Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

9850495 .. 9852994

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1026000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCACTGAGGAAGAAATTGTGCGAGAGTTCCAATTTCAATGGCAAAATTATGTACAGCTTTGCAAGGTATTACAGCTCAAAGATGGACTTAAGGAAGCTAAAGGCTATGATTCAGAAGAGAATCCAAAACTGGGCTAAAGGTTACCCAGTGCCTGCCATGGTACCAGTGGCCGAGGAGGTCCTTGATTCCCGGAGGCTTGTTATGCAAGGTGTCTCTACTCTCCTCAAAATGATAACAGTTTTGGCCTGCAAGTTCTGTCCAGAAGTGTATATAGGTGAGAAAGGCCACTTAATTCAGACATGTTGTGGTTTCAAACATCGTGGCAAGAATCGGGTTCATGAATGGATAGTTGGTGGTTTGAAAGATGTGCTTGTTCCAGTAGAGGCATTTCACCTTAAGCACATGTTCCAGGATATTATAAAACACCATCAGAGGTTTGACTTTGAACGTGTTCCCGCAGTTGTGGAGCTATGCTGGCAAGCAGGTGCAAATGATGGAAATCATTTAAATTGGAACTCAGGAAGTGATTGCCTTGGTGTTGATGGAGTTGAGTCTTTGTCACCCGATGAGCTGATTCTGGTTGCCAGTGGAACTTTGAGGGCATGGGAAATGTTTAGAGATGGTGTGGAAAAGTTACTGATGGTTTATCGAGCAGAAGTCTGTAAACATTGTTCAGAAGTTCATATTGGGCCATCTGGCCATAAAGCTCGACTTTGTGGAGTGTTTAAGTATGAAAGTTGGCAGGGAACCCATTTTTGGAGAAAGGCAAATATGGATGATCTTGTGCCTCCAAAGACTGTATGGCGGTGGAGGCCTCAAGATCCTCAAGTACTTTTGAATGAAGGGAGGGGATTTTATGGGCATACTGCGGCAGTGGTAGAACTATGCACACAGGCAGGTGCCATTGCACCGCCAAAGTATCACTGTATGATGAAACTGCAGGGTGTAAGTACCACACTTGGAGATCAAAGATTGTTCCACCCAAATGCTCAAATGTATATGTCGGTTGATTCCAAGGTAATTGAACCCAGCAGAAGCTCCCCAGGGCTGCCAGATCACAGATGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

358

Amino Acids

40.51

Weight (kDa)

