Rmu_sc0019386.1_g000001

APO protein 4

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019386.1
Physical Location & Seq
Reverse (-)
2723 .. 6813
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019386.1_g000001.1.cds

Sequence Viewer

Length: 1518 bp
atggcgctgaggagaaaattgggggagagttcgaatttcagttgcaaaatgatgttgagcttttcgaggtattacagctcaaacaaagtggacttaaagaagctgaggcctatgattctgaagagaatccaggaccgagctcaggactatccggtgcagagcatgataccagtggccgaggaggtccttaattcccggaggcttcttattcaaggcgtctctaccctcctcaaagtgatcccagttgtggcctgcaagttctgtccagaagtacacattagcgataaaggtcacttaattcagacttgttgtggtttcaaacgttgtggcagaaatcgggttcacgagtggataactggtagtttgaaagatgtacttgttccagtagaggcatttcacttgaagcacatgttccagggtgttatcaaacataaccaaaggtttgattatgaccgtgttcctgcagttgttgagctgtgctggcaagcaggggcaaatgataaaaatctgtattctggtacttggaacccagaaagtgattgtgttgctgttgaaggagctgagtcattgtcacctgctgaactcactctggttgccaatggaactttgagggcctgggaaatacttagaaatggcgtgaagaaattgttgatggtttatccagcaaaagtgtgtaaagactgttcagaagtccatgttgggccatctgggcataaggcgaggctttgtggactttttaagtatgagcgttggcaaggaacccacttttggagaaaagcatctgtaaatgatcttgttcctccaaacattgtatggcggaggcggcgtcaagatcctcctgtgcttttgaatgaaggaaggggctattacgggcatgctccagcagtagtagaactatgcgcgcaggcaggtgctattgtgccttcaaagtatcgttgtatgatgaaagtggagggtttaacttcagttgtaaatcaaggtttaccccctccgccatttaacctgacagaaccataccggttgatttgtttcttagctgattgttatgtaactgacttaaatacttttcgtgctagttgtggcattgttgatgtaatggaagatgttcatgatgatgtgggtggcgaacttcgtggtagagaattggctagcttggagtactatgtgaatagtgaagtagatgataccactgatgttcaagcaagtagaggagaagacttccaaggtattccttgggatagacttagcattactagagagaaataccagcaaactaggttagaaagatacaagaattatgagaacattcctaattccagagaagggtcagggaaggactgcaacattaaagaaaaaggatctttatattatgagtttcaatgcaacacaagatcagtgaaaccaactatccttcattttcagttgcgtaacttggtctgggctacatcaaagcataatgtctaccttatgtcacatttttctgtcattcatgtcttcattaagttgcgaagcatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

57.64

Weight (kDa)

