CATG	3 cut(s)	350, 374, 434
HinfI	GANTC	3 cut(s)	10, 149, 314
HphI	GGTGA	8 cut(s)	335, 581, 593, 647, 659, 725, 791, 844
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	4 cut(s)	195, 211, 279, 330
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	6 cut(s)	106, 543, 608, 674, 740, 806
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	19, 381, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	182, 312, 357, 513
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	350, 374, 434
Ksp22I	TGATCA	2 cut(s)	325, 373
Kzo9I	GATC	3 cut(s)	195, 325, 373
LmnI	GCTCC	4 cut(s)	53, 162, 247, 826
MaeI	CTAG	2 cut(s)	14, 584
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	197, 327, 375
MboI	GATC	3 cut(s)	195, 325, 373
MboII	GAAGA	1 cut(s)	343
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	2 cut(s)	58, 448
MluCI	AATT	5 cut(s)	59, 199, 417, 537, 836
MlyI	GAGTC	3 cut(s)	4, 158, 323
MmeI	TCCRAC	3 cut(s)	234, 678, 744
MspR9I	CCNGG	3 cut(s)	65, 169, 483
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	3 cut(s)	65, 169, 483
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	195, 325, 373
NlaIII	CATG	3 cut(s)	350, 374, 434
NlaIV	GGNNCC	2 cut(s)	55, 93
NspI	RCATGY	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	747
PciI	ACATGT	1 cut(s)	430
PflMI	CCANNNNNTGG	2 cut(s)	64, 352
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	3 cut(s)	4, 157, 322
PpsI	GAGTC	3 cut(s)	4, 157, 322
PscI	ACATGT	1 cut(s)	430
Psp6I	CCWGG	3 cut(s)	63, 167, 481
PspGI	CCWGG	3 cut(s)	63, 167, 481
PspN4I	GGNNCC	2 cut(s)	55, 93
PspPI	GGNCC	5 cut(s)	279, 548, 613, 679, 811
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	195, 325, 373
Sau96I	GGNCC	5 cut(s)	279, 548, 613, 679, 811
SchI	GAGTC	3 cut(s)	4, 158, 323
ScrFI	CCNGG	3 cut(s)	65, 169, 483
SduI	GDGCHC	2 cut(s)	58, 448
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	3 cut(s)	279, 613, 811
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	59, 199, 417, 537, 836
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	4 cut(s)	68, 89, 270, 320
SspMI	CTAG	2 cut(s)	14, 584
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	3 cut(s)	63, 167, 481
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	126, 243
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	59, 199, 417, 537, 836
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	272
TscAI	CASTG	2 cut(s)	316, 408
TspDTI	ATGAA	4 cut(s)	327, 363, 717, 783
TspRI	CASTG	2 cut(s)	316, 408
Van91I	CCANNNNNTGG	2 cut(s)	64, 352
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	3 cut(s)	279, 613, 811
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	2 cut(s)	14, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.