RchiOBHm_Chr2g0140571

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005847
Physical Location & Seq
Forward (+)
58055558 .. 58056946
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51098

Sequence Viewer

Length: 975 bp
ATGGCAGGAACTCTGGTGCAAACTCAAATCCCACAGCAAAAGCTCTACGACGGAGTTCAGTTCCCGGCGGTTGTATCTCCGAGCCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCCAAACCATCGGAGCCCAAAGACCGTACCTTGAGGCCCAGCTCCGGCAAGCCGGGGCTGTACTCCTCAGGGACTTTCCCTTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCTCGGACCAACGTCGTGGGTCGGGTTTTTACCGCCAATGAGTCCCCGCCCGACCAGAAGATTCCGTTTCACCACGAAATGGCTCAGGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCCATTGTTCTGAGTCACATTGTGTATGAGAGGATGAAAGAGAAGTACCCGGAATTTGTCGAAAAATTGGAAGAACATGGATTGTTATATACTCGGGTTTTAGGCGAAGGCGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCTACATTCTTGACCAAAGATAAGAACATAGCTGAGCAGAGGGCTGCTAAGCTTGGCATGAAGTTGGAATGGTTGGAAGATGGAGTGAAATCAATAATGGGGCCAATCCCGGCCGTCAAATACGACAGCACAAGGCAGCGTAAGATTTGGTTCAACAGCATGGTAGCTGCATACACAGGCTGGGAAGATGCAAGGAATGATCCTGTAAAGGCTGTTACCTTTGGCAATGGCAACCCATTGCCGGCGGATGTCATCTACGACTGCTTGAAGATTCTTGAGGAGGAAAGTGTTGCCATTCCTTGGCAGAAGGGTGATGTTTTGCTGTTGGATAATTTGGCTGTCCTTCACTCTAGGAAATCGTTCACTCCACCTCGCAGGGTGCTGGCTTCACTTTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

324

Amino Acids

35.98

Weight (kDa)

