Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

5455333 .. 5462467

Gene Structure 7135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCTGCAATTTACGACAAAGAAGGAGAAGCAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGGAGAGCATCAAGAAAAATTTCGATAGCGCCCTCGGGTTTGAAGAAAGGAGAAGCTTGAATCTGCCAATCAAGGTTTTGATTTGGGGACCGAGTTTTTTCGTCTCTCTTTTCCCCCTTCTGCCTCCTAAACTGAACAACAGTAGTTGCATCAGTTTCATCCTTTTGTTCTACTTCTTGTTCATCCCCAAAGCCATCGTTCTTCCTCCTGAGCTTTTGTTCTTCCGACTGTTATACATAGACTGCTTTCGCTATTCAGGCATACCAATAAGCTATGGCGCTGAGGAGAAAATTGGGGGAGAGTTCGAATTTCAGTTGCAAAATGATGTTGAGTTTTTCGAGAGCATGATACCAGTGGCCGAGGAGGTCCTTAATTCCCGGAGGCTTCTTATTCAAGGCGTCTCTACCCTCCTCAAAGTGATCCCAGTTGTGGCTTGCAAATTCTGTCCAGAAGTACACATTAGCGATAAAGGTCACTTAATTCAGACTTGTTGTGGTTTCAAACGTCGTGGCAGAAATCGGGTTCATGAGTGGATAACTAGTAGTTTGAAAGATGTACTTGTTCCAGTAGAGGCATTTCACTTGAAGCACATGTTCCAGGGTGTTATCAAACATAACCAAAGGTTTGATTATGACCGTGTTCCTGCAGTTGTTGAGTTATGCTGGCAAGCAGGGGCAAATGATGAGAATCTGTATTCTGGTACTTTGAACCTAGAAAGTGATTGTGTTGCTGTTGAAGGAGCTGAGTCATTGTCACCTGCTGAACTCACTCTGGTTGCCAATGGAACTTTGAGGGCCTGGGAAATACTTAGAAATGGCGTGAAGAAATTGTTGATGGTTTATCCAGCAAAAGTGTGTAAAGACTGTTCAGAAGTCCATGTTGGGCCATCTGGGCATAAGGCGAGGCTTTGTGGACTTTTTAAGTATGAGCGTTGGCAAGGAACCCACTTTTGGAGAAAAGCATCTGTAAATGATCTTGTTCCTCCAAACATTGTATGGCGGAGGCGGCGTCAAGATCCTCCTGTGCTTTTGAATGAAGGAAGGGGCTATTACGGGCATGCCCCAGCAGTAGTAGAACTATGCGCACAGTCAGGTGCTATTGTGCCTTCAAAGTATCGTTGTATGATGAAAGTGGAGGGTTTAACTTCAGTTGTAAATCAAGGTTTACCCCCTCCGCCATTTAACCTGACAGAACCATACAGGTTACTCCATCCGAAAGATCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

436

Amino Acids

49.17

Weight (kDa)

