Rorug02G0363600

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005847
Physical Location & Seq
Forward (+)
46112856 .. 46114107
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0363600.1

Sequence Viewer

Length: 606 bp
ATGGCTAGGTCCCAACAGCGTTATCGCGGCGTCCGACAAAGGCATTGGGGTTCTTGGGTTTCTGAAATTCGCCACCCTTTACTAAAGACAAGAATTTGGCTAGGCACTTTCGAAACGGCGGAGGACGCAGCGCGAGCCTACGACGAAGCGGCGAGACTCATGTGCGGTCCAAAAGCACGTACCAATTTCCCGTTCAATCCCAACGACCACATGTCACATTCATCCCAGCTTCTCTCATCGGCTTTGATAGCAAAGCTTCACAAATGCAACATGGCCTCTCTACAAATGACGAAAAAACCAGCCCCAAAAGAGGAGCCCGTGCAACAAGCAGTGCTCCAGCAACAGTATATGCCCTCCGTCACTTCTAGTAGTAGCTGCATTGTCGAAAATAGCGGCTTTTCGGGGTTGGATTGGTCGGAGAAGAGGGAGTACGGTGGAGTTCAATGGGGTGAGGGGAATTGGGTTGGTGAGGTGGGTGTTCAAGTTGAGAATCATGATCAACATCAGGAGCTTTTTCAGCCGCTTGAGGAGGATCATATTGAGCAAATGATAGAGGAGTTGCTTGATTATGGGTACATTGAGCTTTGTCCCGGGGTTCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