9.02

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	27 - 164	4.2e-40	APO RNA-binding
APO_RNA-bind	PF05634	190 - 311	2.5e-19	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AarI	CACCTGC	2 cut(s)	476, 890
Acc36I	ACCTGC	2 cut(s)	476, 890
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	2 cut(s)	163, 902
AciI	CCGC	4 cut(s)	459, 808, 872, 914
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	2 cut(s)	171, 700
AfaI	GTAC	4 cut(s)	56, 165, 834, 955
AfiI	CCNNNNNNNGG	2 cut(s)	133, 759
AflII	CTTAAG	2 cut(s)	91, 398
AflIII	ACRYGT	3 cut(s)	302, 405, 451
AgsI	TTSAA	6 cut(s)	40, 316, 364, 449, 841, 1028
AjnI	CCWGG	2 cut(s)	411, 1045
AjuI	GAANNNNNNNTTGG	6 cut(s)	336, 368, 672, 704, 742, 774
AleI	CACNNNNGTG	1 cut(s)	1065
AluBI	AGCT	7 cut(s)	60, 78, 100, 472, 574, 710, 1041
AluI	AGCT	7 cut(s)	60, 78, 100, 472, 574, 710, 1041
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	818
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	6 cut(s)	171, 246, 286, 692, 700, 815
ApeKI	GCWGC	1 cut(s)	1051
Asp700I	GAANNNNTTC	1 cut(s)	453
Asp718I	GGTACC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	181, 692
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	290, 386, 555
AvaII	GGWCC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	702
BanI	GGYRCC	2 cut(s)	163, 902
BbvI	GCAGC	1 cut(s)	1038
BccI	CCATC	7 cut(s)	79, 438, 491, 539, 617, 637, 703
BciT130I	CCWGG	2 cut(s)	413, 1047
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	941
BfrI	CTTAAG	2 cut(s)	91, 398
BfuAI	ACCTGC	2 cut(s)	476, 890
BisI	GCNGC	2 cut(s)	873, 1052
BlsI	GCNGC	2 cut(s)	874, 1053
BmcAI	AGTACT	1 cut(s)	834
Bme1390I	CCNGG	3 cut(s)	193, 413, 1047
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	181, 692
BmiI	GGNNCC	3 cut(s)	165, 751, 904
BmrFI	CCNGG	3 cut(s)	193, 413, 1047
BmrI	ACTGGG	2 cut(s)	142, 143
BmuI	ACTGGG	2 cut(s)	142, 143
BpuEI	CTTGAG	2 cut(s)	804, 813
BpuMI	CCSGG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	6 cut(s)	159, 174, 535, 1017, 1045, 1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 759
Bse1I	ACTGG	5 cut(s)	137, 149, 167, 380, 588
Bse3DI	GCAATG	1 cut(s)	906
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	413, 1047
BseDI	CCNNGG	6 cut(s)	159, 174, 535, 1017, 1045, 1046
BseGI	GGATG	1 cut(s)	784
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	133, 759
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	5 cut(s)	137, 149, 167, 380, 588
BseRI	GAGGAG	2 cut(s)	191, 215
BseXI	GCAGC	1 cut(s)	1038
BseYI	CCCAGC	1 cut(s)	1031
BshFI	GGCC	6 cut(s)	173, 248, 288, 694, 702, 817
BshNI	GGYRCC	2 cut(s)	163, 902
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	133, 759
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	6 cut(s)	173, 248, 288, 694, 702, 817
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	781, 823, 967, 1057
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	4 cut(s)	459, 808, 872, 914
BspANI	GGCC	6 cut(s)	173, 248, 288, 694, 702, 817
BspCNI	CTCAG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	165, 751, 904
BspMAI	CTGCAG	1 cut(s)	945
BspMI	ACCTGC	2 cut(s)	476, 890
BspPI	GGATC	1 cut(s)	818
BspT107I	GGYRCC	2 cut(s)	163, 902
BspTI	CTTAAG	2 cut(s)	91, 398
BsrDI	GCAATG	1 cut(s)	906
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	5 cut(s)	137, 149, 167, 380, 588
BssECI	CCNNGG	6 cut(s)	159, 174, 535, 1017, 1045, 1046
BssMI	GATC	4 cut(s)	781, 823, 967, 1057
BssT1I	CCWWGG	3 cut(s)	159, 535, 1017
Bst2UI	CCWGG	2 cut(s)	413, 1047
Bst4CI	ACNGT	3 cut(s)	241, 802, 929
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	2 cut(s)	91, 398
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	156, 250, 479, 483
BstDEI	CTNAG	2 cut(s)	8, 520
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	4 cut(s)	784, 826, 970, 1060
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	4 cut(s)	781, 823, 967, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 478, 814
BstNI	CCWGG	2 cut(s)	413, 1047
BstNSI	RCATGY	2 cut(s)	306, 409
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	191, 411, 1045
BstSFI	CTRYAG	1 cut(s)	941
BstV1I	GCAGC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	6 cut(s)	173, 248, 288, 694, 702, 817
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	784
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	6 cut(s)	5, 156, 174, 595, 882, 925
BveI	ACCTGC	2 cut(s)	476, 890
Cac8I	GCNNGC	4 cut(s)	156, 250, 479, 483
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	181, 692
Csp6I	GTAC	4 cut(s)	55, 164, 833, 954
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	5 cut(s)	160, 303, 341, 406, 606
CviQI	GTAC	4 cut(s)	55, 164, 833, 954
DdeI	CTNAG	2 cut(s)	8, 520
DpnI	GATC	4 cut(s)	783, 825, 969, 1059
DpnII	GATC	4 cut(s)	781, 823, 967, 1057
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	171, 700
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	3 cut(s)	159, 535, 1017