8.97

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 583, 899
Acc36I ACCTGC 2 cut(s) 583, 899
AccI GTMKAC 1 cut(s) 1461
AccII CGCG 1 cut(s) 902
AciI CCGC 3 cut(s) 817, 823, 992
AclI AACGTT 1 cut(s) 322
AclWI GGATC 3 cut(s) 232, 827, 1366
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 140, 948
AcyI GRCGYC 2 cut(s) 216, 826
AfaI GTAC 4 cut(s) 273, 375, 520, 1160
AfiI CCNNNNNNNGG 4 cut(s) 142, 247, 768, 1323
AflIII ACRYGT 1 cut(s) 408
AgeI ACCGGT 1 cut(s) 1017
AgsI TTSAA 9 cut(s) 212, 319, 367, 403, 554, 850, 927, 1199, 1379
AjnI CCWGG 3 cut(s) 129, 414, 614
AjuI GAANNNNNNNTTGG 4 cut(s) 681, 713, 751, 783
AluBI AGCT 8 cut(s) 60, 78, 103, 140, 475, 560, 1037, 1152
AluI AGCT 8 cut(s) 60, 78, 103, 140, 475, 560, 1037, 1152
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 232, 827, 1366
AoxI GGCC 5 cut(s) 107, 174, 249, 612, 701
ApoI RAATTY 1 cut(s) 34
AsiGI ACCGGT 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 1104
AspLEI GCGC 3 cut(s) 7, 902, 904
AspS9I GGNCC 4 cut(s) 133, 184, 612, 701
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 564
AsuII TTCGAA 1 cut(s) 32
AsuNHI GCTAGC 1 cut(s) 1148
AvaII GGWCC 2 cut(s) 133, 184
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 2 cut(s) 1221, 1486
Bbv12I GWGCWC 1 cut(s) 142
BbvCI CCTCAGC 2 cut(s) 8, 104
BccI CCATC 2 cut(s) 646, 712
BciT130I CCWGG 3 cut(s) 131, 416, 616
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 4 cut(s) 1074, 1149, 1254, 1275
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 2 cut(s) 583, 899
BglI GCCNNNNNGGC 1 cut(s) 709
BisI GCNGC 1 cut(s) 824
BlsI GCNGC 1 cut(s) 825
BmcAI AGTACT 1 cut(s) 1160
Bme1390I CCNGG 4 cut(s) 131, 196, 416, 616
Bme18I GGWCC 2 cut(s) 133, 184
BmgT120I GGNCC 4 cut(s) 133, 184, 612, 701
BmiI GGNNCC 2 cut(s) 527, 760
BmrFI CCNGG 4 cut(s) 131, 196, 416, 616
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 788
BmtI GCTAGC 1 cut(s) 1152
BmuI ACTGGG 1 cut(s) 236
BpiI GAAGAC 2 cut(s) 1221, 1486
BpmI CTGGAG 1 cut(s) 864
Bpu10I CCTNAGC 3 cut(s) 8, 104, 141
Bpu14I TTCGAA 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 216, 826
BsaJI CCNNGG 5 cut(s) 177, 415, 615, 1222, 1232
BsaWI WCCGGW 2 cut(s) 151, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 247, 768, 1323
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 4 cut(s) 170, 242, 361, 383
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 3 cut(s) 131, 416, 616
BseDI CCNNGG 5 cut(s) 177, 415, 615, 1222, 1232
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 4 cut(s) 142, 247, 768, 1323
BseMII CTCAG 3 cut(s) 95, 155, 552
BseNI ACTGG 4 cut(s) 170, 242, 361, 383
BsePI GCGCGC 1 cut(s) 900
BseRI GAGGAG 4 cut(s) 25, 194, 218, 1224
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 902
BshFI GGCC 5 cut(s) 109, 176, 251, 614, 703
BshTI ACCGGT 1 cut(s) 1017
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 3 cut(s) 152, 196, 1018
BslI CCNNNNNNNGG 4 cut(s) 142, 247, 768, 1323
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsnI GGCC 5 cut(s) 109, 176, 251, 614, 703
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 5 cut(s) 237, 790, 832, 1358, 1391
BspACI CCGC 3 cut(s) 817, 823, 992
BspANI GGCC 5 cut(s) 109, 176, 251, 614, 703
BspCNI CTCAG 3 cut(s) 96, 154, 553
BspFNI CGCG 1 cut(s) 902
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 2 cut(s) 527, 760
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 2 cut(s) 583, 899
BspOI GCTAGC 1 cut(s) 1152
BspPI GGATC 3 cut(s) 232, 827, 1366
BspT104I TTCGAA 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 1017
BsrI ACTGG 4 cut(s) 170, 242, 361, 383
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 5 cut(s) 177, 415, 615, 1222, 1232
