RLG00000019878

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005847
Physical Location & Seq
Forward (+)
57889659 .. 57890819
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019878

Sequence Viewer

Length: 975 bp
ATGGCAGGAACTCTGGTGCAAACTCAAATCCCACAGCAAAAGCTCTACGACGGAGTTCAGTTCCCGGCGGTTCTATCTCCGAGCCCTGCGGTTCCCTTCACTCTCTCTGCTTTGACCCAAACCATCGAAGCCCAAAGACCGTACCTTGAGGCCCAGCTCCGGCAATCCGGGGCTGTACTCCTCAGGGGCTTTCCGGTCAATTCAGCCTCCGACTTCAACGACGTCGTTGAGGCCTTCGGCTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCTCGGACCAACGTCGTGGGTCGGGTTTTCACCGCCAATGAGTCCCCGCCCGACCAGAAGATTCCGTTTCACCACGAAATGGCTCAGGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCCCATTGTTCTGAGTCACGTTGTGTATGAGAGGATGAAAGAGAAGTACCCGGAATTCGTGGACAAATTGGAAGAGCATGGATTGTTGTATACTCGGGTTTTAGGCGAAGGCGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCCACATTCTTGACCAAAGATAAGAACATAGCTGAGCAAAGGGCCGCTAAGCTTGGCATGAAGTTGGAATGGTTGGAAGATGGAGTGAAATCAATAATGGGGCCAATCCCGGCGGTCAAGTACGACAGCACAAGGCAGCGCAAGATTTGGTTCAACAGCATGGTAGCTGCATACACAGGCTGGGAAGACGCAAGGAATGATCCTGTAAAGGCTGTCACCTTTGGCAGTGGCAACCCATTGCCGGCGGATATCATCTACGACTGCTTGAAGATTCTTGAAGACGAAAGTGTTGCCATTCCTTGGCAGAAGGGTGATGTTTTGCTGTTGGATAATTTGGCTGTCCTTCACTCTAGGAAATCGTTCACTCCGCCTCGCAGGGTGCTAGCTTCACTTTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

325

Amino Acids

35.92

Weight (kDa)

