Rw2G033970

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005847
Physical Location & Seq
Forward (+)
55695247 .. 55696679
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033970.1

Sequence Viewer

Length: 738 bp
ATGGCAGGAACTCTGGTGCAAACTCAAATCCCACAGCAAAAGCTCTACGACGGAGTTCAGTTCCCGGCGGTTGTATCTCCGAGCCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCCAAACCATCGGAGCCCAAAGACCGTACCTTGAGGCCCAGCTCCGGCAATCCGGGGCTGTACTCCTCAGGGGCTTTCCGGTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCTCGGACCAACGTTGTGGGTCGGGTTTTTACCGCCAATGAGTCCCCGCCCGACCAGAAGATTCCGTTTCACCACGAAATGGCTCAGGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCCATTGTTCTGAGTCACATTGTGTATGAGAGGATGAAATTGAAGTACCCGGAATTCGTCGACAAATTGGAAGAGCATGGATTGTTGTATGCTCGGGTTTTAGGCGAAGGCGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCTACATTCTTGACCAAAGATAAGAACATAGCTGAGCAAAGGGCTGCTAAGCTTGGCATGAAGTTGGAATGGTTGGAAGATGGAGTGAAATCAATAATGGGCCAATCCCGGCCGTCAAATACGACAGCACAAGGCAGCGTAAGATTTGGTTCAACAGTATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

245

Amino Acids

26.87

Weight (kDa)

