Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

33633551 .. 33636193

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43470.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGGTGAGGAGAAAATTGGGGGAGAGTTTGAATATCAATTGCAAAATGATGTCGAGATTTTCAAGATATTACAGCTCAAAAAAGGTGGACTTGAAGAAGATGAGGCCTATGATTCTGAAGAGAATCCAAGATCGAGCAAAGGACTATCCGGTGCACAGGATGATACCAGTGGCTGAGGAAGTCCTGAATTCCCGGAGGCTTCTTATCCAAGGTGTGTCTACCCTCCTCAAAGCGGTCCCAGTTGTGGCCTGCAAGTTCTGTCCAGAAGTATACATTGGCGATAAAGGGCACTTAATTCAGACTTGTCCTGGTTTCAAACGTCGTGGCAGAAATCGGGTTCATGAGTGGATAACTGGTAGTATGAAAGATGTACTTGTTCCAGTAGAGGCATTTCACTTGAAGCACATGTTCCAGGATGTAATCAAACATAACCAAAGGTTTGATTATGACCGAGTTTCTGCAGTTGTTGAGCTGTGCTGGCAAGCAGGGGCAAATGATGAAAATCTGTATTCTGGTACTTGGGACCCAGAAAATGATTGTGTTGCTCTTGATGGAGCTGAGTCCTTGTCACCTGCTGAACTCACTCTGGTTGCCAATGGAACTTTGAGGGCCTGGGAAGTACTTAGAAATGGTGTGAAGAAATTGTTGATGGTTTATCCAGCAAAAGTGTGTAAAGACTGTTCAGAAGTCCATGTTGGGCCATCTGGGCATAAGGCGAGGCTGTGTGGACTTTTTAAGTATGAGCGTTGGCAAGGAACCCACTTTTGGAGAAAACCTTCTGTAGATGATCTTGTTCCTCCAAACATCGTATGGCGGAAGCGGCATCAAGATCCTCCTGTGCTTTTGAATGAAGGAAAGGGCTATTACGGGCATGCTCCAGCAGTAGTAGAACTATGCTCACAGGCAGGTGCCGTTGTGCCTACAAAGTATCATTGTATGATGAAAATGGATGGTTTAACTGGAAATGTAAATCAAGGTTTACCTCCTCCGCCATTTAACCAGACAGAACCATACAGGGTGCTCCATCTGAAAAATCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

349

Amino Acids

39.62

Weight (kDa)

