Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7662186 .. 7664098

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCGAATTGGAGACATAAACTATGGAGAAAATTGAGCTCATTTCAGAGAGCTAGTTACTCAACTACATCTTCAAGAAACAACAAATTAAAGCTTGATGACCTTAGAAAACTCCGGCCAATGATTCTAAAGAGAATCGAAAATCGAGCTAAAGATTACCCGGTTAAAGAGATTGTTCCTGTAGCTGAAGAAATCCTTATAGCTAGAAAGAATCTAATCAGTAACATCGCCGCTCTTCTTAAGGTGTTTCCTGTCTTGACATGCAAATTCTGTTCAGAAGTGTTTGTTGGCAAAGAAGGACATTTGATTGAGACATGTCGTAGTTATATACGGCGTGGTAACAATAGGCTACACGAATGGGTTCCAGGTTCCATAAACGATATACTTGTGCCAGTTGAATCCTATCACTTACACAACATCTCTCAAGGTGTTATCAGACACCAAGAGAGGTTTGATTATGATCGTGTTCCCGCAATCTTGGAACTATGTTGTCAAGCAGGAGCCATCCATCCTGAAGAAATCCTTCAATATTCGGAAATTCACGATAACCCGCAAATCTCTGAGGAAGATATCAGGAGTTTACCCGCTGGAGATCTCAAATATGTTGGGGCAAACGCTCTTATGGCGTGGGAGAAAGTGAGAGCTGGTGTGAAGAAACTATTGCTTGTTTATCCTTCAAAAGTTTGCAAACGATGTAAGGAGGTTCATGTGGGTCCGAGTGGTCATAAAGCTCGGTTATGTGGTGTGTTCAAATATGAGAGCTGGCGCGGCACTCATTACTGGGAAAAAGCCGGTGTGAATGATTTGGTACCCGAGAAAATGGTGTGGCACCGGAGGCCTCAGGACCCAGTGGTTCTTGTTGACGAAGGGCGGAGTTATTATGGGCATGCCCCTGCTATTGTGAGCCTTTGTAGCCATACCGGTGCCATTGTTCCTGTAAAATACGCTTGCAAGATGAAGCCCCAAGGTTTATCTTTTTCTTTCACTAATCCAGTTCCAAATCTCGAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

337

Amino Acids

38.54

Weight (kDa)

