Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Reverse (-)

4162087 .. 4164306

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGGGTAGTTTTGTGGAAATCCAAATCCCGCAGCAAAAGCTCTACAGCGGAATTCAATTCCCGGTAGTCATAACTCCGAGCCCCGCAGCTTCCTTCACTCTCTCTGCTTTCACCAAAACCATCCAAGCCCAGAAACCCTATCTGGAGGCCCAGCTCCGAAAATCAGGGGCCGTGCTCTTTAGGGGCTTTCCTGTCAATTCAGCCTCGGACTTCAACGACGTCGTCGAGGCTTCCGGCTTCGAGGAGTTTCCTTACGTCGGCGGAGCCGCTCCCCGGACTAACGTCGTGGGTCGGGTTTTTACCGCCAACGAGTCCCCGCCAGACCAGAAGATTCCATTTCACCACGAAATGGCTCAGGTGCCTGAGTACCCAGCGAAGTTGTTCTTCTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCCATTGTTCTGAGCCACATTGTGTACGAGAGGATGAAAGAGAGGTACCCAGAATTTGTTGACAAATTGGAGGAGCATGGTTTGATATATAACCGGGTTTTAGGCGAAGACGACGATCCTTCTTCTCCAATTGGCCGTGGCTGGAAGTCCACCTTCTTGACCAAAGACAAGAGCATAGCTGAGGAAAGGGCTGCTAAGCTGGGCATGAAGTTGGAATGGTTGGAGGATGGAGTGAAATCTATCATGGGGCCAATCCCAGCCATTAAATATGAAAGCACAAGGCGGCGGAAGATTTGGTTCAATAGCATGGTAGCCGCATATACAGGGTGGGAAGATGCAAGAAATGACCCTGTGAAGGCTGTCACCTTTGGAGATGGCAGCCCATTGCCCGCGGAAACCATCTACGACTGCCTGAAAGTTCTTGAAGAGGAAAGTGTTGCCATCCCTTGGCGCAAAGGCGATGTTTTACTGCTGGATAACTTGGCTGTCCTTCACTCCCGGAAATCGTTCAGTCCACCTCGCAGAGTCCTAGCTTCACTCTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

325

Amino Acids

36.12

Weight (kDa)

