MD09G1202600.v1.1

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005847
Physical Location & Seq
Reverse (-)
18905853 .. 18907693
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1202600.v1.1.491

Sequence Viewer

Length: 975 bp
ATGTCAGGATCTTTGGTGGAAACCCAAATCCCGCAGCAGAAGCTCTTCAGCGGAATCCAATTCCCGCTAGTTATATCTCCGCCACCGGCGGTTCACTTCACTTTCTCCGCCCTGACCAAAACTATCGAAGCCGAGAAACCGTACCTGGACGCCCAGCTCCGAAAATCGGGGGCCGTGCTCTTGAGGGGCTTTCCCGTAAATACGGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAAGAGCTCCCCTATGTGGGCGGAGCTGCTCCCCGGACCAACGTCGTGGGTCGGGTGTTTACCGCCAACGAGTCCCCGCCCGATCAGAAGATTCCATTCCACCACGAAATGGCTCAGGTGCCGGAGTACCCATCCAAGCTGTTCTTCTTTTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCGATTGTTCTGAGCCACATTGTGTACGGGAGGATGAAGGAGAAGTACCCGGAGTTCGTTGACAAGTTGGAGGAGCACGGGTTGATATATAACCGAGTTTTGGGCGAAGACGACGACCCTTCTTCTCCAATTGGCCGTGGCTGGAAGTCCACCTTCATGACCAAAGACAAGAGTATAGCTGAGCAAAGGGCTGCTAAGCTTGGTATGAAGTTGGAATGGTTGGCGGATGGAGTGAAATCAATCATGGGACCAATCCCTGCCATCAAATATATAAGCACAACGCAGCGCAAGATTTGGTTCAACAGCATGGTAGCAGCGTATACCGGCTGGGAAGATGCAAGGAACGACCCTGTGAAGGCCGTCACCTTTGGAGATGGCAGCCCATTGCCTGCGGATATCATCCACGACTGCTTGAAAATTCTCGAAGAGGAAAGCATTGCCTTCCCCTGGCGCAAGGGTGATGTTTTACTGCTGGATAATTTGGCTGTCCTTCACTCCCGGAAGTCGTTCACTCCGCCTCGCAGAGTCCTAGCTTCGCTCTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

325

Amino Acids

35.98

Weight (kDa)

