Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

5145259 .. 5146248

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCAAGGTGTCTCTACTCTCCTCAAAATGATACCAGTTTTGGCGTTGTTCTATCACATAGTTACTGATAGCTGTAAAGGCCACTTAATTCAGACTTCTTGTGGTTTCAAACATTGTGGCAAGAATCGGGTTCATGAATGGATAGTTGGTGGTTTGAAAGATGTGCTTGTTCCAGTAGAGGCATTTCACCTTAAGCACATGTTCCAGGATATTATAAAACACCATCAGAGGTTTGACTTTGAACGTGTTCCCGCAGTTGTGGAGCTATGCTGGCAAGCAGGTGCGAATGATGGAAATCATTTAAATTGGAACTCAGGAAGTGATTGCCTTGGTGTTGATGGAGCTGAGTCTTTGTCACCCGATGAGCTGATTCTGGTTGCCAGTGGAACTTTGAGGGCATGGGAAATATTTAGAGATGGTGTGGAAAAGTTACTGATGGTTTATCCAGCAAAAGTCTGTAAACATTGTTCAGAAGTTCATATTGGGCCATCTGGCCATAAGGCTCGACTTTGTGGAGTGTTTAAGTATGAAAGTTGGCAGGGAACCCATTTTTGGAGAAAGGCAAATATGGATGATCTTGTGCCTCCAAAGACTGTATGGCGGCGGCAGCCTCAAGATCCTCAAAGTACTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

213

Amino Acids

24.01

Weight (kDa)

7.2

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AciI	CCGC	3 cut(s)	252, 601, 604
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	493
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	552
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	2 cut(s)	198, 244
AgsI	TTSAA	4 cut(s)	109, 157, 242, 635
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	6 cut(s)	129, 161, 465, 497, 535, 567
AluBI	AGCT	4 cut(s)	72, 265, 344, 367
AluI	AGCT	4 cut(s)	72, 265, 344, 367
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	3 cut(s)	79, 485, 493
ApeKI	GCWGC	1 cut(s)	607
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	179, 348
BalI	TGGCCA	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	6 cut(s)	231, 284, 332, 410, 430, 496
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	602, 605, 608
BlsI	GCNGC	3 cut(s)	603, 606, 609
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	3 cut(s)	35, 173, 381
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	327, 336
BseNI	ACTGG	3 cut(s)	35, 173, 381
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	619
BshFI	GGCC	3 cut(s)	81, 487, 495
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	3 cut(s)	81, 487, 495
Bsp143I	GATC	2 cut(s)	574, 616
BspACI	CCGC	3 cut(s)	252, 601, 604
BspANI	GGCC	3 cut(s)	81, 487, 495
BspCNI	CTCAG	2 cut(s)	326, 337
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	611
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	35, 173, 381
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	574, 616
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	595
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	272, 276
BstDEI	CTNAG	2 cut(s)	313, 345
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	2 cut(s)	577, 619
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	574, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 271, 607
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	81, 487, 495
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	388
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	272, 276
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	627
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	3 cut(s)	134, 199, 399
CviJI	RGCY	9 cut(s)	72, 81, 265, 344, 367, 487, 495, 503, 610
CviKI_1	RGCY	9 cut(s)	72, 81, 265, 344, 367, 487, 495, 503, 610
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	313, 345
DpnI	GATC	2 cut(s)	576, 618
DpnII	GATC	2 cut(s)	574, 616
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	3 cut(s)	137, 202, 402
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	3 cut(s)	133, 198, 398
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	602, 605, 608
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	602, 605, 608
GluI	GCNGC	3 cut(s)	602, 605, 608
HaeIII	GGCC	3 cut(s)	81, 487, 495
Hin1II	CATG	3 cut(s)	137, 202, 402
HinfI	GANTC	3 cut(s)	124, 347, 370
HphI	GGTGA	2 cut(s)	179, 348
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	93, 228, 472
Hpy188III	TCNNGA	3 cut(s)	134, 315, 614
Hpy8I	GTNNAC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 271, 607
HpyF3I	CTNAG	2 cut(s)	313, 345
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	137, 202, 402
Kzo9I	GATC	2 cut(s)	574, 616
LmnI	GCTCC	2 cut(s)	262, 341
Lsp1109I	GCAGC	1 cut(s)	619
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	3 cut(s)	61, 354, 429
MalI	GATC	2 cut(s)	576, 618
MboI	GATC	2 cut(s)	574, 616
MflI	RGATCY	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	2 cut(s)	87, 304
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	32, 172, 222, 387, 594, 621, 630
Mox20I	TGGCCA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	4 cut(s)	86, 192, 302, 522
Msp20I	TGGCCA	1 cut(s)	495
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	78, 271, 607
NdeII	GATC	2 cut(s)	574, 616
NlaIII	CATG	3 cut(s)	137, 202, 402
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	269
PciI	ACATGT	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	124, 370
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	603, 606, 609
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	485
PsrI	GAACNNNNNNTAC	2 cut(s)	451, 483
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	86, 192, 302, 522
SatI	GCNGC	3 cut(s)	602, 605, 608
Sau3AI	GATC	2 cut(s)	574, 616
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	9 cut(s)	10, 74, 192, 233, 247, 267, 283, 346, 369
SmiI	ATTTAAAT	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	191, 612
SmoI	CTYRAG	2 cut(s)	191, 612
Sse9I	AATT	2 cut(s)	87, 304
SsiI	CCGC	3 cut(s)	252, 601, 604
SspI	AATATT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	328
SwaI	ATTTAAAT	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	87, 304
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	2 cut(s)	604, 607
TfiI	GAWTC	2 cut(s)	124, 370
Tru1I	TTAA	4 cut(s)	86, 192, 302, 522
Tru9I	TTAA	4 cut(s)	86, 192, 302, 522
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	4 cut(s)	122, 150, 467, 543
TspRI	CASTG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	191
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.