9.35

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	33 - 168	6.7e-39	APO RNA-binding
APO_RNA-bind	PF05634	202 - 319	2.3e-15	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	808
AccB1I	GGYRCC	3 cut(s)	808, 828, 923
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	768
AciI	CCGC	6 cut(s)	231, 471, 551, 585, 768, 871
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	266, 537
AcuI	CTGAAG	2 cut(s)	207, 534
AfaI	GTAC	1 cut(s)	810
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	314
AgeI	ACCGGT	1 cut(s)	920
AgsI	TTSAA	5 cut(s)	75, 398, 527, 678, 751
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	9 cut(s)	39, 53, 94, 149, 185, 203, 644, 731, 762
AluI	AGCT	9 cut(s)	39, 53, 94, 149, 185, 203, 644, 731, 762
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	2 cut(s)	7, 305
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	2 cut(s)	116, 836
ApoI	RAATTY	2 cut(s)	266, 537
AsiGI	ACCGGT	1 cut(s)	920
Asp700I	GAANNNNTTC	2 cut(s)	360, 522
Asp718I	GGTACC	1 cut(s)	808
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	713, 844
AsuC2I	CCSGG	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	2 cut(s)	713, 844
AxyI	CCTNAGG	1 cut(s)	840
BanI	GGYRCC	3 cut(s)	808, 828, 923
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	2 cut(s)	512, 516
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	7, 305
BfaI	CTAG	2 cut(s)	54, 204
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	2 cut(s)	231, 769
BlsI	GCNGC	2 cut(s)	232, 770
Bme1390I	CCNGG	2 cut(s)	161, 366
Bme18I	GGWCC	2 cut(s)	713, 844
BmeT110I	CYCGRG	1 cut(s)	812
BmgT120I	GGNCC	2 cut(s)	713, 844
BmiI	GGNNCC	8 cut(s)	363, 370, 502, 714, 810, 830, 846, 925
BmrFI	CCNGG	2 cut(s)	161, 366
BmrI	ACTGGG	2 cut(s)	790, 842
BmuI	ACTGGG	2 cut(s)	790, 842
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	964
BsaWI	WCCGGW	2 cut(s)	831, 920
Bse118I	RCCGGY	2 cut(s)	791, 920
Bse1I	ACTGG	4 cut(s)	392, 785, 848, 992
Bse21I	CCTNAGG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	964
BseGI	GGATG	2 cut(s)	504, 508
BseJI	GATNNNNATC	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	552, 854
BseNI	ACTGG	4 cut(s)	392, 785, 848, 992
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	118, 838
BshNI	GGYRCC	3 cut(s)	808, 828, 923
BshTI	ACCGGT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	5 cut(s)	115, 161, 792, 832, 921
BsmAI	GTCTC	2 cut(s)	7, 305
BsnI	GGCC	2 cut(s)	118, 838
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	460, 592
BspACI	CCGC	6 cut(s)	231, 471, 551, 585, 768, 871
BspANI	GGCC	2 cut(s)	118, 838
BspCNI	CTCAG	2 cut(s)	553, 853
BspFNI	CGCG	1 cut(s)	768
BspLI	GGNNCC	8 cut(s)	363, 370, 502, 714, 810, 830, 846, 925
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	3 cut(s)	808, 828, 923
BspTI	CTTAAG	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	791, 920
BsrI	ACTGG	4 cut(s)	392, 785, 848, 992
BssAI	RCCGGY	2 cut(s)	791, 920
BssECI	CCNNGG	1 cut(s)	964
BssMI	GATC	2 cut(s)	460, 592
BssT1I	CCWWGG	1 cut(s)	964
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	764, 888, 949
BstDEI	CTNAG	3 cut(s)	104, 561, 840
BstF5I	GGATG	2 cut(s)	504, 508
BstFNI	CGCG	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	2 cut(s)	463, 595
BstMAI	GTCTC	2 cut(s)	7, 305
BstMBI	GATC	2 cut(s)	460, 592
BstMWI	GCNNNNNNNGC	4 cut(s)	623, 768, 835, 912
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	3 cut(s)	264, 318, 890
BstSCI	CCNGG	2 cut(s)	159, 364
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	118, 838
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	504, 508
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	3 cut(s)	764, 888, 949
CfoI	GCGC	1 cut(s)	768
Cfr10I	RCCGGY	2 cut(s)	791, 920
Cfr13I	GGNCC	2 cut(s)	713, 844
Csp6I	GTAC	1 cut(s)	809
CspAI	ACCGGT	1 cut(s)	920
CviAII	CATG	4 cut(s)	261, 315, 707, 887
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	3 cut(s)	104, 561, 840
DpnI	GATC	2 cut(s)	462, 594
DpnII	GATC	2 cut(s)	460, 592
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	886
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	964
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	713, 844
