Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

61043139 .. 61046041

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGACCGTTGGGTGGAGGAGACCAACAAAAACAAAAACCAGGCGTTTCGAATCACCGTCTTCAATTAAAGGCATCGAATCCAATACCAAATCAAAACCCTCCCACACATCTCAAACCCAGAAACAAAAAAAAAAAACCTTCCTTTTCCGCCTAAAACCCACATCTGAGACCATGCAAGGAGCCCCAAAACAAAGCGAAGCTCCAGCAGAAGAAACAGGCGGTGCCGCCGCCGTGTTAATGGAAAAAAGCGGCGTCGTTCAGGAAGTTGTGGAAGCGCAGCCTCATCCCTACTCTTTCCACGTTTCGGGTCCTCGGAAATTGTGTTCCCCCAATTGGAGAGACAATATCAGCTCCAGTTGGAAGGATGGGAATTACAAAAGAACTGTCATTGCATGCTTCATACAAGCAATCTACTTACTTGAACTTGATAGACAGGAGAACAGAGATGCAGACAATGCTCTTGCCCCAAAGTGGTGGATACCTTTTAAGTATAAACTAACACAAACTTTAATTGATGAAAGGGATGGATCCATTTTTGGTGCAATTCTGGAGTGGGATCGATCTGCAGCACTTGCGGATTTTGTAGTCATGAGACCCAGTGGGGCACCAAGAGCTGTTTTAGCACTTAGAGGAACATTACTCAAAGGCCCAACGATGCGAAGGGATATCGAAGATGACCTTCGTTTTCTTGCTTGGGAGAGCTTGAAGGGATCTATCAGGTTCAAAGTAGCTCTGGAGGCTCTGAAAACTGTTGCAGAAAGGTATGGAAGCAGTAATGTATGCATTGCAGGCCATTCTTTAGGAGCTGGTTTTGCTCTACAAGTGGGAAAGGCATTAGCTAAAGAAGGGATGTATGTAGAGACTCACTTATTCAATCCACCTTCAGTTTCTCTGGCAATGAGCTTCCGAAATATTGGAGAGAAAGCAGGATTTGCTTGGAAGAGATTTAAATCAATGCTTCCTATGAGTAGTGAAACTCAGGTGAATAATGAGGAGGACAAGGCTATTGGTTTTGGATTGAAGAACTGGTTATCGGGTTTGAAGGGTCCTCCTGGTGTAGGATTGGGAAAATGGGTTCCTCATCTTTATGTAAATAATAGTGACTACATCTGCTGCTCTTATACTGACCCTGATGGAATAGAAGGAAATAATGCCGGGAAGGAGAATGTGGGTCCAAGTTCAACAACTGGGCAAGTAGCAGCAAAGCTATTTGTGATGTCAAAGGGAAACCAGAAGTTTCTGGAAGCTCATGGATTAGAGCAATGGTGGTCTGATGATCTGGAACTTCAGCTGGCTCTCCATAACAGTAAGCTCATCAGTAGGCAGCTGAAATCCTTGTATAGCCTTCCAGCTCCTCAACCAGCACTTCCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

458

Amino Acids

50.75

Weight (kDa)