7.91

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	140 - 253	1.2e-40	APO RNA-binding
APO_RNA-bind	PF05634	281 - 395	3.4e-19	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	844
Acc16I	TGCGCA	1 cut(s)	1162
Acc36I	ACCTGC	1 cut(s)	844
AciI	CCGC	3 cut(s)	1078, 1084, 1253
AclWI	GGATC	2 cut(s)	493, 1088
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	4 cut(s)	40, 97, 386, 518
AcuI	CTGAAG	1 cut(s)	1209
AcyI	GRCGYC	2 cut(s)	477, 1087
AfaI	GTAC	3 cut(s)	534, 636, 781
AfiI	CCNNNNNNNGG	2 cut(s)	508, 1029
AflIII	ACRYGT	1 cut(s)	669
AgeI	ACCGGT	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	2 cut(s)	675, 875
AjuI	GAANNNNNNNTTGG	4 cut(s)	942, 974, 1012, 1044
AluBI	AGCT	4 cut(s)	135, 292, 351, 821
AluI	AGCT	4 cut(s)	135, 292, 351, 821
Alw26I	GTCTC	2 cut(s)	187, 484
AlwI	GGATC	2 cut(s)	493, 1088
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	435, 873, 962
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	4 cut(s)	40, 97, 386, 518
AsiGI	ACCGGT	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	3 cut(s)	110, 359, 1163
AspS9I	GGNCC	4 cut(s)	167, 445, 873, 962
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	825
AsuII	TTCGAA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	167, 445
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	4 cut(s)	281, 907, 973, 1296
BciT130I	CCWGG	2 cut(s)	677, 877
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	187, 484
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	2 cut(s)	618, 791
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	2 cut(s)	111, 360
BfuAI	ACCTGC	1 cut(s)	844
BglI	GCCNNNNNGGC	1 cut(s)	970
BisI	GCNGC	2 cut(s)	6, 1085
BlsI	GCNGC	2 cut(s)	7, 1086
Bme1390I	CCNGG	3 cut(s)	457, 677, 877
Bme18I	GGWCC	2 cut(s)	167, 445
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	4 cut(s)	167, 445, 873, 962
BmiI	GGNNCC	2 cut(s)	168, 1021
BmrFI	CCNGG	3 cut(s)	457, 677, 877
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	4 cut(s)	57, 96, 237, 1049
BmuI	ACTGGG	1 cut(s)	497
Bpu10I	CCTNAGC	2 cut(s)	288, 360
Bpu14I	TTCGAA	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	2 cut(s)	477, 1087
BsaJI	CCNNGG	4 cut(s)	112, 438, 676, 876
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 1029
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	431, 503, 644
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	677, 877
BseDI	CCNNGG	4 cut(s)	112, 438, 676, 876
BseGI	GGATG	3 cut(s)	237, 261, 1288
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	508, 1029
BseMII	CTCAG	4 cut(s)	92, 279, 351, 813
BseNI	ACTGG	3 cut(s)	431, 503, 644
BseRI	GAGGAG	3 cut(s)	377, 455, 479
BseYI	CCCAGC	1 cut(s)	1141
BshFI	GGCC	3 cut(s)	437, 875, 964
BshTI	ACCGGT	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	66, 457
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	508, 1029
BsmAI	GTCTC	2 cut(s)	187, 484
BsmBI	CGTCTC	2 cut(s)	187, 484
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	437, 875, 964
BsoBI	CYCGRG	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	498, 1051, 1093, 1297
BspACI	CCGC	3 cut(s)	1078, 1084, 1253
BspANI	GGCC	3 cut(s)	437, 875, 964
BspCNI	CTCAG	4 cut(s)	91, 280, 352, 814
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	168, 1021
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	2 cut(s)	493, 1088
BspT104I	TTCGAA	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	431, 503, 644
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	112, 438, 676, 876
BssMI	GATC	4 cut(s)	498, 1051, 1093, 1297
BssNI	GRCGYC	2 cut(s)	477, 1087
Bst2UI	CCWGG	2 cut(s)	677, 877
Bst4CI	ACNGT	5 cut(s)	221, 309, 716, 944, 1167
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	2 cut(s)	477, 1087
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	514, 743, 747, 1137
BstDEI	CTNAG	5 cut(s)	78, 288, 360, 822, 887
BstF5I	GGATG	3 cut(s)	237, 261, 1288
BstH2I	RGCGCY	2 cut(s)	111, 360
BstHHI	GCGC	3 cut(s)	110, 359, 1163
BstKTI	GATC	4 cut(s)	501, 1054, 1096, 1300
BstMAI	GTCTC	2 cut(s)	187, 484
BstMBI	GATC	4 cut(s)	498, 1051, 1093, 1297
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 970, 1084
BstNI	CCWGG	2 cut(s)	677, 877
BstNSI	RCATGY	2 cut(s)	673, 1139
BstSCI	CCNGG	3 cut(s)	455, 675, 875
BstSFI	CTRYAG	1 cut(s)	723
BstX2I	RGATCY	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	1093
BsuRI	GGCC	3 cut(s)	437, 875, 964
BtsCI	GGATG	3 cut(s)	237, 261, 1288
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	4 cut(s)	514, 743, 747, 1137
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	3 cut(s)	110, 359, 1163
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	4 cut(s)	167, 445, 873, 962
CseI	GACGC	2 cut(s)	466, 1076
Csp6I	GTAC	3 cut(s)	533, 635, 780
CspAI	ACCGGT	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	6 cut(s)	424, 605, 670, 956, 1136, 1301
CviQI	GTAC	3 cut(s)	533, 635, 780
DdeI	CTNAG	5 cut(s)	78, 288, 360, 822, 887
DpnI	GATC	4 cut(s)	500, 1053, 1095, 1299
DpnII	GATC	4 cut(s)	498, 1051, 1093, 1297
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	1093, 1242