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	207, 534
Eco81I	CCTNAGG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	964
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	964
FaeI	CATG	4 cut(s)	264, 318, 710, 890
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 507, 539
FatI	CATG	4 cut(s)	260, 314, 706, 886
FauI	CCCGC	3 cut(s)	478, 558, 592
Fnu4HI	GCNGC	2 cut(s)	231, 769
FokI	GGATG	2 cut(s)	491, 495
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	231, 769
FspBI	CTAG	2 cut(s)	54, 204
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	2 cut(s)	231, 769
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	118, 838
HapII	CCGG	5 cut(s)	115, 161, 792, 832, 921
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	4 cut(s)	264, 318, 710, 890
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	4 cut(s)	124, 135, 211, 398
HpaII	CCGG	5 cut(s)	115, 161, 792, 832, 921
Hpy166II	GTNNAC	2 cut(s)	581, 862
Hpy188I	TCNGA	6 cut(s)	48, 277, 437, 535, 562, 717
Hpy188III	TCNNGA	7 cut(s)	75, 256, 512, 542, 574, 842, 1004
Hpy8I	GTNNAC	2 cut(s)	581, 862
HpyAV	CCTTC	4 cut(s)	290, 533, 684, 860
HpyCH4IV	ACGT	1 cut(s)	1010
HpyCH4V	TGCA	3 cut(s)	264, 687, 951
HpyF10VI	GCNNNNNNNGC	4 cut(s)	623, 768, 835, 912
HpyF3I	CTNAG	3 cut(s)	104, 561, 840
HpySE526I	ACGT	1 cut(s)	1010
Hsp92II	CATG	4 cut(s)	264, 318, 710, 890
HspAI	GCGC	1 cut(s)	766
KpnI	GGTACC	1 cut(s)	812
Kzo9I	GATC	2 cut(s)	460, 592
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	54, 204
MaeII	ACGT	1 cut(s)	1010
MaeIII	GTNAC	3 cut(s)	56, 221, 338
MalI	GATC	2 cut(s)	462, 594
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	460, 592
MboII	GAAGA	6 cut(s)	63, 200, 227, 527, 578, 664
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	5 cut(s)	7, 32, 86, 266, 537
MnlI	CCTC	5 cut(s)	441, 556, 694, 828, 849
MroXI	GAANNNNTTC	2 cut(s)	360, 522
MseI	TTAA	3 cut(s)	89, 165, 240
MslI	CAYNNNNRTG	1 cut(s)	921
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	5 cut(s)	115, 161, 792, 832, 921
MspR9I	CCNGG	2 cut(s)	161, 366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	623, 768, 835, 912
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	460, 592
NlaIII	CATG	4 cut(s)	264, 318, 710, 890
NlaIV	GGNNCC	8 cut(s)	363, 370, 502, 714, 810, 830, 846, 925
NspI	RCATGY	3 cut(s)	264, 318, 890
PaeI	GCATGC	1 cut(s)	890
PceI	AGGCCT	1 cut(s)	838
PciI	ACATGT	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	240
PdmI	GAANNNNTTC	2 cut(s)	360, 522
PfeI	GAWTC	4 cut(s)	124, 135, 211, 398
PinAI	ACCGGT	1 cut(s)	920
PkrI	GCNGC	2 cut(s)	232, 770
PpuMI	RGGWCCY	1 cut(s)	844
PscI	ACATGT	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	8 cut(s)	363, 370, 502, 714, 810, 830, 846, 925
PspPI	GGNCC	2 cut(s)	713, 844
PspPPI	RGGWCCY	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
RseI	CAYNNNNRTG	1 cut(s)	921
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	89, 165, 240
SatI	GCNGC	2 cut(s)	231, 769
Sau3AI	GATC	2 cut(s)	460, 592
Sau96I	GGNCC	2 cut(s)	713, 844
ScrFI	CCNGG	2 cut(s)	161, 366
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	713, 844
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	2 cut(s)	239, 423
SmoI	CTYRAG	2 cut(s)	239, 423
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	5 cut(s)	7, 32, 86, 266, 537
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	6 cut(s)	231, 471, 551, 585, 768, 871
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	54, 204
SstI	GAGCTC	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	2 cut(s)	159, 364
StyI	CCWWGG	1 cut(s)	964
TaiI	ACGT	1 cut(s)	1013
TaqI	TCGA	4 cut(s)	5, 138, 145, 1005
TasI	AATT	5 cut(s)	7, 32, 86, 266, 537
TauI	GCSGC	2 cut(s)	233, 771
TfiI	GAWTC	4 cut(s)	124, 135, 211, 398
Tru1I	TTAA	3 cut(s)	89, 165, 240
Tru9I	TTAA	3 cut(s)	89, 165, 240
TscAI	CASTG	1 cut(s)	855
TspDTI	ATGAA	2 cut(s)	695, 971
TspRI	CASTG	1 cut(s)	855
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	713, 844
XapI	RAATTY	2 cut(s)	266, 537
XceI	RCATGY	3 cut(s)	264, 318, 890
XmnI	GAANNNNTTC	2 cut(s)	360, 522
XspI	CTAG	2 cut(s)	54, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.