5.53

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 319 9.1e-33 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 352, 873
AccI GTMKAC 1 cut(s) 575
AciI CCGC 7 cut(s) 68, 89, 264, 270, 306, 320, 818
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 2 cut(s) 559, 684
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 143, 177, 473
AfiI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
AgsI TTSAA 4 cut(s) 199, 217, 727, 841
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 6 cut(s) 43, 157, 250, 605, 625, 740
AluI AGCT 6 cut(s) 43, 157, 250, 605, 625, 740
AlwI GGATC 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 5 cut(s) 150, 231, 559, 674, 684
ApeKI GCWGC 3 cut(s) 617, 709, 740
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 932
AspS9I GGNCC 3 cut(s) 151, 279, 674
AsuC2I CCSGG 4 cut(s) 65, 169, 476, 683
AsuHPI GGTGA 2 cut(s) 335, 896
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 86, 133
BbvI GCAGC 3 cut(s) 604, 721, 727
BccI CCATC 2 cut(s) 131, 647
BceAI ACGGC 2 cut(s) 546, 671
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 4 cut(s) 65, 169, 476, 683
BfaI CTAG 1 cut(s) 924
BisI GCNGC 4 cut(s) 270, 618, 710, 741
BlpI GCTNAGC 2 cut(s) 606, 621
BlsI GCNGC 4 cut(s) 271, 619, 711, 742
Bme1390I CCNGG 5 cut(s) 65, 169, 408, 476, 683
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 151, 279, 674
BmiI GGNNCC 6 cut(s) 93, 130, 268, 363, 405, 675
BmrFI CCNGG 5 cut(s) 65, 169, 408, 476, 683
BmsI GCATC 1 cut(s) 751
BoxI GACNNNNGTC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 2 cut(s) 606, 621
BpuEI CTTGAG 2 cut(s) 167, 869
BpuMI CCSGG 4 cut(s) 65, 169, 476, 683
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 168, 275, 562, 872
Bsc4I CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
Bse118I RCCGGY 1 cut(s) 814
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 805, 809
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 4 cut(s) 168, 275, 562, 872
BseGI GGATG 2 cut(s) 465, 826
BseLI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
BseMI GCAATG 2 cut(s) 805, 809
BseMII CTCAG 4 cut(s) 196, 371, 428, 597
BseRI GAGGAG 3 cut(s) 170, 260, 866
BseX3I CGGCCG 1 cut(s) 684
BseXI GCAGC 3 cut(s) 604, 721, 727
BseYI CCCAGC 2 cut(s) 153, 753
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 5 cut(s) 152, 233, 561, 676, 686
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 6 cut(s) 65, 160, 168, 476, 683, 815
BslFI GGGAC 2 cut(s) 200, 301
BslI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
BsmFI GGGAC 2 cut(s) 200, 301
BsnI GGCC 5 cut(s) 152, 233, 561, 676, 686
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 86, 133
Bsp143I GATC 1 cut(s) 772
Bsp1720I GCTNAGC 2 cut(s) 606, 621
BspACI CCGC 7 cut(s) 68, 89, 264, 270, 306, 320, 818
BspANI GGCC 5 cut(s) 152, 233, 561, 676, 686
BspCNI CTCAG 4 cut(s) 195, 370, 429, 598
BspLI GGNNCC 6 cut(s) 93, 130, 268, 363, 405, 675
BspPI GGATC 1 cut(s) 767
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 805, 809
BsrFI RCCGGY 1 cut(s) 814
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 4 cut(s) 168, 275, 562, 872
BssMI GATC 1 cut(s) 772
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 165, 816, 957
BstDEI CTNAG 5 cut(s) 182, 357, 437, 606, 621
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 2 cut(s) 465, 826
BstKTI GATC 1 cut(s) 775
BstMBI GATC 1 cut(s) 772
BstMCI CGRYCG 1 cut(s) 687
BstNI CCWGG 1 cut(s) 408
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 5 cut(s) 63, 167, 406, 474, 681
BstV1I GCAGC 3 cut(s) 604, 721, 727
BstXI CCANNNNNNTGG 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 684
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 152, 233, 561, 676, 686
BtgI CCRYGG 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 2 cut(s) 465, 826
Cac8I GCNNGC 3 cut(s) 165, 816, 957
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 3 cut(s) 151, 279, 674
Csp6I GTAC 3 cut(s) 142, 176, 472
CviAII CATG 3 cut(s) 503, 631, 733
CviQI GTAC 3 cut(s) 142, 176, 472
DdeI CTNAG 5 cut(s) 182, 357, 437, 606, 621