6.02

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 319 3.1e-33 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 1 cut(s) 746
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 1 cut(s) 843
AcuI CTGAAG 1 cut(s) 31
AcyI GRCGYC 2 cut(s) 150, 222
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 4 cut(s) 143, 371, 452, 473
AfiI CCNNNNNNNGG 8 cut(s) 166, 259, 260, 352, 413, 526, 781, 873
AgsI TTSAA 3 cut(s) 217, 727, 841
AjnI CCWGG 3 cut(s) 144, 406, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 8 cut(s) 43, 157, 250, 269, 382, 605, 625, 959
AluI AGCT 8 cut(s) 43, 157, 250, 269, 382, 605, 625, 959
Alw21I GWGCWC 3 cut(s) 180, 252, 504
AlwI GGATC 1 cut(s) 16
AoxI GGCC 5 cut(s) 171, 204, 231, 559, 783
ApeKI GCWGC 6 cut(s) 34, 269, 617, 709, 740, 804
ApoI RAATTY 1 cut(s) 843
Asp700I GAANNNNTTC 2 cut(s) 44, 932
AspLEI GCGC 2 cut(s) 714, 879
AspS9I GGNCC 3 cut(s) 171, 279, 674
AsuC2I CCSGG 3 cut(s) 277, 476, 925
AsuHPI GGTGA 2 cut(s) 781, 896
AsuII TTCGAA 1 cut(s) 243
AvaII GGWCC 2 cut(s) 279, 674
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 3 cut(s) 180, 252, 504
BbvI GCAGC 6 cut(s) 46, 256, 604, 721, 752, 816
BccI CCATC 4 cut(s) 382, 647, 695, 794
BceAI ACGGC 4 cut(s) 158, 219, 546, 770
BciT130I CCWGG 3 cut(s) 146, 408, 874
BcnI CCSGG 3 cut(s) 277, 476, 925
BfaI CTAG 2 cut(s) 68, 956
BisI GCNGC 6 cut(s) 35, 270, 618, 710, 741, 805
BlpI GCTNAGC 2 cut(s) 606, 621
BlsI GCNGC 6 cut(s) 36, 271, 619, 711, 742, 806
Bme1390I CCNGG 6 cut(s) 146, 277, 408, 476, 874, 925
Bme18I GGWCC 2 cut(s) 279, 674
BmgT120I GGNCC 3 cut(s) 171, 279, 674
BmiI GGNNCC 4 cut(s) 172, 363, 405, 675
BmrFI CCNGG 6 cut(s) 146, 277, 408, 476, 874, 925
BmsI GCATC 1 cut(s) 751
BoxI GACNNNNGTC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 2 cut(s) 606, 621
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 3 cut(s) 277, 476, 925
BsaHI GRCGYC 2 cut(s) 150, 222
BsaJI CCNNGG 3 cut(s) 275, 562, 872
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 8 cut(s) 166, 259, 260, 352, 413, 526, 781, 873
Bse118I RCCGGY 2 cut(s) 85, 749
Bse3DI GCAATG 2 cut(s) 809, 861
BseBI CCWGG 3 cut(s) 146, 408, 874
BseDI CCNNGG 3 cut(s) 275, 562, 872
BseGI GGATG 4 cut(s) 374, 465, 658, 825
BseLI CCNNNNNNNGG 8 cut(s) 166, 259, 260, 352, 413, 526, 781, 873
BseMI GCAATG 2 cut(s) 809, 861
BseMII CTCAG 3 cut(s) 371, 428, 597
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 6 cut(s) 46, 256, 604, 721, 752, 816
BseYI CCCAGC 2 cut(s) 153, 753
BshFI GGCC 5 cut(s) 173, 206, 233, 561, 785
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 3 cut(s) 180, 252, 504
BsiSI CCGG 6 cut(s) 86, 277, 365, 476, 750, 925
BslFI GGGAC 2 cut(s) 301, 687
BslI CCNNNNNNNGG 8 cut(s) 166, 259, 260, 352, 413, 526, 781, 873
BsmFI GGGAC 2 cut(s) 301, 687
BsnI GGCC 5 cut(s) 173, 206, 233, 561, 785
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 3 cut(s) 180, 252, 504
Bsp143I GATC 2 cut(s) 8, 325
Bsp1720I GCTNAGC 2 cut(s) 606, 621
BspANI GGCC 5 cut(s) 173, 206, 233, 561, 785
BspCNI CTCAG 3 cut(s) 370, 429, 598
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 4 cut(s) 172, 363, 405, 675
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 2 cut(s) 50, 240
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 809, 861
BsrFI RCCGGY 2 cut(s) 85, 749
BssAI RCCGGY 2 cut(s) 85, 749
BssECI CCNNGG 3 cut(s) 275, 562, 872
BssMI GATC 2 cut(s) 8, 325
BssNAI GTATAC 1 cut(s) 747
BssNI GRCGYC 2 cut(s) 150, 222
Bst1107I GTATAC 1 cut(s) 747
Bst2UI CCWGG 3 cut(s) 146, 408, 874
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 3 cut(s) 50, 240, 846
BstACI GRCGYC 2 cut(s) 150, 222
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 4 cut(s) 357, 437, 606, 621
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 4 cut(s) 374, 465, 658, 825
BstHHI GCGC 2 cut(s) 714, 879
BstKTI GATC 2 cut(s) 11, 328
BstMBI GATC 2 cut(s) 8, 325
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 3 cut(s) 146, 408, 874
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 6 cut(s) 144, 275, 406, 474, 872, 923
BstV1I GCAGC 6 cut(s) 46, 256, 604, 721, 752, 816
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 1 cut(s) 8
BstZ17I GTATAC 1 cut(s) 747
BsuRI GGCC 5 cut(s) 173, 206, 233, 561, 785
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 4 cut(s) 374, 465, 658, 825
Cac8I GCNNGC 1 cut(s) 816
CciI TCATGA 1 cut(s) 582
CfoI GCGC 2 cut(s) 714, 879
Cfr10I RCCGGY 2 cut(s) 85, 749
Cfr13I GGNCC 3 cut(s) 171, 279, 674
CseI GACGC 1 cut(s) 158
Csp6I GTAC 4 cut(s) 142, 370, 451, 472
CviAII CATG 3 cut(s) 583, 670, 733
CviQI GTAC 4 cut(s) 142, 370, 451, 472
DdeI CTNAG 4 cut(s) 357, 437, 606, 621
DpnI GATC 2 cut(s) 10, 327
DpnII GATC 2 cut(s) 8, 325
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 3 cut(s) 50, 240, 846
EarI CTCTTC 3 cut(s) 50, 240, 846
EciI GGCGGA 5 cut(s) 69, 97, 279, 665, 930