9.45

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 604
AciI	CCGC	6 cut(s)	148, 219, 225, 228, 249, 575
AclWI	GGATC	4 cut(s)	522, 535, 564, 718
AcuI	CTGAAG	2 cut(s)	867, 1271
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	5 cut(s)	12, 304, 333, 471, 1058
AgsI	TTSAA	8 cut(s)	63, 422, 706, 724, 874, 1021, 1042, 1182
AjnI	CCWGG	2 cut(s)	38, 1051
AloI	GAACNNNNNNTCC	4 cut(s)	307, 339, 1059, 1091
Alw26I	GTCTC	5 cut(s)	13, 161, 333, 586, 854
AlwI	GGATC	4 cut(s)	522, 535, 564, 718
AoxI	GGCC	2 cut(s)	646, 790
ApeKI	GCWGC	5 cut(s)	277, 566, 1113, 1199, 1324
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	308, 647, 1046, 1172
AsuC2I	CCSGG	1 cut(s)	1156
AsuHPI	GGTGA	2 cut(s)	45, 994
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	3 cut(s)	308, 1046, 1172
BaeGI	GKGCMC	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	221, 604
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	289, 578, 1100, 1211, 1336
BccI	CCATC	3 cut(s)	359, 518, 1127
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	40, 1053
BciVI	GTATCC	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	1156
BcoDI	GTCTC	5 cut(s)	13, 161, 333, 586, 854
BfaI	CTAG	1 cut(s)	1371
BfmI	CTRYAG	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	8 cut(s)	225, 228, 250, 278, 567, 1114, 1200, 1325
BlsI	GCNGC	8 cut(s)	226, 229, 251, 279, 568, 1115, 1201, 1326
Bme1390I	CCNGG	3 cut(s)	40, 1053, 1156
Bme18I	GGWCC	3 cut(s)	308, 1046, 1172
BmgT120I	GGNCC	4 cut(s)	308, 647, 1046, 1172
BmiI	GGNNCC	8 cut(s)	181, 223, 309, 529, 606, 1047, 1077, 1173
BmrFI	CCNGG	3 cut(s)	40, 1053, 1156
BmrI	ACTGGG	2 cut(s)	591, 1197
BmsI	GCATC	3 cut(s)	81, 436, 645
BmuI	ACTGGG	2 cut(s)	591, 1197
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	4 cut(s)	186, 337, 569, 755
Bpu14I	TTCGAA	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	1156
Bsa29I	ATCGAT	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	949
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	3 cut(s)	13, 161, 586
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 304, 333, 471, 1058
Bse1I	ACTGG	4 cut(s)	354, 597, 1031, 1192
Bse3DI	GCAATG	4 cut(s)	387, 783, 903, 1268
Bse8I	GATNNNNATC	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	40, 1053
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	4 cut(s)	283, 370, 529, 855
BseJI	GATNNNNATC	1 cut(s)	949
BseLI	CCNNNNNNNGG	5 cut(s)	12, 304, 333, 471, 1058
BseMI	GCAATG	4 cut(s)	387, 783, 903, 1268
BseMII	CTCAG	2 cut(s)	156, 992
BseNI	ACTGG	4 cut(s)	354, 597, 1031, 1192
BseRI	GAGGAG	3 cut(s)	31, 1007, 1344
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	5 cut(s)	289, 578, 1100, 1211, 1336
BshFI	GGCC	2 cut(s)	648, 792
BshNI	GGYRCC	2 cut(s)	221, 604
BshVI	ATCGAT	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	1155
BslI	CCNNNNNNNGG	5 cut(s)	12, 304, 333, 471, 1058
BsmAI	GTCTC	5 cut(s)	13, 161, 333, 586, 854
BsnI	GGCC	2 cut(s)	648, 792
Bso31I	GGTCTC	3 cut(s)	13, 161, 586
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	184, 607
Bsp143I	GATC	5 cut(s)	527, 556, 560, 710, 1276
BspACI	CCGC	6 cut(s)	148, 219, 225, 228, 249, 575
BspANI	GGCC	2 cut(s)	648, 792
BspCNI	CTCAG	2 cut(s)	157, 991
BspDI	ATCGAT	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	8 cut(s)	181, 223, 309, 529, 606, 1047, 1077, 1173
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	4 cut(s)	522, 535, 564, 718