5.86

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	2 cut(s)	361, 471
AccB7I	CCANNNNNTGG	2 cut(s)	352, 873
AccBSI	CCGCTC	1 cut(s)	272
AccII	CGCG	1 cut(s)	818
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	54, 479
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	3 cut(s)	371, 452, 473
AfiI	CCNNNNNNNGG	6 cut(s)	260, 276, 352, 413, 781, 873
AgsI	TTSAA	4 cut(s)	59, 217, 727, 851
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	6 cut(s)	43, 92, 157, 605, 625, 959
AluI	AGCT	6 cut(s)	43, 92, 157, 605, 625, 959
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	4 cut(s)	150, 171, 559, 674
ApeKI	GCWGC	4 cut(s)	34, 89, 617, 804
ApoI	RAATTY	2 cut(s)	54, 479
Asp700I	GAANNNNTTC	2 cut(s)	383, 932
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	3 cut(s)	151, 171, 674
AsuC2I	CCSGG	4 cut(s)	65, 277, 521, 925
AsuHPI	GGTGA	3 cut(s)	106, 335, 781
BanI	GGYRCC	2 cut(s)	361, 471
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	46, 101, 604, 816
BccI	CCATC	5 cut(s)	131, 647, 794, 833, 875
BceAI	ACGGC	2 cut(s)	158, 546
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	4 cut(s)	65, 277, 521, 925
BfaI	CTAG	1 cut(s)	956
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	7 cut(s)	35, 90, 270, 618, 710, 741, 805
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	7 cut(s)	36, 91, 271, 619, 711, 742, 806
Bme1390I	CCNGG	5 cut(s)	65, 277, 408, 521, 925
BmgT120I	GGNCC	3 cut(s)	151, 171, 674
BmiI	GGNNCC	6 cut(s)	172, 268, 363, 405, 473, 675
BmrFI	CCNGG	5 cut(s)	65, 277, 408, 521, 925
BmsI	GCATC	1 cut(s)	751
BoxI	GACNNNNGTC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	2 cut(s)	357, 606
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuMI	CCSGG	4 cut(s)	65, 277, 521, 925
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	207, 275, 562, 816, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 276, 352, 413, 781, 873
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	5 cut(s)	207, 275, 562, 816, 872
BseGI	GGATG	4 cut(s)	123, 465, 658, 867
BseLI	CCNNNNNNNGG	6 cut(s)	260, 276, 352, 413, 781, 873
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	4 cut(s)	357, 371, 428, 597
BseRI	GAGGAG	2 cut(s)	260, 512
BseXI	GCAGC	4 cut(s)	46, 101, 604, 816
BseYI	CCCAGC	4 cut(s)	153, 373, 625, 682
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	4 cut(s)	152, 173, 561, 676
BshNI	GGYRCC	2 cut(s)	361, 471
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	5 cut(s)	65, 237, 277, 520, 925
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	6 cut(s)	260, 276, 352, 413, 781, 873
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	152, 173, 561, 676
Bsp1286I	GDGCHC	2 cut(s)	86, 180
Bsp143I	GATC	1 cut(s)	541
Bsp1720I	GCTNAGC	1 cut(s)	621
BspANI	GGCC	4 cut(s)	152, 173, 561, 676
BspCNI	CTCAG	4 cut(s)	358, 370, 429, 598
BspFNI	CGCG	1 cut(s)	818
BspLI	GGNNCC	6 cut(s)	172, 268, 363, 405, 473, 675
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	361, 471
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	809
BssECI	CCNNGG	5 cut(s)	207, 275, 562, 816, 872
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	5 cut(s)	357, 366, 437, 606, 621
BstDSI	CCRYGG	2 cut(s)	562, 816
BstF5I	GGATG	4 cut(s)	123, 465, 658, 867
BstFNI	CGCG	1 cut(s)	818
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	5 cut(s)	63, 275, 406, 519, 923
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	4 cut(s)	46, 101, 604, 816
BstV2I	GAAGAC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	152, 173, 561, 676
BtgI	CCRYGG	2 cut(s)	562, 816
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	4 cut(s)	123, 465, 658, 867
Cac8I	GCNNGC	1 cut(s)	816
CfoI	GCGC	1 cut(s)	879
Cfr13I	GGNCC	3 cut(s)	151, 171, 674
Cfr42I	CCGCGG	1 cut(s)	819
Csp6I	GTAC	3 cut(s)	370, 451, 472
CviAII	CATG	4 cut(s)	503, 631, 670, 733
CviQI	GTAC	3 cut(s)	370, 451, 472
DdeI	CTNAG	5 cut(s)	357, 366, 437, 606, 621
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	2 cut(s)	279, 727
Eco130I	CCWWGG	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	872
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	4 cut(s)	506, 634, 673, 736