Eco147I	AGGCCT	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	411, 1045
EcoT14I	CCWWGG	3 cut(s)	159, 535, 1017
ErhI	CCWWGG	3 cut(s)	159, 535, 1017
FaeI	CATG	5 cut(s)	163, 306, 344, 409, 609
FalI	AAGNNNNNCTT	6 cut(s)	74, 106, 357, 389, 699, 731
FatI	CATG	5 cut(s)	159, 302, 340, 405, 605
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	873, 1052
FokI	GGATG	1 cut(s)	791
Fsp4HI	GCNGC	2 cut(s)	873, 1052
GluI	GCNGC	2 cut(s)	873, 1052
GsaI	CCCAGC	1 cut(s)	1035
HaeIII	GGCC	6 cut(s)	173, 248, 288, 694, 702, 817
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	5 cut(s)	163, 306, 344, 409, 609
HinfI	GANTC	7 cut(s)	112, 123, 188, 331, 554, 577, 1013
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	3 cut(s)	290, 386, 555
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	4 cut(s)	117, 300, 435, 679
Hpy188III	TCNNGA	4 cut(s)	263, 341, 522, 821
Hpy8I	GTNNAC	1 cut(s)	668
HpyAV	CCTTC	1 cut(s)	839
HpyCH4III	ACNGT	3 cut(s)	241, 802, 929
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	65, 208, 252, 491, 891, 911, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 478, 814
HpyF3I	CTNAG	2 cut(s)	8, 520
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	163, 306, 344, 409, 609
KpnI	GGTACC	1 cut(s)	167
Kzo9I	GATC	4 cut(s)	781, 823, 967, 1057
LmnI	GCTCC	2 cut(s)	469, 1046
Lsp1109I	GCAGC	1 cut(s)	1038
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	143, 561, 636
MalI	GATC	4 cut(s)	783, 825, 969, 1059
MboI	GATC	4 cut(s)	781, 823, 967, 1057
MboII	GAAGA	2 cut(s)	25, 130
MflI	RGATCY	1 cut(s)	823
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	6 cut(s)	17, 34, 48, 294, 511, 1023
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	563
Mox20I	TGGCCA	1 cut(s)	702
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	5 cut(s)	92, 293, 399, 509, 729
MslI	CAYNNNNRTG	2 cut(s)	987, 1065
Msp20I	TGGCCA	1 cut(s)	702
MspCI	CTTAAG	2 cut(s)	91, 398
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	193, 413, 1047
MvaI	CCWGG	2 cut(s)	413, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	205, 478, 814
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	781, 823, 967, 1057
NlaIII	CATG	5 cut(s)	163, 306, 344, 409, 609
NlaIV	GGNNCC	3 cut(s)	165, 751, 904
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	2 cut(s)	306, 409
OliI	CACNNNNGTG	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	340
PaqCI	CACCTGC	2 cut(s)	476, 890
PasI	CCCWGGG	1 cut(s)	1046
PceI	AGGCCT	1 cut(s)	817
PciI	ACATGT	2 cut(s)	302, 405
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	6 cut(s)	112, 123, 188, 331, 577, 1013
PfoI	TCCNGGA	2 cut(s)	191, 411
PkrI	GCNGC	2 cut(s)	874, 1053
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	2 cut(s)	302, 405
PsiI	TTATAA	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	411, 1045
PspEI	GGTNACC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	411, 1045
PspN4I	GGNNCC	3 cut(s)	165, 751, 904
PspPI	GGNCC	2 cut(s)	181, 692
PspPPI	RGGWCCY	1 cut(s)	181
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PstI	CTGCAG	1 cut(s)	945
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	4 cut(s)	56, 165, 834, 955
RsaNI	GTAC	4 cut(s)	55, 164, 833, 954
RseI	CAYNNNNRTG	2 cut(s)	987, 1065
SaqAI	TTAA	5 cut(s)	92, 293, 399, 509, 729
SatI	GCNGC	2 cut(s)	873, 1052
Sau3AI	GATC	4 cut(s)	781, 823, 967, 1057
Sau96I	GGNCC	2 cut(s)	181, 692
ScaI	AGTACT	1 cut(s)	834
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	3 cut(s)	193, 413, 1047
SfcI	CTRYAG	1 cut(s)	941
SinI	GGWCC	1 cut(s)	181
SmiI	ATTTAAAT	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	987, 1065
SmlI	CTYRAG	4 cut(s)	91, 398, 819, 828
SmoI	CTYRAG	4 cut(s)	91, 398, 819, 828
Sse9I	AATT	6 cut(s)	17, 34, 48, 294, 511, 1023
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	4 cut(s)	459, 808, 872, 914
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	191, 411, 1045
StyI	CCWWGG	3 cut(s)	159, 535, 1017
SwaI	ATTTAAAT	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	241, 802, 929
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	652, 712
TasI	AATT	6 cut(s)	17, 34, 48, 294, 511, 1023
TatI	WGTACW	2 cut(s)	54, 832
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	6 cut(s)	112, 123, 188, 331, 577, 1013
Tru1I	TTAA	5 cut(s)	92, 293, 399, 509, 729
Tru9I	TTAA	5 cut(s)	92, 293, 399, 509, 729
TscAI	CASTG	6 cut(s)	12, 156, 174, 595, 882, 932
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	1 cut(s)	1051
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	6 cut(s)	329, 357, 674, 750, 858, 950
TspRI	CASTG	6 cut(s)	12, 156, 174, 595, 882, 932
Vha464I	CTTAAG	2 cut(s)	91, 398
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	2 cut(s)	306, 409
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 801
XmnI	GAANNNNTTC	1 cut(s)	453
ZrmI	AGTACT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.