Rroxscaffold_153G00436630

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000153
OG0005847
Physical Location & Seq
Reverse (-)
157804 .. 159008
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_153G00436630.1

Sequence Viewer

Length: 906 bp
ATGGCAGGAACTCTGGTGCAAACTCAAATCCCACAACAAAAGCTCTACGACGGAGCTCAGTTCCCGGCGGTTCTATCTCCGAGCCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCCAAACCATCGAAGCCCAAAGACCGTACCTTGAGGCCCAGCTCCGGCAATCCGGGGCTGTACTCCTCAGGGACTTTCCGGTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCTCGGGACCAACGTTGTGGGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGATGTGGAGCCTGGAAGTGGGGGAAACTCCCATTGTTCTGAGTCACATTGTCTACGAGAGGATGAAAGAGAAGTACCCGGAATTCGTCGAAAAATTGGAAGAGCATGGATTGTTGTATACTCGGGTTTTAGGCGAAGGCGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCTACATTCTTGACCAAAGATAAGAACATAGCTGAGCAAAGGGCTGCTAAGCTTGGCATGAAGCTGGAATGGTTGGAAGATGGAGTGAAATCAATAATGGGGCCAATCCCGGCCGTCAAATACGACAGCACAAGGCAGCGTAAGATGTGGTTCAACAGCATGGTAGCTGCATACACAGGCTGGGAAGATGCAAGGAATGATCCTGTAAAGGCTGTTACCTTTGGCAATGGCAACCCATTGCCGGCGGATGTCATCTACGACTGCTTGAAGATTCTTGAGGAGGAAAGTGTTGCCATTCCTTGGCAGAAGGGTGATGTTTTGCTGTTGGATAATTTGGCTGTCCTTCACTCTAGGAAATCGTTCACTCCGCCTCGCAGGGTGCTAGCTTCACTTTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

301

Amino Acids

33.46

Weight (kDa)

