Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Reverse (-)

17149502 .. 17150875

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATGAGAAATGTCAAATTGAACCTAGACAATTTCGGACCTGAAAGACCCACCCAACACAGCTCCATATTATTTCACTCCCTAACCCAGTTCACCAACTCACCCCGACACTGCAAACCGGCGCGTCAAACCACTTGCCACCCCATACCAGAGAGGCAGCATGGCTGGTACCTTGGTGGAAACCCGAATTTCACAGCAGAAGCTCAACGGCGAAAGCCAATTCCCGCTAGTTATATCTTCGCCTCCTGCATCACCAAAACCATCGAAGCCGAAAAACCCTATGTGGGCGGGGCCGCTCCTCGGACCAACGTCATGGGTCGGGTTTTTATCGCCAACGAGTCCCCCGCCCGACCAGAAGATTCCATCCCACCACGAAATGGCTCAGGTATGCTCTCATTGCACGGCGCCTGTGGTGTGGTGCTGGAGTACCCATCCAAGTTGTTTTTCTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCGATTGTTCTGCGCCACATTGTGTACGAGAGGATGATAGAGAAGTACCCGGAGTTCGTTGACAAGTTGGAGGAGCACGGGTTGTTATATAACCGGGTTTTGGGGGAAGACGACAATTCTTCTTCTCCAATCGGCCGTGGCTGGAAGTCCACCTTCTTGACCAAAGACGAGGCTGCTAAGCTTGGCATGAAGTTAGAATGGTTGGATGATGGAGTGAAGTCAATCATGGGACCAATCCCTGCCATCAAATTTAACAGCACAACGCAGCGCAAGATTTGGTTCAACAGCATGGTGGCAGGCGTCACTTTTGGAGATGGCAGCCCATTGCCGGCGGATATCATCCACGACTGCTTCAAAGTTCTTGAAGAGGAAAGCGTTGCCTTCCCTTGGAGCAGAGCCGATGTTGTAGTACTCGATAACTTGGCTGTCCTTCACTCCCGGAAATCGTTCACTCCACCTCGCAGCTCTGCAAATAGTTTAGGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

324

Amino Acids

35.88

Weight (kDa)