9.41

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	29 - 166	1.9e-41	APO RNA-binding
APO_RNA-bind	PF05634	194 - 308	1.7e-18	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	583, 899
Acc36I	ACCTGC	2 cut(s)	583, 899
AccB1I	GGYRCC	1 cut(s)	911
AccI	GTMKAC	2 cut(s)	221, 273
AciI	CCGC	5 cut(s)	5, 236, 817, 823, 992
AclWI	GGATC	1 cut(s)	827
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	375, 520, 624
AfiI	CCNNNNNNNGG	3 cut(s)	235, 247, 768
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	6 cut(s)	34, 66, 97, 319, 403, 850
AjnI	CCWGG	3 cut(s)	310, 414, 614
AjuI	GAANNNNNNNTTGG	6 cut(s)	261, 293, 681, 713, 751, 783
AluBI	AGCT	3 cut(s)	78, 475, 560
AluI	AGCT	3 cut(s)	78, 475, 560
Alw21I	GWGCWC	2 cut(s)	159, 1026
Alw44I	GTGCAC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	827
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	107, 249, 612, 701
ApaLI	GTGCAC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	778
AspS9I	GGNCC	4 cut(s)	238, 526, 612, 701
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	19, 564
AvaII	GGWCC	2 cut(s)	238, 526
BaeGI	GKGCMC	2 cut(s)	159, 294
BanI	GGYRCC	1 cut(s)	911
Bbv12I	GWGCWC	2 cut(s)	159, 1026
BbvCI	CCTCAGC	1 cut(s)	177
BccI	CCATC	5 cut(s)	548, 646, 712, 947, 1035
BceAI	ACGGC	1 cut(s)	899
BciT130I	CCWGG	3 cut(s)	312, 416, 616
BcnI	CCSGG	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	462, 783
BfuAI	ACCTGC	2 cut(s)	583, 899
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	1 cut(s)	824
BlsI	GCNGC	1 cut(s)	825
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	4 cut(s)	196, 312, 416, 616
Bme18I	GGWCC	2 cut(s)	238, 526
BmgT120I	GGNCC	4 cut(s)	238, 526, 612, 701
BmiI	GGNNCC	5 cut(s)	240, 527, 528, 760, 913
BmrFI	CCNGG	4 cut(s)	196, 312, 416, 616
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	211, 615
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 247, 768
Bse1I	ACTGG	5 cut(s)	170, 242, 361, 383, 967
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	312, 416, 616
BseDI	CCNNGG	2 cut(s)	211, 615
BseGI	GGATG	3 cut(s)	168, 424, 958
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	235, 247, 768
BseMII	CTCAG	2 cut(s)	168, 552
BseNI	ACTGG	5 cut(s)	170, 242, 361, 383, 967
BseRI	GAGGAG	3 cut(s)	25, 218, 978
BseSI	GKGCMC	2 cut(s)	159, 294
BshFI	GGCC	4 cut(s)	109, 251, 614, 703
BshNI	GGYRCC	1 cut(s)	911
BsiHKAI	GWGCWC	2 cut(s)	159, 1026
BsiSI	CCGG	2 cut(s)	152, 196
BslFI	GGGAC	2 cut(s)	224, 539
BslI	CCNNNNNNNGG	3 cut(s)	235, 247, 768
BsmFI	GGGAC	2 cut(s)	224, 539
BsnI	GGCC	4 cut(s)	109, 251, 614, 703
Bsp1286I	GDGCHC	3 cut(s)	159, 294, 1026
Bsp143I	GATC	3 cut(s)	133, 790, 832
BspACI	CCGC	5 cut(s)	5, 236, 817, 823, 992
BspANI	GGCC	4 cut(s)	109, 251, 614, 703
BspCNI	CTCAG	2 cut(s)	169, 553
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	5 cut(s)	240, 527, 528, 760, 913
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	2 cut(s)	583, 899
BspPI	GGATC	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	911
BsrI	ACTGG	5 cut(s)	170, 242, 361, 383, 967
BssECI	CCNNGG	2 cut(s)	211, 615
BssMI	GATC	3 cut(s)	133, 790, 832
BssNAI	GTATAC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	312, 416, 616
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	4 cut(s)	253, 482, 486, 876
BstDEI	CTNAG	3 cut(s)	177, 561, 626
BstF5I	GGATG	3 cut(s)	168, 424, 958
BstKTI	GATC	3 cut(s)	136, 793, 835
BstMBI	GATC	3 cut(s)	133, 790, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	481, 709, 823
BstNI	CCWGG	3 cut(s)	312, 416, 616
BstNSI	RCATGY	2 cut(s)	412, 878
BstSCI	CCNGG	4 cut(s)	194, 310, 414, 614
BstSFI	CTRYAG	2 cut(s)	462, 783
BstSLI	GKGCMC	2 cut(s)	159, 294
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BstZ17I	GTATAC	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	109, 251, 614, 703
BtsCI	GGATG	3 cut(s)	168, 424, 958
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	2 cut(s)	583, 899
Cac8I	GCNNGC	4 cut(s)	253, 482, 486, 876
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	4 cut(s)	238, 526, 612, 701
Csp6I	GTAC	3 cut(s)	374, 519, 623
CspCI	CAANNNNNGTGG	4 cut(s)	69, 104, 307, 342
CviAII	CATG	5 cut(s)	344, 409, 695, 875, 1040
CviQI	GTAC	3 cut(s)	374, 519, 623
DdeI	CTNAG	3 cut(s)	177, 561, 626
DpnI	GATC	3 cut(s)	135, 792, 834
DpnII	GATC	3 cut(s)	133, 790, 832
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	2 cut(s)	832, 981