BssHII GCGCGC 1 cut(s) 900
BssMI GATC 5 cut(s) 237, 790, 832, 1358, 1391
BssNI GRCGYC 2 cut(s) 216, 826
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 1222, 1232
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 3 cut(s) 131, 416, 616
Bst4CI ACNGT 2 cut(s) 455, 683
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 2 cut(s) 216, 826
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 7 cut(s) 253, 482, 486, 876, 902, 906, 1150
BstDEI CTNAG 7 cut(s) 8, 104, 141, 561, 626, 1033, 1244
BstFNI CGCG 1 cut(s) 902
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 902, 904
BstKTI GATC 5 cut(s) 240, 793, 835, 1361, 1394
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 5 cut(s) 237, 790, 832, 1358, 1391
BstMWI GCNNNNNNNGC 3 cut(s) 481, 709, 823
BstNI CCWGG 3 cut(s) 131, 416, 616
BstNSI RCATGY 2 cut(s) 412, 878
BstSCI CCNGG 4 cut(s) 129, 194, 414, 614
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 902
BstV2I GAAGAC 2 cut(s) 1221, 1486
BstX2I RGATCY 2 cut(s) 832, 1358
BstYI RGATCY 2 cut(s) 832, 1358
BsuRI GGCC 5 cut(s) 109, 176, 251, 614, 703
BtsIMutI CAGTG 3 cut(s) 177, 1188, 1401
BveI ACCTGC 2 cut(s) 583, 899
Cac8I GCNNGC 7 cut(s) 253, 482, 486, 876, 902, 906, 1150
CciI TCATGA 1 cut(s) 1108
CfoI GCGC 3 cut(s) 7, 902, 904
Cfr10I RCCGGY 1 cut(s) 1017
Cfr13I GGNCC 4 cut(s) 133, 184, 612, 701
CseI GACGC 2 cut(s) 205, 815
Csp6I GTAC 4 cut(s) 272, 374, 519, 1159
CspAI ACCGGT 1 cut(s) 1017
CspCI CAANNNNNGTGG 4 cut(s) 69, 104, 307, 342
CviAII CATG 6 cut(s) 163, 409, 695, 875, 1109, 1490
CviQI GTAC 4 cut(s) 272, 374, 519, 1159
DdeI CTNAG 7 cut(s) 8, 104, 141, 561, 626, 1033, 1244
DpnI GATC 5 cut(s) 239, 792, 834, 1360, 1393
DpnII GATC 5 cut(s) 237, 790, 832, 1358, 1391
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 2 cut(s) 832, 981
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 1222, 1232
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 133, 184
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 140, 948
EcoICRI GAGCTC 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 184, 612
EcoRII CCWGG 3 cut(s) 129, 414, 614
EcoT14I CCWWGG 2 cut(s) 1222, 1232
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 1222, 1232
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 6 cut(s) 166, 412, 698, 878, 1112, 1493
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 6 cut(s) 162, 408, 694, 874, 1108, 1489
FblI GTMKAC 1 cut(s) 1461
Fnu4HI GCNGC 1 cut(s) 824
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 824
FspBI CTAG 4 cut(s) 1074, 1149, 1254, 1275
GlaI GCGC 3 cut(s) 6, 901, 903
GluI GCNGC 1 cut(s) 824
GsuI CTGGAG 1 cut(s) 864
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 109, 176, 251, 614, 703
HapII CCGG 3 cut(s) 152, 196, 1018
HgaI GACGC 2 cut(s) 205, 815
HhaI GCGC 3 cut(s) 7, 902, 904
Hin1I GRCGYC 2 cut(s) 216, 826
Hin1II CATG 6 cut(s) 166, 412, 698, 878, 1112, 1493
Hin6I GCGC 3 cut(s) 5, 900, 902
HinP1I GCGC 3 cut(s) 5, 900, 902
HinfI GANTC 3 cut(s) 115, 126, 563
HpaII CCGG 3 cut(s) 152, 196, 1018
HphI GGTGA 1 cut(s) 564
Hpy166II GTNNAC 6 cut(s) 91, 274, 343, 731, 983, 1462
Hpy188I TCNGA 4 cut(s) 120, 303, 688, 1517
Hpy188III TCNNGA 6 cut(s) 143, 266, 344, 830, 1109, 1317
Hpy8I GTNNAC 6 cut(s) 91, 274, 343, 731, 983, 1462
HpyAV CCTTC 7 cut(s) 548, 848, 852, 933, 1316, 1327, 1421
HpyCH4III ACNGT 2 cut(s) 455, 683
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 6 cut(s) 45, 157, 255, 464, 1341, 1383
HpyF10VI GCNNNNNNNGC 3 cut(s) 481, 709, 823
HpyF3I CTNAG 7 cut(s) 8, 104, 141, 561, 626, 1033, 1244
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 2 cut(s) 216, 826
Hsp92II CATG 6 cut(s) 166, 412, 698, 878, 1112, 1493