5.53

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 319 1.5e-33 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 352, 873
AccI GTMKAC 1 cut(s) 515
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 4 cut(s) 143, 177, 473, 695
AfiI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
AgsI TTSAA 4 cut(s) 217, 727, 841, 851
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 7 cut(s) 43, 157, 250, 605, 625, 740, 959
AluI AGCT 7 cut(s) 43, 157, 250, 605, 625, 740, 959
AlwI GGATC 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 5 cut(s) 150, 231, 559, 615, 674
ApeKI GCWGC 2 cut(s) 709, 740
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 932
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 4 cut(s) 151, 279, 615, 674
AsuC2I CCSGG 4 cut(s) 65, 169, 476, 683
AsuHPI GGTGA 4 cut(s) 295, 335, 781, 896
AsuNHI GCTAGC 1 cut(s) 955
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 765, 858
BbvI GCAGC 2 cut(s) 721, 727
BccI CCATC 2 cut(s) 131, 647
BceAI ACGGC 1 cut(s) 546
BcgI CGANNNNNNTGC 2 cut(s) 845, 879
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 4 cut(s) 65, 169, 476, 683
BfaI CTAG 2 cut(s) 924, 956
BisI GCNGC 4 cut(s) 270, 618, 710, 741
BlpI GCTNAGC 2 cut(s) 606, 621
BlsI GCNGC 4 cut(s) 271, 619, 711, 742
Bme1390I CCNGG 5 cut(s) 65, 169, 408, 476, 683
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 4 cut(s) 151, 279, 615, 674
BmiI GGNNCC 5 cut(s) 93, 268, 363, 405, 675
BmrFI CCNGG 5 cut(s) 65, 169, 408, 476, 683
BmtI GCTAGC 1 cut(s) 959
BoxI GACNNNNGTC 1 cut(s) 284
BpiI GAAGAC 2 cut(s) 765, 858
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 2 cut(s) 606, 621
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 4 cut(s) 65, 169, 476, 683
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 168, 275, 562, 872
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
Bse118I RCCGGY 1 cut(s) 814
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 4 cut(s) 168, 275, 562, 872
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 4 cut(s) 196, 371, 428, 597
BseRI GAGGAG 2 cut(s) 170, 260
BseXI GCAGC 2 cut(s) 721, 727
BseYI CCCAGC 2 cut(s) 153, 753
BshFI GGCC 5 cut(s) 152, 233, 561, 617, 676
BshNI GGYRCC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 7 cut(s) 65, 160, 168, 194, 476, 683, 815
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 7 cut(s) 159, 260, 276, 352, 413, 814, 873
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 5 cut(s) 152, 233, 561, 617, 676
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 772
Bsp1720I GCTNAGC 2 cut(s) 606, 621
BspANI GGCC 5 cut(s) 152, 233, 561, 617, 676
BspCNI CTCAG 4 cut(s) 195, 370, 429, 598
BspLI GGNNCC 5 cut(s) 93, 268, 363, 405, 675
BspOI GCTAGC 1 cut(s) 959
BspPI GGATC 1 cut(s) 767
BspQI GCTCTTC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 814
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 4 cut(s) 168, 275, 562, 872
BssMI GATC 1 cut(s) 772
BssNAI GTATAC 1 cut(s) 516
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 872
Bst1107I GTATAC 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 816, 957
BstDEI CTNAG 5 cut(s) 182, 357, 437, 606, 621
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 1 cut(s) 775
BstMBI GATC 1 cut(s) 772
BstNI CCWGG 1 cut(s) 408
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 5 cut(s) 63, 167, 406, 474, 681
BstV1I GCAGC 2 cut(s) 721, 727
BstV2I GAAGAC 2 cut(s) 765, 858
BstXI CCANNNNNNTGG 1 cut(s) 289
BstZ17I GTATAC 1 cut(s) 516
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 152, 233, 561, 617, 676
BtgI CCRYGG 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 465
BtsI GCAGTG 1 cut(s) 805
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 816, 957
CfoI GCGC 1 cut(s) 714
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 4 cut(s) 151, 279, 615, 674
CseI GACGC 1 cut(s) 770
Csp6I GTAC 4 cut(s) 142, 176, 472, 694
CviAII CATG 3 cut(s) 503, 631, 733
CviQI GTAC 4 cut(s) 142, 176, 472, 694
DdeI CTNAG 5 cut(s) 182, 357, 437, 606, 621
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 3 cut(s) 279, 833, 930
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 406