BspT104I	TTCGAA	1 cut(s)	48
BspT107I	GGYRCC	2 cut(s)	221, 604
BspTNI	GGTCTC	3 cut(s)	13, 161, 586
BsrDI	GCAATG	4 cut(s)	387, 783, 903, 1268
BsrI	ACTGG	4 cut(s)	354, 597, 1031, 1192
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	5 cut(s)	527, 556, 560, 710, 1276
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	40, 1053
Bst4CI	ACNGT	5 cut(s)	7, 57, 385, 751, 1307
Bst6I	CTCTTC	1 cut(s)	935
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	3 cut(s)	455, 572, 932
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	394, 790, 1293
BstDEI	CTNAG	3 cut(s)	165, 626, 978
BstENI	CCTNNNNNAGG	1 cut(s)	1056
BstF5I	GGATG	4 cut(s)	283, 370, 529, 855
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	530, 559, 563, 713, 1279
BstMAI	GTCTC	5 cut(s)	13, 161, 333, 586, 854
BstMBI	GATC	5 cut(s)	527, 556, 560, 710, 1276
BstMWI	GCNNNNNNNGC	8 cut(s)	455, 572, 611, 620, 737, 789, 812, 932
BstNI	CCWGG	2 cut(s)	40, 1053
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	38, 1051, 1154
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	5 cut(s)	289, 578, 1100, 1211, 1336
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	527, 710
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	2 cut(s)	527, 710
Bsu15I	ATCGAT	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	648, 792
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	4 cut(s)	283, 370, 529, 855
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	394, 790, 1293
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	308, 647, 1046, 1172
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	1 cut(s)	241
CviAII	CATG	4 cut(s)	172, 393, 589, 1250
DdeI	CTNAG	3 cut(s)	165, 626, 978
DpnI	GATC	5 cut(s)	529, 558, 562, 712, 1278
DpnII	GATC	5 cut(s)	527, 556, 560, 710, 1276
DraI	TTTAAA	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	3 cut(s)	13, 161, 586
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	3 cut(s)	308, 1046, 1172
Eco57I	CTGAAG	2 cut(s)	867, 1271
EcoNI	CCTNNNNNAGG	1 cut(s)	1056
EcoO109I	RGGNCCY	2 cut(s)	308, 1046
EcoRII	CCWGG	2 cut(s)	38, 1051
EcoRV	GATATC	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	4 cut(s)	175, 396, 592, 1253
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	4 cut(s)	171, 392, 588, 1249
Fnu4HI	GCNGC	8 cut(s)	225, 228, 250, 278, 567, 1114, 1200, 1325
FokI	GGATG	4 cut(s)	270, 377, 536, 862
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	8 cut(s)	225, 228, 250, 278, 567, 1114, 1200, 1325
FspBI	CTAG	1 cut(s)	1371
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	8 cut(s)	225, 228, 250, 278, 567, 1114, 1200, 1325
GsuI	CTGGAG	4 cut(s)	186, 337, 569, 755
HaeIII	GGCC	2 cut(s)	648, 792
HapII	CCGG	1 cut(s)	1155
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	175, 396, 592, 1253
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	3 cut(s)	50, 77, 862
HpaII	CCGG	1 cut(s)	1155
HphI	GGTGA	2 cut(s)	45, 994
Hpy188I	TCNGA	5 cut(s)	166, 315, 744, 908, 1273
Hpy188III	TCNNGA	6 cut(s)	260, 548, 589, 734, 1241, 1280
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	5 cut(s)	7, 57, 385, 751, 1307
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	8 cut(s)	175, 392, 449, 542, 566, 755, 783, 788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	455, 572, 611, 620, 737, 789, 812, 932
HpyF3I	CTNAG	3 cut(s)	165, 626, 978
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	175, 396, 592, 1253