5.42

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 117 - 296 7.3e-14 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 804
AccI GTMKAC 3 cut(s) 381, 446, 506
AciI CCGC 6 cut(s) 68, 89, 264, 270, 749, 872
AclI AACGTT 1 cut(s) 286
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 2 cut(s) 490, 615
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 3 cut(s) 143, 177, 404
AfiI CCNNNNNNNGG 6 cut(s) 159, 260, 276, 346, 745, 804
AgsI TTSAA 3 cut(s) 217, 658, 772
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 9 cut(s) 43, 56, 157, 250, 536, 556, 568, 671, 890
AluI AGCT 9 cut(s) 43, 56, 157, 250, 536, 556, 568, 671, 890
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 2 cut(s) 276, 450
AoxI GGCC 5 cut(s) 150, 231, 490, 605, 615
ApeKI GCWGC 3 cut(s) 548, 640, 671
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 863
AspS9I GGNCC 3 cut(s) 151, 280, 605
AsuC2I CCSGG 4 cut(s) 65, 169, 407, 614
AsuHPI GGTGA 1 cut(s) 827
AsuNHI GCTAGC 1 cut(s) 886
AvaI CYCGRG 2 cut(s) 276, 450
AvaII GGWCC 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 2 cut(s) 58, 86
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 535, 652, 658
BccI CCATC 2 cut(s) 131, 578
BceAI ACGGC 2 cut(s) 477, 602
BciT130I CCWGG 1 cut(s) 341
BcnI CCSGG 4 cut(s) 65, 169, 407, 614
BfaI CTAG 2 cut(s) 855, 887
BisI GCNGC 4 cut(s) 270, 549, 641, 672
BlpI GCTNAGC 2 cut(s) 537, 552
BlsI GCNGC 4 cut(s) 271, 550, 642, 673
Bme1390I CCNGG 5 cut(s) 65, 169, 341, 407, 614
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 2 cut(s) 276, 450
BmgT120I GGNCC 3 cut(s) 151, 280, 605
BmiI GGNNCC 6 cut(s) 93, 268, 281, 296, 338, 606
BmrFI CCNGG 5 cut(s) 65, 169, 341, 407, 614
BmsI GCATC 1 cut(s) 682
BmtI GCTAGC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu1102I GCTNAGC 2 cut(s) 537, 552
BpuEI CTTGAG 2 cut(s) 167, 800
BpuMI CCSGG 4 cut(s) 65, 169, 407, 614
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 168, 275, 493, 803
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 6 cut(s) 159, 260, 276, 346, 745, 804
Bse118I RCCGGY 1 cut(s) 745
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 736, 740
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 4 cut(s) 168, 275, 493, 803
BseGI GGATG 2 cut(s) 396, 757
BseLI CCNNNNNNNGG 6 cut(s) 159, 260, 276, 346, 745, 804
BseMI GCAATG 2 cut(s) 736, 740
BseMII CTCAG 4 cut(s) 71, 196, 359, 528
BseRI GAGGAG 3 cut(s) 170, 260, 797
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 535, 652, 658
BseYI CCCAGC 2 cut(s) 153, 684
Bsh1285I CGRYCG 1 cut(s) 618
BshFI GGCC 5 cut(s) 152, 233, 492, 607, 617
BshNI GGYRCC 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 2 cut(s) 276, 450
BsiSI CCGG 7 cut(s) 65, 160, 168, 194, 407, 614, 746
BslFI GGGAC 2 cut(s) 200, 293
BslI CCNNNNNNNGG 6 cut(s) 159, 260, 276, 346, 745, 804
BsmFI GGGAC 2 cut(s) 200, 293
BsnI GGCC 5 cut(s) 152, 233, 492, 607, 617
BsoBI CYCGRG 2 cut(s) 276, 450
Bsp1286I GDGCHC 2 cut(s) 58, 86
Bsp143I GATC 1 cut(s) 703
Bsp1720I GCTNAGC 2 cut(s) 537, 552
BspACI CCGC 6 cut(s) 68, 89, 264, 270, 749, 872
BspANI GGCC 5 cut(s) 152, 233, 492, 607, 617
BspCNI CTCAG 4 cut(s) 70, 195, 360, 529
BspLI GGNNCC 6 cut(s) 93, 268, 281, 296, 338, 606
BspOI GCTAGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 698
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 736, 740
BsrFI RCCGGY 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 168, 275, 493, 803
BssMI GATC 1 cut(s) 703
BssNAI GTATAC 1 cut(s) 447
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 803
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 747, 888
BstDEI CTNAG 5 cut(s) 57, 182, 368, 537, 552
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 396, 757
BstKTI GATC 1 cut(s) 706
BstMBI GATC 1 cut(s) 703
BstMCI CGRYCG 1 cut(s) 618
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 5 cut(s) 63, 167, 339, 405, 612
BstV1I GCAGC 3 cut(s) 535, 652, 658
BstXI CCANNNNNNTGG 1 cut(s) 290
BstZ17I GTATAC 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 615
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 152, 233, 492, 607, 617
BtgI CCRYGG 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 396, 757
Cac8I GCNNGC 2 cut(s) 747, 888
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 151, 280, 605
Csp6I GTAC 3 cut(s) 142, 176, 403
CviAII CATG 3 cut(s) 434, 562, 664
CviQI GTAC 3 cut(s) 142, 176, 403
DdeI CTNAG 5 cut(s) 57, 182, 368, 537, 552
DpnI GATC 1 cut(s) 705
DpnII GATC 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 490, 615