5.61

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 7 - 56 2e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 27, 133
AciI CCGC 6 cut(s) 27, 119, 149, 165, 393, 521
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 2 cut(s) 66, 93
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 181, 431, 575
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 4 cut(s) 196, 443, 482, 599
AhdI GACNNNNNGTC 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 5 cut(s) 229, 256, 375, 511, 583
AluI AGCT 5 cut(s) 229, 256, 375, 511, 583
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 128, 375
ApoI RAATTY 2 cut(s) 66, 93
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 9, 167
AsuC2I CCSGG 2 cut(s) 591, 592
AsuHPI GGTGA 2 cut(s) 461, 479
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 2 cut(s) 9, 167
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 413, 445
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 140, 362
BceAI ACGGC 1 cut(s) 132
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 2 cut(s) 591, 592
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 3 cut(s) 6, 101, 366
BisI GCNGC 6 cut(s) 28, 129, 150, 376, 394, 521
BlsI GCNGC 6 cut(s) 29, 130, 151, 377, 395, 522
Bme1390I CCNGG 2 cut(s) 591, 592
Bme18I GGWCC 2 cut(s) 9, 167
BmeRI GACNNNNNGTC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 9, 167
BmiI GGNNCC 2 cut(s) 11, 315
BmrFI CCNGG 2 cut(s) 591, 592
BpmI CTGGAG 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 591, 592
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 590, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 590, 591
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 310
BseRI GAGGAG 3 cut(s) 326, 542, 569
BseXI GCAGC 2 cut(s) 140, 362
BseYI CCCAGC 1 cut(s) 225
Bsh1236I CGCG 2 cut(s) 27, 133
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 573
BsnI GGCC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 590
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 318, 336
Bsp143I GATC 2 cut(s) 496, 532
BspACI CCGC 6 cut(s) 27, 119, 149, 165, 393, 521
BspANI GGCC 1 cut(s) 275
BspFNI CGCG 2 cut(s) 27, 133
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 11, 315
BspPI GGATC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 590, 591
BssMI GATC 2 cut(s) 496, 532
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 345, 434
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 2 cut(s) 27, 133
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 499, 535
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 496, 532
BstMWI GCNNNNNNNGC 4 cut(s) 125, 134, 248, 517
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 589, 590
BstUI CGCG 2 cut(s) 27, 133
BstV1I GCAGC 2 cut(s) 140, 362
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 9, 167
Cfr9I CCCGGG 1 cut(s) 590
CseI GACGC 2 cut(s) 19, 134
Csp6I GTAC 3 cut(s) 180, 430, 574
CviAII CATG 4 cut(s) 160, 211, 271, 494
CviQI GTAC 3 cut(s) 180, 430, 574
DpnI GATC 2 cut(s) 498, 534
DpnII GATC 2 cut(s) 496, 532
DriI GACNNNNNGTC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 416
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 9, 167
Eco88I CYCGRG 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 4 cut(s) 163, 214, 274, 497
FaiI YATR 9 cut(s) 161, 212, 272, 348, 350, 495, 537, 570, 604
FaqI GGGAC 1 cut(s) 573
FatI CATG 4 cut(s) 159, 210, 270, 493
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 6 cut(s) 28, 129, 150, 376, 394, 521
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 6 cut(s) 28, 129, 150, 376, 394, 521
FspBI CTAG 3 cut(s) 6, 101, 366
GlaI GCGC 1 cut(s) 132
GluI GCNGC 6 cut(s) 28, 129, 150, 376, 394, 521
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 591
HgaI GACGC 2 cut(s) 19, 134
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 4 cut(s) 163, 214, 274, 497
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 156, 490
HpaII CCGG 1 cut(s) 591
HphI GGTGA 2 cut(s) 461, 479
Hpy188I TCNGA 3 cut(s) 35, 64, 418
Hpy188III TCNNGA 2 cut(s) 494, 506
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 345, 434
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 267, 322, 378
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 134, 248, 517
HpySE526I ACGT 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 4 cut(s) 163, 214, 274, 497
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 496, 532
LmnI GCTCC 3 cut(s) 313, 339, 508
LpnPI CCDG 4 cut(s) 239, 312, 350, 491
Lsp1109I GCAGC 2 cut(s) 140, 362
MaeI CTAG 3 cut(s) 6, 101, 366
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 213, 358
MalI GATC 2 cut(s) 498, 534
MboI GATC 2 cut(s) 496, 532
MboII GAAGA 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 318, 336
MluCI AATT 4 cut(s) 66, 93, 184, 457
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 3 cut(s) 58, 387, 396
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 591, 592
MvnI CGCG 2 cut(s) 27, 133
MwoI GCNNNNNNNGC 4 cut(s) 125, 134, 248, 517
NciI CCSGG 2 cut(s) 591, 592
NdeII GATC 2 cut(s) 496, 532
NlaIII CATG 4 cut(s) 163, 214, 274, 497
NlaIV GGNNCC 2 cut(s) 11, 315
NmuCI GTSAC 2 cut(s) 213, 358
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 493
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PfeI GAWTC 1 cut(s) 490
PkrI GCNGC 6 cut(s) 29, 130, 151, 377, 395, 522
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 9
PscI ACATGT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 11, 315
PspPI GGNCC 2 cut(s) 9, 167
PspPPI RGGWCCY 1 cut(s) 9
RsaI GTAC 3 cut(s) 181, 431, 575
RsaNI GTAC 3 cut(s) 180, 430, 574
SatI GCNGC 6 cut(s) 28, 129, 150, 376, 394, 521
Sau3AI GATC 2 cut(s) 496, 532
Sau96I GGNCC 2 cut(s) 9, 167
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 591, 592
SduI GDGCHC 2 cut(s) 318, 336
SetI ASST 8 cut(s) 11, 181, 231, 258, 377, 474, 513, 585
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 9, 167
SmaI CCCGGG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 4 cut(s) 66, 93, 184, 457
SsiI CCGC 6 cut(s) 27, 119, 149, 165, 393, 521
SspMI CTAG 3 cut(s) 6, 101, 366
StyD4I CCNGG 2 cut(s) 589, 590
TaaI ACNGT 2 cut(s) 345, 434
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 111, 384
TasI AATT 4 cut(s) 66, 93, 184, 457
TauI GCSGC 4 cut(s) 30, 152, 396, 523
TfiI GAWTC 1 cut(s) 490
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 2 cut(s) 213, 358
TseI GCWGC 2 cut(s) 128, 375
Tsp45I GTSAC 2 cut(s) 213, 358
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 346
TspMI CCCGGG 1 cut(s) 590
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 9, 167
XapI RAATTY 2 cut(s) 66, 93
XceI RCATGY 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 590
XspI CTAG 3 cut(s) 6, 101, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.