Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002490.1

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Forward (+)

118993 .. 119668

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002490.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgagagagaagtacctggaattcgtggacaaattggaagagcatgggttgttatgtactcgggttttaggagaaggcgatgacccatcttctccaattggccgtagctggaagtctacgttcttgaccaaagacaaggacatagctaagaaaagttggaatggttggaacttggaagatggagtgaaatcaataatggggccaatttcggccgtcaaatacaacagcacaaggcagcgcaagatttggttcaacagcatggtagctgtatacataggctggaaagatgcaaggaatgatcatgtaaaggctgttaccttcgacaatggcacttcattgccggtggatatcatccacaactgcttgaagattcttgaagaggaaagtgttgccattccttggcagagagatgatgttttactattggatgatttggctgtccttcactctaggaaatcattcagtccgccttgcagaatgatggcttcacttggcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

166

Amino Acids

18.89

Weight (kDa)

7.72

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccI	GTMKAC	2 cut(s)	116, 270
AciI	CCGC	1 cut(s)	467
AcoI	YGGCCR	2 cut(s)	100, 210
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	2 cut(s)	14, 58
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	253, 367, 377
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	108, 146, 266
AluI	AGCT	3 cut(s)	108, 146, 266
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	100, 200, 210
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	94, 173, 475
BceAI	ACGGC	2 cut(s)	87, 197
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	351, 433
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	102, 202, 212
BsiEI	CGRYCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	3 cut(s)	102, 202, 212
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	3 cut(s)	102, 202, 212
BspLI	GGNNCC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	298
BssNAI	GTATAC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	398
Bst1107I	GTATAC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	33, 372
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	351, 433
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	271
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	102, 202, 212
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	351, 433
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	13, 57
CviAII	CATG	3 cut(s)	44, 259, 302
CviQI	GTAC	2 cut(s)	13, 57
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	2 cut(s)	100, 210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	33, 372
EarI	CTCTTC	2 cut(s)	33, 372
EciI	GGCGGA	1 cut(s)	456
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	3 cut(s)	47, 262, 305
FaiI	YATR	7 cut(s)	45, 55, 143, 260, 271, 275, 303
FatI	CATG	3 cut(s)	43, 258, 301
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	2 cut(s)	116, 270
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	2 cut(s)	338, 440
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	102, 202, 212
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	47, 262, 305
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	28, 117, 271
Hpy188III	TCNNGA	2 cut(s)	124, 374
Hpy8I	GTNNAC	3 cut(s)	28, 117, 271
HpyAV	CCTTC	3 cut(s)	68, 328, 452
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	290, 474
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	47, 262, 305
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	2, 29, 94, 265, 354
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	50, 81, 188, 379, 389
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	4 cut(s)	20, 32, 96, 204
MmeI	TCCRAC	2 cut(s)	137, 146
MnlI	CCTC	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	458
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	47, 262, 305
NlaIV	GGNNCC	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	14, 58
RsaNI	GTAC	2 cut(s)	13, 57
SapI	GCTCTTC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	6 cut(s)	18, 110, 122, 148, 268, 320
SfaNI	GCATC	1 cut(s)	277
Sse9I	AATT	4 cut(s)	20, 32, 96, 204
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	398
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	20, 32, 96, 204
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	2 cut(s)	116, 270
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.