EagI CGGCCG 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 3 cut(s) 279, 764, 861
Ecl136II GAGCTC 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 803
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 58, 86
Eco47I GGWCC 1 cut(s) 280
Eco52I CGGCCG 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 2 cut(s) 276, 450
EcoICRI GAGCTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 803
EcoT38I GRGCYC 2 cut(s) 58, 86
ErhI CCWWGG 1 cut(s) 803
FaeI CATG 3 cut(s) 437, 565, 667
FaiI YATR 7 cut(s) 258, 435, 447, 533, 563, 665, 676
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 2 cut(s) 200, 293
FatI CATG 3 cut(s) 433, 561, 663
FblI GTMKAC 3 cut(s) 381, 446, 506
Fnu4HI GCNGC 4 cut(s) 270, 549, 641, 672
FokI GGATG 2 cut(s) 403, 764
FriOI GRGCYC 2 cut(s) 58, 86
Fsp4HI GCNGC 4 cut(s) 270, 549, 641, 672
FspBI CTAG 2 cut(s) 855, 887
GluI GCNGC 4 cut(s) 270, 549, 641, 672
GsaI CCCAGC 2 cut(s) 157, 688
HaeIII GGCC 5 cut(s) 152, 233, 492, 607, 617
HapII CCGG 7 cut(s) 65, 160, 168, 194, 407, 614, 746
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 437, 565, 667
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 2 cut(s) 370, 775
HpaII CCGG 7 cut(s) 65, 160, 168, 194, 407, 614, 746
HphI GGTGA 1 cut(s) 827
Hpy166II GTNNAC 4 cut(s) 382, 447, 507, 867
Hpy188I TCNGA 4 cut(s) 81, 211, 369, 486
Hpy188III TCNNGA 3 cut(s) 278, 514, 779
Hpy8I GTNNAC 4 cut(s) 382, 447, 507, 867
Hpy99I CGWCG 4 cut(s) 53, 224, 227, 419
HpyAV CCTTC 6 cut(s) 106, 244, 458, 486, 805, 857
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 222, 286
HpyCH4V TGCA 3 cut(s) 19, 674, 695
HpyF3I CTNAG 5 cut(s) 57, 182, 368, 537, 552
HpySE526I ACGT 2 cut(s) 222, 286
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 437, 565, 667
KroI GCCGGC 1 cut(s) 745
KroNI GCCGGC 1 cut(s) 747
Kzo9I GATC 1 cut(s) 703
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 5 cut(s) 53, 162, 247, 266, 336
Lsp1109I GCAGC 3 cut(s) 535, 652, 658
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 855, 887
MaeII ACGT 2 cut(s) 222, 286
MaeIII GTNAC 2 cut(s) 371, 718
MalI GATC 1 cut(s) 705
MboI GATC 1 cut(s) 703
MboII GAAGA 5 cut(s) 440, 471, 593, 701, 784
MhlI GDGCHC 2 cut(s) 58, 86
MluCI AATT 4 cut(s) 199, 410, 422, 835
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 3 cut(s) 234, 558, 810
MroNI GCCGGC 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 863
MspI CCGG 7 cut(s) 65, 160, 168, 194, 407, 614, 746
MspR9I CCNGG 5 cut(s) 65, 169, 341, 407, 614
MvaI CCWGG 1 cut(s) 341
NaeI GCCGGC 1 cut(s) 747
NciI CCSGG 4 cut(s) 65, 169, 407, 614
NdeII GATC 1 cut(s) 703
NgoMIV GCCGGC 1 cut(s) 745
NheI GCTAGC 1 cut(s) 886
NlaIII CATG 3 cut(s) 437, 565, 667
NlaIV GGNNCC 6 cut(s) 93, 268, 281, 296, 338, 606
NmuCI GTSAC 1 cut(s) 371
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 1 cut(s) 775
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 4 cut(s) 271, 550, 642, 673
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 2 cut(s) 153, 684
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 6 cut(s) 93, 268, 281, 296, 338, 606
PspPI GGNCC 3 cut(s) 151, 280, 605
RsaI GTAC 3 cut(s) 143, 177, 404
RsaNI GTAC 3 cut(s) 142, 176, 403
SacI GAGCTC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 4 cut(s) 270, 549, 641, 672
Sau3AI GATC 1 cut(s) 703
Sau96I GGNCC 3 cut(s) 151, 280, 605
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 5 cut(s) 65, 169, 341, 407, 614
SduI GDGCHC 2 cut(s) 58, 86
SfaNI GCATC 1 cut(s) 682
SinI GGWCC 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 146, 779
SmoI CTYRAG 2 cut(s) 146, 779
Sse9I AATT 4 cut(s) 199, 410, 422, 835
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 6 cut(s) 68, 89, 264, 270, 749, 872
SspMI CTAG 2 cut(s) 855, 887
SstI GAGCTC 1 cut(s) 58
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 5 cut(s) 63, 167, 339, 405, 612
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 225, 289
TaqI TCGA 3 cut(s) 126, 243, 417
TasI AATT 4 cut(s) 199, 410, 422, 835
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 775
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 548, 640, 671
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 407, 578
TspGWI ACGGA 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 804
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 410
XmiI GTMKAC 3 cut(s) 381, 446, 506
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 2 cut(s) 855, 887
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.