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 563, 595
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	502, 630, 669, 732
FauI	CCCGC	4 cut(s)	39, 94, 327, 823
Fnu4HI	GCNGC	7 cut(s)	35, 90, 270, 618, 710, 741, 805
FokI	GGATG	4 cut(s)	110, 472, 665, 854
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	7 cut(s)	35, 90, 270, 618, 710, 741, 805
FspBI	CTAG	1 cut(s)	956
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	7 cut(s)	35, 90, 270, 618, 710, 741, 805
GsaI	CCCAGC	4 cut(s)	157, 377, 629, 686
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	4 cut(s)	152, 173, 561, 676
HapII	CCGG	5 cut(s)	65, 237, 277, 520, 925
HhaI	GCGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	506, 634, 673, 736
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	314, 334, 951
HpaII	CCGG	5 cut(s)	65, 237, 277, 520, 925
HphI	GGTGA	3 cut(s)	106, 335, 781
Hpy166II	GTNNAC	4 cut(s)	451, 487, 576, 941
Hpy188I	TCNGA	4 cut(s)	81, 161, 211, 438
Hpy188III	TCNNGA	3 cut(s)	146, 583, 848
Hpy8I	GTNNAC	4 cut(s)	451, 487, 576, 941
Hpy99I	CGWCG	6 cut(s)	224, 227, 230, 263, 290, 542
HpyAV	CCTTC	5 cut(s)	106, 555, 589, 775, 926
HpyCH4IV	ACGT	3 cut(s)	222, 258, 285
HpyCH4V	TGCA	2 cut(s)	764, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	5 cut(s)	357, 366, 437, 606, 621
HpySE526I	ACGT	3 cut(s)	222, 258, 285
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	506, 634, 673, 736
HspAI	GCGC	1 cut(s)	877
KpnI	GGTACC	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	819
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	5 cut(s)	162, 266, 277, 403, 499
Lsp1109I	GCAGC	4 cut(s)	46, 101, 604, 816
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	956
MaeII	ACGT	3 cut(s)	222, 258, 285
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	1 cut(s)	543
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	541
MboII	GAAGA	8 cut(s)	343, 379, 382, 540, 545, 727, 770, 863
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	86, 180
MluCI	AATT	6 cut(s)	54, 59, 199, 479, 491, 555
MlyI	GAGTC	2 cut(s)	323, 960
MmeI	TCCRAC	2 cut(s)	618, 627
MroXI	GAANNNNTTC	2 cut(s)	383, 932
MseI	TTAA	1 cut(s)	690
MspA1I	CMGCKG	2 cut(s)	51, 818
MspI	CCGG	5 cut(s)	65, 237, 277, 520, 925
MspR9I	CCNGG	5 cut(s)	65, 277, 408, 521, 925
MunI	CAATTG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	4 cut(s)	65, 277, 521, 925
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	4 cut(s)	506, 634, 673, 736
NlaIV	GGNNCC	6 cut(s)	172, 268, 363, 405, 473, 675
NmuCI	GTSAC	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	383, 932
PfeI	GAWTC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	2 cut(s)	352, 873
PfoI	TCCNGGA	1 cut(s)	923
PkrI	GCNGC	7 cut(s)	36, 91, 271, 619, 711, 742, 806
PleI	GAGTC	2 cut(s)	322, 959
PpsI	GAGTC	2 cut(s)	322, 959
PshAI	GACNNNNGTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	4 cut(s)	153, 373, 625, 682
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	6 cut(s)	172, 268, 363, 405, 473, 675
PspPI	GGNCC	3 cut(s)	151, 171, 674
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	3 cut(s)	371, 452, 473
RsaNI	GTAC	3 cut(s)	370, 451, 472
SacII	CCGCGG	1 cut(s)	819
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	7 cut(s)	35, 90, 270, 618, 710, 741, 805
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	3 cut(s)	151, 171, 674
SchI	GAGTC	2 cut(s)	323, 960
ScrFI	CCNGG	5 cut(s)	65, 277, 408, 521, 925
SduI	GDGCHC	2 cut(s)	86, 180
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	819
SgrBI	CCGCGG	1 cut(s)	819
Sse9I	AATT	6 cut(s)	54, 59, 199, 479, 491, 555
SspMI	CTAG	1 cut(s)	956
StyD4I	CCNGG	5 cut(s)	63, 275, 406, 519, 923
StyI	CCWWGG	1 cut(s)	872
TaiI	ACGT	3 cut(s)	225, 261, 288
TaqI	TCGA	2 cut(s)	228, 243
TasI	AATT	6 cut(s)	54, 59, 199, 479, 491, 555
TauI	GCSGC	3 cut(s)	272, 712, 743
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	4 cut(s)	34, 89, 617, 804
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	3 cut(s)	476, 647, 711
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	2 cut(s)	352, 873
XapI	RAATTY	2 cut(s)	54, 479
XmnI	GAANNNNTTC	2 cut(s)	383, 932
XspI	CTAG	1 cut(s)	956
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.