Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Forward (+)

54500498 .. 54500975

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAGGGACTCTAGTGCAAACTCAAATCCTACAGCAAAAGCTCTACGATGGAGCCCAATTCCTGGCGGTTCTATCTCCAAGTCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCGAAGTCATCGAAGCCCAAACATCCTACCTTGAGTCCCTGCTCCAAAAATCCAGGGCTGTACTCCTCAGGGGATTTCCGGTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCTTTCGGCTTCGAGGAGCTTCCCTACGTTGCCAGAGCCGCCTCTCGGACCAATATTGTGGGTCGGGTTTTTACTGCCACTGAGTCCCCGCCTGATCAGAAGATTTCATTTTACCATGAAATGGCTCAGGTGCCAGAGTTTTGCCTCCCTTTTTCTGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

131

Amino Acids

14.39

Weight (kDa)

4.86

Isoelectric Point (pI)

64.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	361
AccB7I	CCANNNNNTGG	2 cut(s)	64, 352
AciI	CCGC	4 cut(s)	68, 89, 270, 320
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	64, 276, 352
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	63, 167
AluBI	AGCT	2 cut(s)	43, 250
AluI	AGCT	2 cut(s)	43, 250
AspS9I	GGNCC	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	58
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	65, 169
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	65, 169
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	55, 93, 363
BmrFI	CCNGG	2 cut(s)	65, 169
BoxI	GACNNNNGTC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 276, 352
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	65, 169
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	3 cut(s)	64, 276, 352
BseMII	CTCAG	3 cut(s)	196, 303, 371
BseRI	GAGGAG	2 cut(s)	170, 260
BshNI	GGYRCC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	3 cut(s)	22, 136, 301
BslI	CCNNNNNNNGG	3 cut(s)	64, 276, 352
BsmFI	GGGAC	3 cut(s)	22, 136, 301
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	4 cut(s)	68, 89, 270, 320
BspCNI	CTCAG	3 cut(s)	195, 304, 370
BspLI	GGNNCC	3 cut(s)	55, 93, 363
BspT107I	GGYRCC	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	65, 169
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	182, 312, 357
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	65, 169
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	63, 167
BstSFI	CTRYAG	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	182, 312, 357
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	63, 167
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	1 cut(s)	350
FaiI	YATR	1 cut(s)	348
FaqI	GGGAC	3 cut(s)	22, 136, 301
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	270
HapII	CCGG	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	3 cut(s)	10, 149, 314
HpaII	CCGG	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	211, 279, 330
Hpy99I	CGWCG	2 cut(s)	224, 227
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	222, 258
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	182, 312, 357
HpySE526I	ACGT	2 cut(s)	222, 258
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	3 cut(s)	53, 162, 247
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	222, 258
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	59, 199
MlyI	GAGTC	3 cut(s)	4, 158, 323
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	6 cut(s)	191, 217, 223, 238, 283, 386
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	65, 169
MvaI	CCWGG	2 cut(s)	65, 169
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	3 cut(s)	55, 93, 363
PflMI	CCANNNNNTGG	2 cut(s)	64, 352
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	3 cut(s)	4, 157, 322
PpsI	GAGTC	3 cut(s)	4, 157, 322
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	63, 167
PspGI	CCWGG	2 cut(s)	63, 167
PspN4I	GGNNCC	3 cut(s)	55, 93, 363
PspPI	GGNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	4, 158, 323
ScrFI	CCNGG	2 cut(s)	65, 169
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	6 cut(s)	45, 147, 225, 252, 261, 363
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	59, 199
SsiI	CCGC	4 cut(s)	68, 89, 270, 320
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	63, 167
TaiI	ACGT	2 cut(s)	225, 261
TaqI	TCGA	2 cut(s)	126, 243
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	59, 199
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	327, 363
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	2 cut(s)	64, 352
VpaK11BI	GGWCC	1 cut(s)	279
XspI	CTAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.