7.68

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	168, 404
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	124
AciI	CCGC	5 cut(s)	225, 288, 294, 345, 815
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	187, 731
AcyI	GRCGYC	2 cut(s)	405, 783
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	5 cut(s)	170, 428, 509, 530, 894
AfiI	CCNNNNNNNGG	7 cut(s)	284, 300, 377, 470, 583, 811, 870
AgsI	TTSAA	4 cut(s)	22, 766, 838, 848
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	63, 203, 664, 948
AluI	AGCT	4 cut(s)	63, 203, 664, 948
Alw21I	GWGCWC	1 cut(s)	561
AoxI	GGCC	2 cut(s)	291, 616
ApeKI	GCWGC	5 cut(s)	157, 656, 748, 801, 945
ApoI	RAATTY	2 cut(s)	187, 731
Asp700I	GAANNNNTTC	1 cut(s)	929
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	4 cut(s)	124, 407, 498, 753
AspS9I	GGNCC	4 cut(s)	38, 291, 303, 713
AsuC2I	CCSGG	3 cut(s)	533, 578, 922
AsuHPI	GGTGA	3 cut(s)	85, 93, 244
AvaII	GGWCC	3 cut(s)	38, 303, 713
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanI	GGYRCC	2 cut(s)	168, 404
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	169, 643, 760, 813, 957
BccI	CCATC	6 cut(s)	269, 371, 439, 686, 734, 791
BceAI	ACGGC	3 cut(s)	224, 418, 603
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	3 cut(s)	533, 578, 922
BfaI	CTAG	2 cut(s)	26, 228
BfmI	CTRYAG	1 cut(s)	968
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	6 cut(s)	158, 294, 657, 749, 802, 946
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	6 cut(s)	159, 295, 658, 750, 803, 947
BmcAI	AGTACT	1 cut(s)	894
Bme1390I	CCNGG	4 cut(s)	465, 533, 578, 922
Bme18I	GGWCC	3 cut(s)	38, 303, 713
BmgT120I	GGNCC	4 cut(s)	38, 291, 303, 713
BmiI	GGNNCC	5 cut(s)	170, 292, 406, 462, 714
BmrFI	CCNGG	4 cut(s)	465, 533, 578, 922
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuMI	CCSGG	3 cut(s)	533, 578, 922
BsaHI	GRCGYC	2 cut(s)	405, 783
BsaJI	CCNNGG	4 cut(s)	172, 299, 619, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	7 cut(s)	284, 300, 377, 470, 583, 811, 870
Bse118I	RCCGGY	2 cut(s)	118, 811
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	2 cut(s)	395, 806
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	4 cut(s)	172, 299, 619, 869
BseGI	GGATG	5 cut(s)	363, 431, 522, 694, 822
BseLI	CCNNNNNNNGG	7 cut(s)	284, 300, 377, 470, 583, 811, 870
BseMI	GCAATG	2 cut(s)	395, 806
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	288, 569
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	169, 643, 760, 813, 957
Bsh1236I	CGCG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	293, 618
BshNI	GGYRCC	2 cut(s)	168, 404
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	5 cut(s)	119, 533, 577, 812, 922
BslFI	GGGAC	2 cut(s)	325, 726
BslI	CCNNNNNNNGG	7 cut(s)	284, 300, 377, 470, 583, 811, 870
BsmFI	GGGAC	2 cut(s)	325, 726
BsnI	GGCC	2 cut(s)	293, 618
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp1720I	GCTNAGC	1 cut(s)	660
BspACI	CCGC	5 cut(s)	225, 288, 294, 345, 815
BspANI	GGCC	2 cut(s)	293, 618
BspCNI	CTCAG	1 cut(s)	395
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	5 cut(s)	170, 292, 406, 462, 714
BspT107I	GGYRCC	2 cut(s)	168, 404
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	395, 806
BsrFI	RCCGGY	2 cut(s)	118, 811
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	2 cut(s)	118, 811
BssECI	CCNNGG	4 cut(s)	172, 299, 619, 869
BssNI	GRCGYC	2 cut(s)	405, 783
BssT1I	CCWWGG	2 cut(s)	172, 869
Bst2UI	CCWGG	1 cut(s)	465
Bst6I	CTCTTC	1 cut(s)	843
BstACI	GRCGYC	2 cut(s)	405, 783
BstC8I	GCNNGC	2 cut(s)	781, 813
BstDEI	CTNAG	2 cut(s)	382, 660
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	5 cut(s)	363, 431, 522, 694, 822
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	4 cut(s)	124, 407, 498, 753
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	465
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	463, 531, 576, 920
BstSFI	CTRYAG	1 cut(s)	968
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	169, 643, 760, 813, 957
BstV2I	GAAGAC	1 cut(s)	597
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstZI	CGGCCG	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	293, 618
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	5 cut(s)	363, 431, 522, 694, 822
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	781, 813
CfoI	GCGC	4 cut(s)	124, 407, 498, 753
Cfr10I	RCCGGY	2 cut(s)	118, 811
Cfr13I	GGNCC	4 cut(s)	38, 291, 303, 713
CseI	GACGC	2 cut(s)	113, 772
Csp6I	GTAC	5 cut(s)	169, 427, 508, 529, 893
CviAII	CATG	5 cut(s)	161, 313, 670, 709, 772
