Rroxscaffold_2G00104670

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005847
Physical Location & Seq
Reverse (-)
27972222 .. 27973487
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104670.1

Sequence Viewer

Length: 969 bp
ATGGCAGGAACTCTGGTGCAAACTCAAATCCCACAACAAAAGCTCTACGACGGAGCTCAGTTCCCGGCGGTTCTATCTCCGAGCCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCCAAACCATCGAAGCCCAAAGACCGTACCTTGAGGCCCAGCTCCGGCAATCCGGGGCTGTACTCCTCAGGGACTTTCCGGTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCTCGGACCAACGTTGTGGGTCGGGTTTTTACCGCCAATGAGTCCCCGCCCGACCAGAAGATTCCGTTTCACCACGAAATGGCCCAGGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGAAGTGGAGCCTGGAAGTGGGGGGGGGGAAACTCCCATTGTTCTGAGTCACATTGTCTACGAGAGGATGAAAGAGAAGTACCCGGAATTCGTCGAAAAATTGGAAGAGCATGGATTGTTGTATACTCGGGTTTTAGGCGAAGGCGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCTACATTCTTGACCAAAGATAAGAACATAGCTGAGCAAAAGCTTGGCATGAAGCTGGAATGGTTGGAAGATGGAGTGAAATCAATAATGGGGCCAATCCCGGCCGTCAAATACGACAGCACAAGGCAGCGTAAGATGTGGTTCAACAGCATGGTAGCTGCATACACAGGCTGGGAAGATGCAAGGAATGATCCTGTAAAGGCTGTTACCTTTGGCAATGGCAACCCATTGCCGGCGGATGTCATCTACGACTGCTTGAAGATTCTTGAGGAGGAAAGTGTTGCCATTCCTTGGCAGAAGGGTGATGTTTTGCTGTTGGATAATTTGGCTGTCCTTCACTCTAGGAAATCGTTCACTCCGCCTCGCAGGGTGCTAGCTTCACTTTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

322

Amino Acids

35.77

Weight (kDa)