EcoRV GATATC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 872
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 3 cut(s) 506, 634, 736
FaiI YATR 8 cut(s) 258, 453, 504, 516, 602, 632, 734, 745
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 502, 630, 732
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 4 cut(s) 270, 618, 710, 741
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 270, 618, 710, 741
FspBI CTAG 2 cut(s) 924, 956
GlaI GCGC 1 cut(s) 713
GluI GCNGC 4 cut(s) 270, 618, 710, 741
GsaI CCCAGC 2 cut(s) 157, 757
HaeIII GGCC 5 cut(s) 152, 233, 561, 617, 676
HapII CCGG 7 cut(s) 65, 160, 168, 194, 476, 683, 815
HgaI GACGC 1 cut(s) 770
HhaI GCGC 1 cut(s) 714
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 506, 634, 736
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 314, 334, 439, 844
HpaII CCGG 7 cut(s) 65, 160, 168, 194, 476, 683, 815
HphI GGTGA 4 cut(s) 295, 335, 781, 896
Hpy166II GTNNAC 4 cut(s) 487, 516, 576, 936
Hpy188I TCNGA 5 cut(s) 81, 211, 279, 438, 555
Hpy188III TCNNGA 2 cut(s) 583, 848
Hpy8I GTNNAC 4 cut(s) 487, 516, 576, 936
Hpy99I CGWCG 4 cut(s) 53, 224, 227, 290
HpyAV CCTTC 6 cut(s) 106, 244, 527, 555, 874, 926
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 3 cut(s) 222, 285, 444
HpyCH4V TGCA 3 cut(s) 19, 743, 969
HpyF3I CTNAG 5 cut(s) 182, 357, 437, 606, 621
HpySE526I ACGT 3 cut(s) 222, 285, 444
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 506, 634, 736
HspAI GCGC 1 cut(s) 712
KroI GCCGGC 1 cut(s) 814
KroNI GCCGGC 1 cut(s) 816
Kzo9I GATC 1 cut(s) 772
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 4 cut(s) 162, 247, 266, 403
Lsp1109I GCAGC 2 cut(s) 721, 727
MaeI CTAG 2 cut(s) 924, 956
MaeII ACGT 3 cut(s) 222, 285, 444
MaeIII GTNAC 2 cut(s) 440, 787
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 7 cut(s) 343, 509, 540, 662, 770, 853, 863
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 4 cut(s) 199, 479, 491, 904
MlyI GAGTC 2 cut(s) 323, 448
MmeI TCCRAC 4 cut(s) 234, 618, 627, 879
MnlI CCTC 9 cut(s) 142, 191, 217, 223, 238, 285, 385, 450, 954
MroNI GCCGGC 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 932
MspI CCGG 7 cut(s) 65, 160, 168, 194, 476, 683, 815
MspR9I CCNGG 5 cut(s) 65, 169, 408, 476, 683
MvaI CCWGG 1 cut(s) 408
NaeI GCCGGC 1 cut(s) 816
NciI CCSGG 4 cut(s) 65, 169, 476, 683
NdeII GATC 1 cut(s) 772
NgoMIV GCCGGC 1 cut(s) 814
NheI GCTAGC 1 cut(s) 955
NlaIII CATG 3 cut(s) 506, 634, 736
NlaIV GGNNCC 5 cut(s) 93, 268, 363, 405, 675
NmuCI GTSAC 2 cut(s) 440, 787
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 932
PfeI GAWTC 2 cut(s) 334, 844
PflMI CCANNNNNTGG 2 cut(s) 352, 873
PkrI GCNGC 4 cut(s) 271, 619, 711, 742
PleI GAGTC 2 cut(s) 322, 447
PpsI GAGTC 2 cut(s) 322, 447
PshAI GACNNNNGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 406
PspFI CCCAGC 2 cut(s) 153, 753
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 5 cut(s) 93, 268, 363, 405, 675
PspPI GGNCC 4 cut(s) 151, 279, 615, 674
RsaI GTAC 4 cut(s) 143, 177, 473, 695
RsaNI GTAC 4 cut(s) 142, 176, 472, 694
SapI GCTCTTC 1 cut(s) 492
SatI GCNGC 4 cut(s) 270, 618, 710, 741
Sau3AI GATC 1 cut(s) 772
Sau96I GGNCC 4 cut(s) 151, 279, 615, 674
SchI GAGTC 2 cut(s) 323, 448
ScrFI CCNGG 5 cut(s) 65, 169, 408, 476, 683
SduI GDGCHC 1 cut(s) 86
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 199, 479, 491, 904
SseBI AGGCCT 1 cut(s) 233
SspMI CTAG 2 cut(s) 924, 956
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 5 cut(s) 63, 167, 406, 474, 681
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 3 cut(s) 225, 288, 447
TaqI TCGA 2 cut(s) 126, 243
TasI AATT 4 cut(s) 199, 479, 491, 904
TatI WGTACW 1 cut(s) 175
TauI GCSGC 2 cut(s) 272, 620
TfiI GAWTC 2 cut(s) 334, 844
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 2 cut(s) 440, 787
TseI GCWGC 2 cut(s) 709, 740
Tsp45I GTSAC 2 cut(s) 440, 787
TspDTI ATGAA 2 cut(s) 476, 647
TspGWI ACGGA 2 cut(s) 66, 327
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 2 cut(s) 352, 873
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 932
XspI CTAG 2 cut(s) 924, 956
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.