Ecl136II GAGCTC 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 823
Eco47I GGWCC 2 cut(s) 279, 674
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 144, 406, 872
EcoRV GATATC 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 3 cut(s) 586, 673, 736
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 563, 595
FaqI GGGAC 2 cut(s) 301, 687
FatI CATG 3 cut(s) 582, 669, 732
FauI CCCGC 3 cut(s) 39, 72, 327
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 6 cut(s) 35, 270, 618, 710, 741, 805
FokI GGATG 4 cut(s) 361, 472, 665, 812
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 6 cut(s) 35, 270, 618, 710, 741, 805
FspBI CTAG 2 cut(s) 68, 956
GlaI GCGC 2 cut(s) 713, 878
GluI GCNGC 6 cut(s) 35, 270, 618, 710, 741, 805
GsaI CCCAGC 2 cut(s) 157, 757
HaeIII GGCC 5 cut(s) 173, 206, 233, 561, 785
HapII CCGG 6 cut(s) 86, 277, 365, 476, 750, 925
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 714, 879
Hin1I GRCGYC 2 cut(s) 150, 222
Hin1II CATG 3 cut(s) 586, 673, 736
Hin6I GCGC 2 cut(s) 712, 877
HinP1I GCGC 2 cut(s) 712, 877
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 54, 314, 334, 951
HpaII CCGG 6 cut(s) 86, 277, 365, 476, 750, 925
HphI GGTGA 2 cut(s) 781, 896
Hpy166II GTNNAC 7 cut(s) 94, 303, 451, 487, 576, 747, 936
Hpy188I TCNGA 5 cut(s) 161, 211, 330, 429, 438
Hpy188III TCNNGA 4 cut(s) 6, 181, 583, 848
Hpy8I GTNNAC 7 cut(s) 94, 303, 451, 487, 576, 747, 936
Hpy99I CGWCG 4 cut(s) 224, 227, 290, 542
HpyAV CCTTC 7 cut(s) 244, 457, 555, 589, 775, 877, 926
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 2 cut(s) 764, 969
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 4 cut(s) 357, 437, 606, 621
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 2 cut(s) 150, 222
Hsp92II CATG 3 cut(s) 586, 673, 736
HspAI GCGC 2 cut(s) 712, 877
Kzo9I GATC 2 cut(s) 8, 325
LguI GCTCTTC 2 cut(s) 50, 240
LmnI GCTCC 6 cut(s) 162, 255, 266, 277, 403, 499
Lsp1109I GCAGC 6 cut(s) 46, 256, 604, 721, 752, 816
LweI GCATC 1 cut(s) 751
MaeI CTAG 2 cut(s) 68, 956
MaeII ACGT 2 cut(s) 222, 285
MaeIII GTNAC 1 cut(s) 787
MalI GATC 2 cut(s) 10, 327
MboI GATC 2 cut(s) 8, 325
MboII GAAGA 8 cut(s) 37, 257, 343, 379, 540, 545, 770, 863
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 3 cut(s) 180, 252, 504
MluCI AATT 4 cut(s) 59, 555, 843, 904
MlyI GAGTC 2 cut(s) 323, 960
MmeI TCCRAC 3 cut(s) 234, 474, 618
MnlI CCTC 7 cut(s) 177, 217, 223, 450, 490, 847, 954
MroXI GAANNNNTTC 2 cut(s) 44, 932
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 6 cut(s) 86, 277, 365, 476, 750, 925
MspR9I CCNGG 6 cut(s) 146, 277, 408, 476, 874, 925
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 3 cut(s) 146, 408, 874
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 3 cut(s) 277, 476, 925
NdeII GATC 2 cut(s) 8, 325
NlaIII CATG 3 cut(s) 586, 673, 736
NlaIV GGNNCC 4 cut(s) 172, 363, 405, 675
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 787
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 1 cut(s) 582
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 2 cut(s) 50, 240
PdmI GAANNNNTTC 2 cut(s) 44, 932
PfeI GAWTC 2 cut(s) 54, 334
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 6 cut(s) 36, 271, 619, 711, 742, 806
PleI GAGTC 2 cut(s) 322, 959
PpsI GAGTC 2 cut(s) 322, 959
PshAI GACNNNNGTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 144, 406, 872
PspFI CCCAGC 2 cut(s) 153, 753
PspGI CCWGG 3 cut(s) 144, 406, 872
PspN4I GGNNCC 4 cut(s) 172, 363, 405, 675
PspPI GGNCC 3 cut(s) 171, 279, 674
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 4 cut(s) 143, 371, 452, 473
RsaNI GTAC 4 cut(s) 142, 370, 451, 472
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 2 cut(s) 50, 240
SatI GCNGC 6 cut(s) 35, 270, 618, 710, 741, 805
Sau3AI GATC 2 cut(s) 8, 325
Sau96I GGNCC 3 cut(s) 171, 279, 674
SchI GAGTC 2 cut(s) 323, 960
ScrFI CCNGG 6 cut(s) 146, 277, 408, 476, 874, 925
SduI GDGCHC 3 cut(s) 180, 252, 504
SfaNI GCATC 1 cut(s) 751
SfuI TTCGAA 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 85
SinI GGWCC 2 cut(s) 279, 674
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 4 cut(s) 59, 555, 843, 904
SseBI AGGCCT 1 cut(s) 233
SspMI CTAG 2 cut(s) 68, 956
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 6 cut(s) 144, 275, 406, 474, 872, 923
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 3 cut(s) 126, 243, 849
TasI AATT 4 cut(s) 59, 555, 843, 904
TfiI GAWTC 2 cut(s) 54, 334
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 6 cut(s) 34, 269, 617, 709, 740, 804
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 476, 571, 647
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 279, 674
XapI RAATTY 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 746
XmnI GAANNNNTTC 2 cut(s) 44, 932
XspI CTAG 2 cut(s) 68, 956
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.