CviQI	GTAC	5 cut(s)	169, 427, 508, 529, 893
DdeI	CTNAG	2 cut(s)	382, 660
DinI	GGCGCC	1 cut(s)	406
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	616
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
EciI	GGCGGA	1 cut(s)	830
EclXI	CGGCCG	1 cut(s)	616
Eco130I	CCWWGG	2 cut(s)	172, 869
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	3 cut(s)	38, 303, 713
Eco52I	CGGCCG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	172, 869
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	172, 869
FaeI	CATG	5 cut(s)	164, 316, 673, 712, 775
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	2 cut(s)	325, 726
FatI	CATG	5 cut(s)	160, 312, 669, 708, 771
FauI	CCCGC	3 cut(s)	232, 281, 352
Fnu4HI	GCNGC	6 cut(s)	158, 294, 657, 749, 802, 946
FokI	GGATG	5 cut(s)	350, 418, 529, 701, 809
Fsp4HI	GCNGC	6 cut(s)	158, 294, 657, 749, 802, 946
FspBI	CTAG	2 cut(s)	26, 228
GlaI	GCGC	4 cut(s)	123, 406, 497, 752
GluI	GCNGC	6 cut(s)	158, 294, 657, 749, 802, 946
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	293, 618
HapII	CCGG	5 cut(s)	119, 533, 577, 812, 922
HgaI	GACGC	2 cut(s)	113, 772
HhaI	GCGC	4 cut(s)	124, 407, 498, 753
Hin1I	GRCGYC	2 cut(s)	405, 783
Hin1II	CATG	5 cut(s)	164, 316, 673, 712, 775
Hin6I	GCGC	4 cut(s)	122, 405, 496, 751
HinP1I	GCGC	4 cut(s)	122, 405, 496, 751
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	2 cut(s)	338, 359
HpaII	CCGG	5 cut(s)	119, 533, 577, 812, 922
HphI	GGTGA	3 cut(s)	85, 93, 244
Hpy166II	GTNNAC	5 cut(s)	93, 508, 544, 633, 933
Hpy188I	TCNGA	3 cut(s)	38, 303, 486
Hpy188III	TCNNGA	2 cut(s)	640, 845
Hpy8I	GTNNAC	5 cut(s)	93, 508, 544, 633, 933
HpyAV	CCTTC	3 cut(s)	646, 874, 923
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	114, 249, 400, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	382, 660
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	2 cut(s)	405, 783
Hsp92II	CATG	5 cut(s)	164, 316, 673, 712, 775
HspAI	GCGC	4 cut(s)	122, 405, 496, 751
KasI	GGCGCC	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	811
KroNI	GCCGGC	1 cut(s)	813
LmnI	GCTCC	5 cut(s)	68, 301, 460, 556, 873
Lsp1109I	GCAGC	5 cut(s)	169, 643, 760, 813, 957
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	2 cut(s)	26, 228
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	784
MbiI	CCGCTC	1 cut(s)	296
MboII	GAAGA	7 cut(s)	229, 368, 439, 594, 597, 602, 860
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	6 cut(s)	17, 31, 187, 219, 598, 731
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	531, 666
MnlI	CCTC	8 cut(s)	147, 253, 309, 507, 547, 646, 844, 951
MroNI	GCCGGC	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	1 cut(s)	735
MspI	CCGG	5 cut(s)	119, 533, 577, 812, 922
MspR9I	CCNGG	4 cut(s)	465, 533, 578, 922
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	397
NaeI	GCCGGC	1 cut(s)	813
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	3 cut(s)	533, 578, 922
NgoMIV	GCCGGC	1 cut(s)	811
NlaIII	CATG	5 cut(s)	164, 316, 673, 712, 775
NlaIV	GGNNCC	5 cut(s)	170, 292, 406, 462, 714
NmuCI	GTSAC	1 cut(s)	784
PdiI	GCCGGC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	920
PkrI	GCNGC	6 cut(s)	159, 295, 658, 750, 803, 947
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	5 cut(s)	170, 292, 406, 462, 714
PspPI	GGNCC	4 cut(s)	38, 291, 303, 713
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
RsaI	GTAC	5 cut(s)	170, 428, 509, 530, 894
RsaNI	GTAC	5 cut(s)	169, 427, 508, 529, 893
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	6 cut(s)	158, 294, 657, 749, 802, 946
Sau96I	GGNCC	4 cut(s)	38, 291, 303, 713
ScaI	AGTACT	1 cut(s)	894
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	4 cut(s)	465, 533, 578, 922
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	968
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	3 cut(s)	38, 303, 713
Sse9I	AATT	6 cut(s)	17, 31, 187, 219, 598, 731
SsiI	CCGC	5 cut(s)	225, 288, 294, 345, 815
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	26, 228
StyD4I	CCNGG	4 cut(s)	463, 531, 576, 920
StyI	CCWWGG	2 cut(s)	172, 869
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	264, 897
TasI	AATT	6 cut(s)	17, 31, 187, 219, 598, 731
TatI	WGTACW	1 cut(s)	892
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	5 cut(s)	157, 656, 748, 801, 945
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	38, 303, 713
XapI	RAATTY	2 cut(s)	187, 731
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	2 cut(s)	26, 228
ZrmI	AGTACT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.