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 559, 684
EagI CGGCCG 1 cut(s) 684
EciI GGCGGA 2 cut(s) 279, 833
EclXI CGGCCG 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 86, 133
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 872
EcoT38I GRGCYC 2 cut(s) 86, 133
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 3 cut(s) 506, 634, 736
FaiI YATR 9 cut(s) 258, 453, 504, 514, 516, 602, 632, 734, 745
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 200, 301
FatI CATG 3 cut(s) 502, 630, 732
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 4 cut(s) 270, 618, 710, 741
FokI GGATG 2 cut(s) 472, 833
FriOI GRGCYC 2 cut(s) 86, 133
Fsp4HI GCNGC 4 cut(s) 270, 618, 710, 741
FspBI CTAG 1 cut(s) 924
GluI GCNGC 4 cut(s) 270, 618, 710, 741
GsaI CCCAGC 2 cut(s) 157, 757
HaeIII GGCC 5 cut(s) 152, 233, 561, 676, 686
HapII CCGG 6 cut(s) 65, 160, 168, 476, 683, 815
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 506, 634, 736
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 314, 334, 439, 844
HpaII CCGG 6 cut(s) 65, 160, 168, 476, 683, 815
HphI GGTGA 2 cut(s) 335, 896
Hpy166II GTNNAC 2 cut(s) 576, 936
Hpy188I TCNGA 6 cut(s) 81, 128, 211, 279, 438, 555
Hpy188III TCNNGA 2 cut(s) 583, 848
Hpy8I GTNNAC 2 cut(s) 576, 936
Hpy99I CGWCG 4 cut(s) 53, 224, 227, 290
HpyAV CCTTC 7 cut(s) 106, 205, 244, 527, 555, 874, 926
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 4 cut(s) 19, 743, 764, 969
HpyF3I CTNAG 5 cut(s) 182, 357, 437, 606, 621
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 506, 634, 736
KroI GCCGGC 1 cut(s) 814
KroNI GCCGGC 1 cut(s) 816
Kzo9I GATC 1 cut(s) 772
LmnI GCTCC 5 cut(s) 128, 162, 247, 266, 403
Lsp1109I GCAGC 3 cut(s) 604, 721, 727
LweI GCATC 1 cut(s) 751
MaeI CTAG 1 cut(s) 924
MaeII ACGT 2 cut(s) 222, 285
MaeIII GTNAC 2 cut(s) 440, 787
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 6 cut(s) 343, 509, 540, 662, 770, 853
MhlI GDGCHC 2 cut(s) 86, 133
MluCI AATT 4 cut(s) 199, 479, 491, 904
MlyI GAGTC 2 cut(s) 323, 448
MmeI TCCRAC 4 cut(s) 234, 618, 627, 879
MroNI GCCGGC 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 932
MspI CCGG 6 cut(s) 65, 160, 168, 476, 683, 815
MspR9I CCNGG 5 cut(s) 65, 169, 408, 476, 683
MvaI CCWGG 1 cut(s) 408
NaeI GCCGGC 1 cut(s) 816
NciI CCSGG 4 cut(s) 65, 169, 476, 683
NdeII GATC 1 cut(s) 772
NgoMIV GCCGGC 1 cut(s) 814
NlaIII CATG 3 cut(s) 506, 634, 736
NlaIV GGNNCC 6 cut(s) 93, 130, 268, 363, 405, 675
NmuCI GTSAC 1 cut(s) 440
PceI AGGCCT 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 932
PfeI GAWTC 2 cut(s) 334, 844
PflMI CCANNNNNTGG 2 cut(s) 352, 873
PkrI GCNGC 4 cut(s) 271, 619, 711, 742
PleI GAGTC 2 cut(s) 322, 447
PpsI GAGTC 2 cut(s) 322, 447
PshAI GACNNNNGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 406
PspFI CCCAGC 2 cut(s) 153, 753
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 6 cut(s) 93, 130, 268, 363, 405, 675
PspPI GGNCC 3 cut(s) 151, 279, 674
RsaI GTAC 3 cut(s) 143, 177, 473
RsaNI GTAC 3 cut(s) 142, 176, 472
SatI GCNGC 4 cut(s) 270, 618, 710, 741
Sau3AI GATC 1 cut(s) 772
Sau96I GGNCC 3 cut(s) 151, 279, 674
SchI GAGTC 2 cut(s) 323, 448
ScrFI CCNGG 5 cut(s) 65, 169, 408, 476, 683
SduI GDGCHC 2 cut(s) 86, 133
SfaNI GCATC 1 cut(s) 751
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 146, 848
SmoI CTYRAG 2 cut(s) 146, 848
Sse9I AATT 4 cut(s) 199, 479, 491, 904
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 7 cut(s) 68, 89, 264, 270, 306, 320, 818
SspMI CTAG 1 cut(s) 924
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 5 cut(s) 63, 167, 406, 474, 681
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 2 cut(s) 243, 486
TasI AATT 4 cut(s) 199, 479, 491, 904
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 334, 844
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 3 cut(s) 617, 709, 740
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 476, 647
TspGWI ACGGA 2 cut(s) 66, 327
Van91I CCANNNNNTGG 2 cut(s) 352, 873
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 932
XspI CTAG 1 cut(s) 924
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.