Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Forward (+)

58048618 .. 58051059

Gene Structure 2442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTCAGGTATATTCGCATGCTCATTGCATTGTCGGTTCTTTGTTTTCCGTGAAGATGAGAGAGAAGTACCTGGAATTCGTGGACAAATTGGAAGAGCATGGGTTGTTATGTACTCGGGTTTTAGGAGAAGGCGATGACCCATCTTCTCCAATTGGCCGTAGCTGGAAGTCTACATTCTTGACCAAAGACAAGGACATAGCTAAGCAGAGTTGGAATGGTTGGAACTTGGAAGATGGAGTGAAATCAATAATGGGGCCAATTTCGGCCGTCAAATACAATAGCACAAGGCAGCGCAAGATTTGGTTCAACAGCATGGTAGCTGTATACATAGGCTGGAAAGATGCAAGGAATGATCATGTAAAGGCTGTTACCTTCGGCAATGGCACTTCATTGCCGATGGATATCATCCACAACTGCTTGAAGATTCTTGAAGAGGAAAGTGTTGTCATTCCTTGGCAGAGAGATGATGTTTTACTATTGGATGATTTGGCTGTCCTTCACTCTAGGAAATCATTCAGTCCGCCTTGCAGAATGATGGCTTCACTTGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

185

Amino Acids

20.96

Weight (kDa)

8.32

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	173, 327
AciI	CCGC	1 cut(s)	524
AcoI	YGGCCR	2 cut(s)	157, 267
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	2 cut(s)	71, 115
AgsI	TTSAA	3 cut(s)	310, 424, 434
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	3 cut(s)	165, 203, 323
AluI	AGCT	3 cut(s)	165, 203, 323
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	3 cut(s)	157, 257, 267
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	4 cut(s)	151, 230, 394, 532
BceAI	ACGGC	2 cut(s)	144, 254
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	455
Bse3DI	GCAATG	3 cut(s)	25, 388, 392
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	408, 490
BseJI	GATNNNNATC	1 cut(s)	404
BseMI	GCAATG	3 cut(s)	25, 388, 392
BseMII	CTCAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	304
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	159, 259, 269
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	117
BsnI	GGCC	3 cut(s)	159, 259, 269
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	355
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	3 cut(s)	159, 259, 269
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	90
BsrDI	GCAATG	3 cut(s)	25, 388, 392
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	1 cut(s)	355
BssNAI	GTATAC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	455
Bst1107I	GTATAC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	90, 429
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	6, 204
BstF5I	GGATG	2 cut(s)	408, 490
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMCI	CGRYCG	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	304
BstZ17I	GTATAC	1 cut(s)	328
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	159, 259, 269
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	408, 490
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	70, 114
CviAII	CATG	4 cut(s)	20, 101, 316, 359
CviQI	GTAC	2 cut(s)	70, 114
DdeI	CTNAG	2 cut(s)	6, 204
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	157, 267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	90, 429
EarI	CTCTTC	2 cut(s)	90, 429
EciI	GGCGGA	1 cut(s)	513
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	4 cut(s)	23, 104, 319, 362
FaiI	YATR	9 cut(s)	13, 21, 102, 112, 200, 317, 328, 332, 360
FatI	CATG	4 cut(s)	19, 100, 315, 358
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	173, 327
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	395, 497
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	159, 259, 269
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	4 cut(s)	23, 104, 319, 362
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	427
Hpy166II	GTNNAC	3 cut(s)	85, 174, 328
Hpy188III	TCNNGA	2 cut(s)	181, 431
Hpy8I	GTNNAC	3 cut(s)	85, 174, 328
HpyAV	CCTTC	3 cut(s)	125, 385, 509
HpyCH4V	TGCA	3 cut(s)	30, 347, 531
HpyF3I	CTNAG	2 cut(s)	6, 204
Hsp92II	CATG	4 cut(s)	23, 104, 319, 362
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	4 cut(s)	59, 86, 151, 322
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	6 cut(s)	67, 107, 138, 245, 436, 446
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	4 cut(s)	77, 89, 153, 261
MmeI	TCCRAC	2 cut(s)	194, 203
MnlI	CCTC	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	4 cut(s)	23, 104, 319, 362
NlaIV	GGNNCC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	71, 115
RsaNI	GTAC	2 cut(s)	70, 114
SapI	GCTCTTC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	6 cut(s)	12, 75, 167, 205, 325, 377
SfaNI	GCATC	1 cut(s)	334
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	4 cut(s)	77, 89, 153, 261
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	455
TasI	AATT	4 cut(s)	77, 89, 153, 261
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	40
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	2 cut(s)	173, 327
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.