5.31

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 317 1.6e-32 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 352, 867
AccI GTMKAC 3 cut(s) 453, 518, 578
AciI CCGC 8 cut(s) 68, 89, 264, 270, 306, 320, 812, 935
AclI AACGTT 1 cut(s) 285
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 2 cut(s) 562, 678
AcsI RAATTY 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 3 cut(s) 143, 177, 476
AfiI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 808, 867
AgsI TTSAA 3 cut(s) 217, 721, 835
AjnI CCWGG 2 cut(s) 357, 406
AluBI AGCT 9 cut(s) 43, 56, 157, 250, 608, 619, 631, 734, 953
AluI AGCT 9 cut(s) 43, 56, 157, 250, 608, 619, 631, 734, 953
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 6 cut(s) 150, 231, 354, 562, 668, 678
ApeKI GCWGC 2 cut(s) 703, 734
ApoI RAATTY 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 926
AspS9I GGNCC 4 cut(s) 151, 279, 355, 668
AsuC2I CCSGG 4 cut(s) 65, 169, 479, 677
AsuHPI GGTGA 2 cut(s) 335, 890
AsuNHI GCTAGC 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 58, 86
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 715, 721
BccI CCATC 2 cut(s) 131, 641
BceAI ACGGC 2 cut(s) 549, 665
BciT130I CCWGG 2 cut(s) 359, 408
BcnI CCSGG 4 cut(s) 65, 169, 479, 677
BfaI CTAG 2 cut(s) 918, 950
BisI GCNGC 3 cut(s) 270, 704, 735
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 3 cut(s) 271, 705, 736
Bme1390I CCNGG 6 cut(s) 65, 169, 359, 408, 479, 677
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 4 cut(s) 151, 279, 355, 668
BmiI GGNNCC 5 cut(s) 93, 268, 363, 405, 669
BmrFI CCNGG 6 cut(s) 65, 169, 359, 408, 479, 677
BmsI GCATC 1 cut(s) 745
BmtI GCTAGC 1 cut(s) 953
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu1102I GCTNAGC 1 cut(s) 609
BpuEI CTTGAG 2 cut(s) 167, 863
BpuMI CCSGG 4 cut(s) 65, 169, 479, 677
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 5 cut(s) 168, 275, 357, 565, 866
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 808, 867
Bse118I RCCGGY 1 cut(s) 808
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 799, 803
BseBI CCWGG 2 cut(s) 359, 408
BseDI CCNNGG 5 cut(s) 168, 275, 357, 565, 866
BseGI GGATG 2 cut(s) 468, 820
BseLI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 808, 867
BseMI GCAATG 2 cut(s) 799, 803
BseMII CTCAG 4 cut(s) 71, 196, 431, 600
BseRI GAGGAG 3 cut(s) 170, 260, 860
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 2 cut(s) 715, 721
BseYI CCCAGC 2 cut(s) 153, 747
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 6 cut(s) 152, 233, 356, 564, 670, 680
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 7 cut(s) 65, 160, 168, 194, 479, 677, 809
BslFI GGGAC 2 cut(s) 200, 301
BslI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 808, 867
BsmFI GGGAC 2 cut(s) 200, 301
BsnI GGCC 6 cut(s) 152, 233, 356, 564, 670, 680
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 58, 86
Bsp143I GATC 1 cut(s) 766
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 8 cut(s) 68, 89, 264, 270, 306, 320, 812, 935
BspANI GGCC 6 cut(s) 152, 233, 356, 564, 670, 680
BspCNI CTCAG 4 cut(s) 70, 195, 432, 601
BspLI GGNNCC 5 cut(s) 93, 268, 363, 405, 669
BspOI GCTAGC 1 cut(s) 953
BspPI GGATC 1 cut(s) 761
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 799, 803
BsrFI RCCGGY 1 cut(s) 808
BssAI RCCGGY 1 cut(s) 808
BssECI CCNNGG 5 cut(s) 168, 275, 357, 565, 866
BssMI GATC 1 cut(s) 766
BssNAI GTATAC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 866
Bst1107I GTATAC 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 359, 408
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 810, 951
BstDEI CTNAG 4 cut(s) 57, 182, 440, 609
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 468, 820
BstKTI GATC 1 cut(s) 769
BstMBI GATC 1 cut(s) 766
BstMCI CGRYCG 1 cut(s) 681
BstNI CCWGG 2 cut(s) 359, 408
BstSCI CCNGG 6 cut(s) 63, 167, 357, 406, 477, 675
BstV1I GCAGC 2 cut(s) 715, 721
BstXI CCANNNNNNTGG 1 cut(s) 289
BstZ17I GTATAC 1 cut(s) 519
BstZI CGGCCG 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 6 cut(s) 152, 233, 356, 564, 670, 680
BtgI CCRYGG 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 468, 820
Cac8I GCNNGC 2 cut(s) 810, 951
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 4 cut(s) 151, 279, 355, 668
Csp6I GTAC 3 cut(s) 142, 176, 475
CviAII CATG 3 cut(s) 506, 625, 727
CviQI GTAC 3 cut(s) 142, 176, 475
DdeI CTNAG 4 cut(s) 57, 182, 440, 609
DpnI GATC 1 cut(s) 768
DpnII GATC 1 cut(s) 766
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 562, 678