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	238, 526
Eco57I	CTGAAG	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	526, 612
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	310, 414, 614
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	5 cut(s)	347, 412, 698, 878, 1043
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 360, 392
FaqI	GGGAC	2 cut(s)	224, 539
FatI	CATG	5 cut(s)	343, 408, 694, 874, 1039
FblI	GTMKAC	2 cut(s)	221, 273
Fnu4HI	GCNGC	1 cut(s)	824
FokI	GGATG	3 cut(s)	175, 431, 965
Fsp4HI	GCNGC	1 cut(s)	824
GluI	GCNGC	1 cut(s)	824
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	4 cut(s)	109, 251, 614, 703
HapII	CCGG	2 cut(s)	152, 196
Hin1II	CATG	5 cut(s)	347, 412, 698, 878, 1043
HinfI	GANTC	3 cut(s)	115, 126, 563
HpaII	CCGG	2 cut(s)	152, 196
HphI	GGTGA	2 cut(s)	19, 564
Hpy166II	GTNNAC	6 cut(s)	91, 157, 222, 274, 731, 983
Hpy188I	TCNGA	4 cut(s)	120, 303, 688, 1032
Hpy188III	TCNNGA	7 cut(s)	57, 66, 187, 266, 344, 551, 830
Hpy8I	GTNNAC	6 cut(s)	91, 157, 222, 274, 731, 983
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	789, 848
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	45, 157, 255, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	481, 709, 823
HpyF3I	CTNAG	3 cut(s)	177, 561, 626
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	5 cut(s)	347, 412, 698, 878, 1043
KflI	GGGWCCC	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	133, 790, 832
LmnI	GCTCC	3 cut(s)	557, 883, 1029
LweI	GCATC	1 cut(s)	835
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	570
MalI	GATC	3 cut(s)	135, 792, 834
MboI	GATC	3 cut(s)	133, 790, 832
MboII	GAAGA	4 cut(s)	109, 112, 133, 652
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	3 cut(s)	159, 294, 1026
MluCI	AATT	5 cut(s)	17, 40, 190, 297, 644
MlyI	GAGTC	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	778
MseI	TTAA	5 cut(s)	296, 738, 959, 999, 1045
MspI	CCGG	2 cut(s)	152, 196
MspR9I	CCNGG	4 cut(s)	196, 312, 416, 616
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	3 cut(s)	312, 416, 616
MwoI	GCNNNNNNNGC	3 cut(s)	481, 709, 823
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	133, 790, 832
NlaIII	CATG	5 cut(s)	347, 412, 698, 878, 1043
NlaIV	GGNNCC	5 cut(s)	240, 527, 528, 760, 913
NmuCI	GTSAC	1 cut(s)	570
NspI	RCATGY	2 cut(s)	412, 878
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	1 cut(s)	343
PaqCI	CACCTGC	2 cut(s)	583, 899
PceI	AGGCCT	1 cut(s)	109
PciI	ACATGT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	778
PfeI	GAWTC	2 cut(s)	115, 126
PfoI	TCCNGGA	2 cut(s)	194, 414
PkrI	GCNGC	1 cut(s)	825
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	3 cut(s)	310, 414, 614
PspGI	CCWGG	3 cut(s)	310, 414, 614
PspN4I	GGNNCC	5 cut(s)	240, 527, 528, 760, 913
PspPI	GGNCC	4 cut(s)	238, 526, 612, 701
PspPPI	RGGWCCY	1 cut(s)	526
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	3 cut(s)	375, 520, 624
RsaNI	GTAC	3 cut(s)	374, 519, 623
SaqAI	TTAA	5 cut(s)	296, 738, 959, 999, 1045
SatI	GCNGC	1 cut(s)	824
Sau3AI	GATC	3 cut(s)	133, 790, 832
Sau96I	GGNCC	4 cut(s)	238, 526, 612, 701
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	196, 312, 416, 616
SduI	GDGCHC	3 cut(s)	159, 294, 1026
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	2 cut(s)	462, 783
SinI	GGWCC	2 cut(s)	238, 526
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	5 cut(s)	17, 40, 190, 297, 644
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	5 cut(s)	5, 236, 817, 823, 992
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	4 cut(s)	194, 310, 414, 614
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	56, 136
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	5 cut(s)	17, 40, 190, 297, 644
TatI	WGTACW	2 cut(s)	373, 622
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	115, 126
Tru1I	TTAA	5 cut(s)	296, 738, 959, 999, 1045
Tru9I	TTAA	5 cut(s)	296, 738, 959, 999, 1045
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	5 cut(s)	332, 380, 516, 867, 959
TspRI	CASTG	1 cut(s)	177
VneI	GTGCAC	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	238, 526
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	2 cut(s)	412, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmiI	GTMKAC	2 cut(s)	221, 273
XmnI	GAANNNNTTC	1 cut(s)	778
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.