5.65

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 168 2e-19 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 2 cut(s) 486, 575
AciI CCGC 6 cut(s) 68, 89, 264, 270, 306, 320
AclI AACGTT 1 cut(s) 285
AcoI YGGCCR 2 cut(s) 559, 683
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 143, 177, 473
AfiI CCNNNNNNNGG 5 cut(s) 159, 260, 276, 352, 413
AgsI TTSAA 3 cut(s) 217, 469, 726
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 5 cut(s) 43, 157, 250, 605, 625
AluI AGCT 5 cut(s) 43, 157, 250, 605, 625
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 5 cut(s) 150, 231, 559, 673, 683
ApeKI GCWGC 2 cut(s) 617, 708
ApoI RAATTY 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 151, 279, 673
AsuC2I CCSGG 4 cut(s) 65, 169, 476, 682
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 86, 133
BbvI GCAGC 2 cut(s) 604, 720
BccI CCATC 2 cut(s) 131, 647
BceAI ACGGC 2 cut(s) 546, 670
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 4 cut(s) 65, 169, 476, 682
BisI GCNGC 3 cut(s) 270, 618, 709
BlpI GCTNAGC 2 cut(s) 606, 621
BlsI GCNGC 3 cut(s) 271, 619, 710
Bme1390I CCNGG 5 cut(s) 65, 169, 408, 476, 682
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 151, 279, 673
BmiI GGNNCC 5 cut(s) 93, 130, 268, 363, 405
BmrFI CCNGG 5 cut(s) 65, 169, 408, 476, 682
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 2 cut(s) 606, 621
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 4 cut(s) 65, 169, 476, 682
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 168, 275, 562
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 260, 276, 352, 413
Bse21I CCTNAGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 3 cut(s) 168, 275, 562
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 5 cut(s) 159, 260, 276, 352, 413
BseMII CTCAG 4 cut(s) 196, 371, 428, 597
BseRI GAGGAG 2 cut(s) 170, 260
BseX3I CGGCCG 1 cut(s) 683
BseXI GCAGC 2 cut(s) 604, 720
BseYI CCCAGC 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 686
BshFI GGCC 5 cut(s) 152, 233, 561, 675, 685
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 686
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 6 cut(s) 65, 160, 168, 194, 476, 682
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 5 cut(s) 159, 260, 276, 352, 413
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 5 cut(s) 152, 233, 561, 675, 685
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 86, 133
Bsp1720I GCTNAGC 2 cut(s) 606, 621
BspACI CCGC 6 cut(s) 68, 89, 264, 270, 306, 320
BspANI GGCC 5 cut(s) 152, 233, 561, 675, 685
BspCNI CTCAG 4 cut(s) 195, 370, 429, 598
BspLI GGNNCC 5 cut(s) 93, 130, 268, 363, 405
BspQI GCTCTTC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 168, 275, 562
BssNI GRCGYC 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 141, 730
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 222
BstDEI CTNAG 5 cut(s) 182, 357, 437, 606, 621
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 465
BstMCI CGRYCG 1 cut(s) 686
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 5 cut(s) 63, 167, 406, 474, 680
BstV1I GCAGC 2 cut(s) 604, 720
BstXI CCANNNNNNTGG 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 683
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 152, 233, 561, 675, 685
BtgI CCRYGG 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 151, 279, 673
Csp6I GTAC 3 cut(s) 142, 176, 472
CviAII CATG 2 cut(s) 503, 631
CviQI GTAC 3 cut(s) 142, 176, 472
DdeI CTNAG 5 cut(s) 182, 357, 437, 606, 621
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 559, 683
EagI CGGCCG 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 683
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 86, 133
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 683
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 86, 133
FaeI CATG 2 cut(s) 506, 634
FaiI YATR 7 cut(s) 258, 453, 504, 516, 602, 632, 733
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 502, 630
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 2 cut(s) 486, 575
Fnu4HI GCNGC 3 cut(s) 270, 618, 709
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 2 cut(s) 86, 133
Fsp4HI GCNGC 3 cut(s) 270, 618, 709
GluI GCNGC 3 cut(s) 270, 618, 709
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 5 cut(s) 152, 233, 561, 675, 685
HapII CCGG 6 cut(s) 65, 160, 168, 194, 476, 682
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 506, 634
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 3 cut(s) 314, 334, 439
HpaII CCGG 6 cut(s) 65, 160, 168, 194, 476, 682
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 487, 576
Hpy188I TCNGA 6 cut(s) 81, 128, 211, 279, 438, 555
Hpy188III TCNNGA 1 cut(s) 583
Hpy8I GTNNAC 2 cut(s) 487, 576
Hpy99I CGWCG 4 cut(s) 53, 224, 227, 488
HpyAV CCTTC 4 cut(s) 106, 244, 527, 555
HpyCH4III ACNGT 2 cut(s) 141, 730
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 1 cut(s) 19
HpyF3I CTNAG 5 cut(s) 182, 357, 437, 606, 621
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 506, 634
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 5 cut(s) 128, 162, 247, 266, 403
Lsp1109I GCAGC 2 cut(s) 604, 720
MaeII ACGT 2 cut(s) 222, 285
MaeIII GTNAC 1 cut(s) 440
MboII GAAGA 4 cut(s) 343, 509, 540, 662
MhlI GDGCHC 2 cut(s) 86, 133
MluCI AATT 4 cut(s) 199, 464, 479, 491
MlyI GAGTC 2 cut(s) 323, 448
MmeI TCCRAC 3 cut(s) 234, 618, 627
MnlI CCTC 8 cut(s) 142, 191, 217, 223, 238, 285, 385, 450
MspI CCGG 6 cut(s) 65, 160, 168, 194, 476, 682
MspR9I CCNGG 5 cut(s) 65, 169, 408, 476, 682
MvaI CCWGG 1 cut(s) 408
NciI CCSGG 4 cut(s) 65, 169, 476, 682
NlaIII CATG 2 cut(s) 506, 634
NlaIV GGNNCC 5 cut(s) 93, 130, 268, 363, 405
NmuCI GTSAC 1 cut(s) 440
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 3 cut(s) 271, 619, 710
PleI GAGTC 2 cut(s) 322, 447
PpsI GAGTC 2 cut(s) 322, 447
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 5 cut(s) 93, 130, 268, 363, 405
PspPI GGNCC 3 cut(s) 151, 279, 673
RsaI GTAC 3 cut(s) 143, 177, 473
RsaNI GTAC 3 cut(s) 142, 176, 472
SalI GTCGAC 1 cut(s) 485
SapI GCTCTTC 1 cut(s) 492
SatI GCNGC 3 cut(s) 270, 618, 709
Sau96I GGNCC 3 cut(s) 151, 279, 673
SchI GAGTC 2 cut(s) 323, 448
ScrFI CCNGG 5 cut(s) 65, 169, 408, 476, 682
SduI GDGCHC 2 cut(s) 86, 133
SetI ASST 9 cut(s) 45, 147, 159, 225, 252, 288, 363, 607, 627
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 199, 464, 479, 491
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 6 cut(s) 68, 89, 264, 270, 306, 320
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 5 cut(s) 63, 167, 406, 474, 680
TaaI ACNGT 2 cut(s) 141, 730
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 2 cut(s) 243, 486
TasI AATT 4 cut(s) 199, 464, 479, 491
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 334
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 617, 708
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 476, 647
TspGWI ACGGA 2 cut(s) 66, 327
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 479
XmiI GTMKAC 2 cut(s) 486, 575
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.