EagI CGGCCG 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 3 cut(s) 279, 827, 924
Ecl136II GAGCTC 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 866
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 58, 86
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 357, 406
EcoT14I CCWWGG 1 cut(s) 866
EcoT38I GRGCYC 2 cut(s) 58, 86
ErhI CCWWGG 1 cut(s) 866
FaeI CATG 3 cut(s) 509, 628, 730
FaiI YATR 7 cut(s) 258, 507, 519, 605, 626, 728, 739
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 200, 301
FatI CATG 3 cut(s) 505, 624, 726
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 3 cut(s) 453, 518, 578
Fnu4HI GCNGC 3 cut(s) 270, 704, 735
FokI GGATG 2 cut(s) 475, 827
FriOI GRGCYC 2 cut(s) 58, 86
Fsp4HI GCNGC 3 cut(s) 270, 704, 735
FspBI CTAG 2 cut(s) 918, 950
GluI GCNGC 3 cut(s) 270, 704, 735
GsaI CCCAGC 2 cut(s) 157, 751
HaeIII GGCC 6 cut(s) 152, 233, 356, 564, 670, 680
HapII CCGG 7 cut(s) 65, 160, 168, 194, 479, 677, 809
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 509, 628, 730
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 4 cut(s) 314, 334, 442, 838
HpaII CCGG 7 cut(s) 65, 160, 168, 194, 479, 677, 809
HphI GGTGA 2 cut(s) 335, 890
Hpy166II GTNNAC 4 cut(s) 454, 519, 579, 930
Hpy188I TCNGA 5 cut(s) 81, 211, 279, 441, 558
Hpy188III TCNNGA 2 cut(s) 586, 842
Hpy8I GTNNAC 4 cut(s) 454, 519, 579, 930
Hpy99I CGWCG 4 cut(s) 53, 224, 227, 491
HpyAV CCTTC 6 cut(s) 106, 244, 530, 558, 868, 920
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 3 cut(s) 19, 737, 758
HpyF3I CTNAG 4 cut(s) 57, 182, 440, 609
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 509, 628, 730
KroI GCCGGC 1 cut(s) 808
KroNI GCCGGC 1 cut(s) 810
Kzo9I GATC 1 cut(s) 766
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 5 cut(s) 53, 162, 247, 266, 403
Lsp1109I GCAGC 2 cut(s) 715, 721
LweI GCATC 1 cut(s) 745
MaeI CTAG 2 cut(s) 918, 950
MaeII ACGT 2 cut(s) 222, 285
MaeIII GTNAC 2 cut(s) 443, 781
MalI GATC 1 cut(s) 768
MboI GATC 1 cut(s) 766
MboII GAAGA 6 cut(s) 343, 512, 543, 656, 764, 847
MhlI GDGCHC 2 cut(s) 58, 86
MluCI AATT 4 cut(s) 199, 482, 494, 898
MlyI GAGTC 2 cut(s) 323, 451
MmeI TCCRAC 3 cut(s) 234, 621, 873
MroNI GCCGGC 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 926
MspI CCGG 7 cut(s) 65, 160, 168, 194, 479, 677, 809
MspR9I CCNGG 6 cut(s) 65, 169, 359, 408, 479, 677
MvaI CCWGG 2 cut(s) 359, 408
NaeI GCCGGC 1 cut(s) 810
NciI CCSGG 4 cut(s) 65, 169, 479, 677
NdeII GATC 1 cut(s) 766
NgoMIV GCCGGC 1 cut(s) 808
NheI GCTAGC 1 cut(s) 949
NlaIII CATG 3 cut(s) 509, 628, 730
NlaIV GGNNCC 5 cut(s) 93, 268, 363, 405, 669
NmuCI GTSAC 1 cut(s) 443
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 495
PdiI GCCGGC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 2 cut(s) 334, 838
PflMI CCANNNNNTGG 2 cut(s) 352, 867
PkrI GCNGC 3 cut(s) 271, 705, 736
PleI GAGTC 2 cut(s) 322, 450
PpsI GAGTC 2 cut(s) 322, 450
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 357, 406
PspFI CCCAGC 2 cut(s) 153, 747
PspGI CCWGG 2 cut(s) 357, 406
PspN4I GGNNCC 5 cut(s) 93, 268, 363, 405, 669
PspPI GGNCC 4 cut(s) 151, 279, 355, 668
RsaI GTAC 3 cut(s) 143, 177, 476
RsaNI GTAC 3 cut(s) 142, 176, 475
SacI GAGCTC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 495
SatI GCNGC 3 cut(s) 270, 704, 735
Sau3AI GATC 1 cut(s) 766
Sau96I GGNCC 4 cut(s) 151, 279, 355, 668
SchI GAGTC 2 cut(s) 323, 451
ScrFI CCNGG 6 cut(s) 65, 169, 359, 408, 479, 677
SduI GDGCHC 2 cut(s) 58, 86
SfaNI GCATC 1 cut(s) 745
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 146, 842
SmoI CTYRAG 2 cut(s) 146, 842
Sse9I AATT 4 cut(s) 199, 482, 494, 898
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 8 cut(s) 68, 89, 264, 270, 306, 320, 812, 935
SspMI CTAG 2 cut(s) 918, 950
SstI GAGCTC 1 cut(s) 58
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 6 cut(s) 63, 167, 357, 406, 477, 675
StyI CCWWGG 1 cut(s) 866
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 3 cut(s) 126, 243, 489
TasI AATT 4 cut(s) 199, 482, 494, 898
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 334, 838
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 703, 734
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 479, 641
TspGWI ACGGA 2 cut(s) 66, 327
Van91I CCANNNNNTGG 2 cut(s) 352, 867
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 482
XmiI GTMKAC 3 cut(s) 453, 518, 578
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 2 cut(s) 918, 950
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.