HspAI GCGC 3 cut(s) 5, 900, 902
Kzo9I GATC 5 cut(s) 237, 790, 832, 1358, 1391
LmnI GCTCC 2 cut(s) 557, 883
LweI GCATC 1 cut(s) 788
MaeI CTAG 4 cut(s) 1074, 1149, 1254, 1275
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 5 cut(s) 290, 570, 1048, 1427, 1470
MalI GATC 5 cut(s) 239, 792, 834, 1360, 1393
MboI GATC 5 cut(s) 237, 790, 832, 1358, 1391
MboII GAAGA 5 cut(s) 133, 652, 1112, 1226, 1486
MflI RGATCY 2 cut(s) 832, 1358
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 8 cut(s) 17, 34, 190, 297, 644, 1142, 1294, 1312
MlyI GAGTC 1 cut(s) 572
MroXI GAANNNNTTC 1 cut(s) 1104
MseI TTAA 9 cut(s) 95, 189, 296, 738, 959, 999, 1058, 1347, 1500
MslI CAYNNNNRTG 1 cut(s) 1113
MspI CCGG 3 cut(s) 152, 196, 1018
MspR9I CCNGG 4 cut(s) 131, 196, 416, 616
MvaI CCWGG 3 cut(s) 131, 416, 616
MvnI CGCG 1 cut(s) 902
MwoI GCNNNNNNNGC 3 cut(s) 481, 709, 823
NciI CCSGG 1 cut(s) 196
NdeII GATC 5 cut(s) 237, 790, 832, 1358, 1391
NheI GCTAGC 1 cut(s) 1148
NlaIII CATG 6 cut(s) 166, 412, 698, 878, 1112, 1493
NlaIV GGNNCC 2 cut(s) 527, 760
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 290, 570, 1470
NspI RCATGY 2 cut(s) 412, 878
NspV TTCGAA 1 cut(s) 32
PaeI GCATGC 1 cut(s) 878
PagI TCATGA 1 cut(s) 1108
PaqCI CACCTGC 2 cut(s) 583, 899
PauI GCGCGC 1 cut(s) 900
PceI AGGCCT 1 cut(s) 109
PciI ACATGT 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 1104
PfeI GAWTC 2 cut(s) 115, 126
PfoI TCCNGGA 2 cut(s) 129, 194
PinAI ACCGGT 1 cut(s) 1017
PkrI GCNGC 1 cut(s) 825
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 184
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 129, 414, 614
PspGI CCWGG 3 cut(s) 129, 414, 614
PspN4I GGNNCC 2 cut(s) 527, 760
PspPI GGNCC 4 cut(s) 133, 184, 612, 701
PspPPI RGGWCCY 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 832, 1358
PteI GCGCGC 1 cut(s) 900
RsaI GTAC 4 cut(s) 273, 375, 520, 1160
RsaNI GTAC 4 cut(s) 272, 374, 519, 1159
RseI CAYNNNNRTG 1 cut(s) 1113
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 9 cut(s) 95, 189, 296, 738, 959, 999, 1058, 1347, 1500
SatI GCNGC 1 cut(s) 824
Sau3AI GATC 5 cut(s) 237, 790, 832, 1358, 1391
Sau96I GGNCC 4 cut(s) 133, 184, 612, 701
ScaI AGTACT 1 cut(s) 1160
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 4 cut(s) 131, 196, 416, 616
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 1 cut(s) 788
SfcI CTRYAG 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 32
SinI GGWCC 2 cut(s) 133, 184
SmiMI CAYNNNNRTG 1 cut(s) 1113
SphI GCATGC 1 cut(s) 878
Sse9I AATT 8 cut(s) 17, 34, 190, 297, 644, 1142, 1294, 1312
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 3 cut(s) 817, 823, 992
SspMI CTAG 4 cut(s) 1074, 1149, 1254, 1275
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 4 cut(s) 129, 194, 414, 614
StyI CCWWGG 2 cut(s) 1222, 1232
TaaI ACNGT 2 cut(s) 455, 683
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 32, 65
TaqII GACCGA 1 cut(s) 150
TasI AATT 8 cut(s) 17, 34, 190, 297, 644, 1142, 1294, 1312
TatI WGTACW 3 cut(s) 271, 373, 1158
TauI GCSGC 1 cut(s) 826
TfiI GAWTC 2 cut(s) 115, 126
Tru1I TTAA 9 cut(s) 95, 189, 296, 738, 959, 999, 1058, 1347, 1500
Tru9I TTAA 9 cut(s) 95, 189, 296, 738, 959, 999, 1058, 1347, 1500
TscAI CASTG 3 cut(s) 177, 1195, 1401
TseFI GTSAC 3 cut(s) 290, 570, 1470
Tsp45I GTSAC 3 cut(s) 290, 570, 1470
TspDTI ATGAA 6 cut(s) 867, 959, 1097, 1403, 1478, 1486
TspRI CASTG 3 cut(s) 177, 1195, 1401
VpaK11BI GGWCC 2 cut(s) 133, 184
XapI RAATTY 1 cut(s) 34
XceI RCATGY 2 cut(s) 412, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 1461
XmnI GAANNNNTTC 1 cut(s) 1104
XspI CTAG 4 cut(s) 1074, 1149, 1254, 1275
ZrmI AGTACT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.