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	5 cut(s)	527, 556, 560, 710, 1276
LmnI	GCTCC	5 cut(s)	179, 205, 356, 803, 1357
Lsp1109I	GCAGC	5 cut(s)	289, 578, 1100, 1211, 1336
LweI	GCATC	3 cut(s)	81, 436, 645
MaeI	CTAG	1 cut(s)	1371
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	1100
MalI	GATC	5 cut(s)	529, 558, 562, 712, 1278
MboI	GATC	5 cut(s)	527, 556, 560, 710, 1276
MboII	GAAGA	5 cut(s)	51, 221, 683, 952, 1033
MfeI	CAATTG	1 cut(s)	331
MflI	RGATCY	2 cut(s)	527, 710
MhlI	GDGCHC	2 cut(s)	184, 607
MluCI	AATT	6 cut(s)	63, 317, 331, 370, 510, 543
MlyI	GAGTC	1 cut(s)	856
MmeI	TCCRAC	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	785
MseI	TTAA	5 cut(s)	66, 236, 486, 509, 948
MslI	CAYNNNNRTG	1 cut(s)	1086
MspA1I	CMGCKG	2 cut(s)	1291, 1327
MspI	CCGG	1 cut(s)	1155
MspR9I	CCNGG	3 cut(s)	40, 1053, 1156
MunI	CAATTG	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	40, 1053
MwoI	GCNNNNNNNGC	8 cut(s)	455, 572, 611, 620, 737, 789, 812, 932
NciI	CCSGG	1 cut(s)	1156
NdeII	GATC	5 cut(s)	527, 556, 560, 710, 1276
NlaIII	CATG	4 cut(s)	175, 396, 592, 1253
NlaIV	GGNNCC	8 cut(s)	181, 223, 309, 529, 606, 1047, 1077, 1173
NmuCI	GTSAC	1 cut(s)	1100
NsiI	ATGCAT	1 cut(s)	785
NspI	RCATGY	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	396
PagI	TCATGA	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	50, 77
PkrI	GCNGC	8 cut(s)	226, 229, 251, 279, 568, 1115, 1201, 1326
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
PpuMI	RGGWCCY	2 cut(s)	308, 1046
Psp5II	RGGWCCY	2 cut(s)	308, 1046
Psp6I	CCWGG	2 cut(s)	38, 1051
PspGI	CCWGG	2 cut(s)	38, 1051
PspN4I	GGNNCC	8 cut(s)	181, 223, 309, 529, 606, 1047, 1077, 1173
PspPI	GGNCC	4 cut(s)	308, 647, 1046, 1172
PspPPI	RGGWCCY	2 cut(s)	308, 1046
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	527, 710
PvuII	CAGCTG	2 cut(s)	1291, 1327
RseI	CAYNNNNRTG	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	66, 236, 486, 509, 948
SatI	GCNGC	8 cut(s)	225, 228, 250, 278, 567, 1114, 1200, 1325
Sau3AI	GATC	5 cut(s)	527, 556, 560, 710, 1276
Sau96I	GGNCC	4 cut(s)	308, 647, 1046, 1172
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	3 cut(s)	40, 1053, 1156
SduI	GDGCHC	2 cut(s)	184, 607
SfaNI	GCATC	3 cut(s)	81, 436, 645
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	3 cut(s)	308, 1046, 1172
SmiI	ATTTAAAT	1 cut(s)	949
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	6 cut(s)	63, 317, 331, 370, 510, 543
SsiI	CCGC	6 cut(s)	148, 219, 225, 228, 249, 575
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	1 cut(s)	1371
StyD4I	CCNGG	3 cut(s)	38, 1051, 1154
SwaI	ATTTAAAT	1 cut(s)	949
TaaI	ACNGT	5 cut(s)	7, 57, 385, 751, 1307
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	48, 75, 559, 669
TasI	AATT	6 cut(s)	63, 317, 331, 370, 510, 543
TauI	GCSGC	3 cut(s)	227, 230, 252
TfiI	GAWTC	2 cut(s)	50, 77
Tru1I	TTAA	5 cut(s)	66, 236, 486, 509, 948
Tru9I	TTAA	5 cut(s)	66, 236, 486, 509, 948
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	1100
TseI	GCWGC	5 cut(s)	277, 566, 1113, 1199, 1324
Tsp45I	GTSAC	1 cut(s)	1100
TspDTI	ATGAA	2 cut(s)	388, 531
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	3 cut(s)	308, 1046, 1172
XagI	CCTNNNNNAGG	1 cut(s)	1056
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	1 cut(s)	1371
Zsp2I	ATGCAT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.