Eco47I	GGWCC	2 cut(s)	167, 445
Eco57I	CTGAAG	1 cut(s)	1209
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	445, 873
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	675, 875
Esp3I	CGTCTC	2 cut(s)	187, 484
FaeI	CATG	6 cut(s)	427, 608, 673, 959, 1139, 1304
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	6 cut(s)	423, 604, 669, 955, 1135, 1300
Fnu4HI	GCNGC	2 cut(s)	6, 1085
FokI	GGATG	3 cut(s)	224, 248, 1275
Fsp4HI	GCNGC	2 cut(s)	6, 1085
FspAI	RTGCGCAY	1 cut(s)	1162
FspBI	CTAG	2 cut(s)	618, 791
FspI	TGCGCA	1 cut(s)	1162
GlaI	GCGC	3 cut(s)	109, 358, 1162
GluI	GCNGC	2 cut(s)	6, 1085
GsaI	CCCAGC	1 cut(s)	1145
HaeII	RGCGCY	2 cut(s)	111, 360
HaeIII	GGCC	3 cut(s)	437, 875, 964
HapII	CCGG	2 cut(s)	66, 457
HgaI	GACGC	2 cut(s)	466, 1076
HhaI	GCGC	3 cut(s)	110, 359, 1163
Hin1I	GRCGYC	2 cut(s)	477, 1087
Hin1II	CATG	6 cut(s)	427, 608, 673, 959, 1139, 1304
Hin6I	GCGC	3 cut(s)	108, 357, 1161
HinP1I	GCGC	3 cut(s)	108, 357, 1161
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	3 cut(s)	139, 766, 824
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	66, 457
HphI	GGTGA	1 cut(s)	825
Hpy166II	GTNNAC	4 cut(s)	55, 535, 992, 1244
Hpy188I	TCNGA	4 cut(s)	305, 564, 949, 1293
Hpy188III	TCNNGA	7 cut(s)	80, 91, 287, 418, 527, 605, 1091
Hpy8I	GTNNAC	4 cut(s)	55, 535, 992, 1244
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	6 cut(s)	17, 206, 809, 1109, 1113, 1194
HpyCH4III	ACNGT	5 cut(s)	221, 309, 716, 944, 1167
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	8, 228, 397, 516, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 970, 1084
HpyF3I	CTNAG	5 cut(s)	78, 288, 360, 822, 887
HpySE526I	ACGT	1 cut(s)	583
Hsp92I	GRCGYC	2 cut(s)	477, 1087
Hsp92II	CATG	6 cut(s)	427, 608, 673, 959, 1139, 1304
HspAI	GCGC	3 cut(s)	108, 357, 1161
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	498, 1051, 1093, 1297
LmnI	GCTCC	1 cut(s)	818
LweI	GCATC	4 cut(s)	57, 96, 237, 1049
MaeI	CTAG	2 cut(s)	618, 791
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	3 cut(s)	551, 831, 1281
MalI	GATC	4 cut(s)	500, 1053, 1095, 1299
MboI	GATC	4 cut(s)	498, 1051, 1093, 1297
MboII	GAAGA	5 cut(s)	47, 134, 272, 292, 913
MflI	RGATCY	1 cut(s)	1093
MluCI	AATT	9 cut(s)	9, 40, 97, 369, 386, 451, 518, 558, 905
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	7 cut(s)	54, 450, 557, 999, 1220, 1260, 1306
MspI	CCGG	2 cut(s)	66, 457
MspR9I	CCNGG	3 cut(s)	457, 677, 877
MvaI	CCWGG	2 cut(s)	677, 877
MwoI	GCNNNNNNNGC	3 cut(s)	336, 970, 1084
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	4 cut(s)	498, 1051, 1093, 1297
NlaIII	CATG	6 cut(s)	427, 608, 673, 959, 1139, 1304
NlaIV	GGNNCC	2 cut(s)	168, 1021
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	551, 831
NsbI	TGCGCA	1 cut(s)	1162
NspI	RCATGY	2 cut(s)	673, 1139
NspV	TTCGAA	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	1139
PagI	TCATGA	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	844
PciI	ACATGT	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	139, 766
PfoI	TCCNGGA	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	7, 1086
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PpuMI	RGGWCCY	1 cut(s)	445
PscI	ACATGT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	675, 875
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	2 cut(s)	675, 875
PspN4I	GGNNCC	2 cut(s)	168, 1021
PspPI	GGNCC	4 cut(s)	167, 445, 873, 962
PspPPI	RGGWCCY	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	928, 960
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	1093
RsaI	GTAC	3 cut(s)	534, 636, 781
RsaNI	GTAC	3 cut(s)	533, 635, 780
SaqAI	TTAA	7 cut(s)	54, 450, 557, 999, 1220, 1260, 1306
SatI	GCNGC	2 cut(s)	6, 1085
Sau3AI	GATC	4 cut(s)	498, 1051, 1093, 1297
Sau96I	GGNCC	4 cut(s)	167, 445, 873, 962
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	3 cut(s)	457, 677, 877
SfaNI	GCATC	4 cut(s)	57, 96, 237, 1049
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	2 cut(s)	167, 445
SpeI	ACTAGT	1 cut(s)	617
SphI	GCATGC	1 cut(s)	1139
Sse9I	AATT	9 cut(s)	9, 40, 97, 369, 386, 451, 518, 558, 905
SsiI	CCGC	3 cut(s)	1078, 1084, 1253
SspMI	CTAG	2 cut(s)	618, 791
StyD4I	CCNGG	3 cut(s)	455, 675, 875
TaaI	ACNGT	5 cut(s)	221, 309, 716, 944, 1167
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	102, 384, 417
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	9 cut(s)	9, 40, 97, 369, 386, 451, 518, 558, 905
TatI	WGTACW	2 cut(s)	532, 634
TauI	GCSGC	1 cut(s)	1087
TfiI	GAWTC	2 cut(s)	139, 766
Tru1I	TTAA	7 cut(s)	54, 450, 557, 999, 1220, 1260, 1306
Tru9I	TTAA	7 cut(s)	54, 450, 557, 999, 1220, 1260, 1306
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	2 cut(s)	551, 831
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	551, 831
TspDTI	ATGAA	5 cut(s)	226, 250, 593, 1128, 1220
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	167, 445
XapI	RAATTY	4 cut(s)	40, 97, 386, 518
XceI	RCATGY	2 cut(s)	673, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	618, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.