Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

6799514 .. 6800383

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATAATTAATGAAAATTTGAAGTCTATATTGTGTACAGACGATATTCTAAACTACTCTAATTTATGGGACGGTGATTCGAACTGTGGTGCAAGGGATGGAACTGTTGGAAGGTGTTTTTTTTTTTTGGATGCAAAGGTTTTGGATCCAATAAAGAGTTCTGCTTTGGTGGTTAATGTAGTTGCTTTCAGTTCCCAAGTGTTGTACTTATTGATATGTTTTCTGATCGACTCATTGGGGTTTTGTTCACACTGTGGAGAAGACGTGATTTTGTGTAAAAATTGGAACCAAAAGGAAATTATGGCGCTGAGGAAGAAACTGTGGGAGAGTTCCGATTTCAATGGAAAATTTGTGTACAGCTTTTCGAGGTATTACAGTTCAAACAAGGTGGACCTAAGGAAGCTAAAGCCTAGGATTCAGAATAAAATCCAAAACCGGACTAAGGATTACCCAATGCCGGCCATGATACCGGTGGCCCAGGAGGTCATGGAGTGCCAGAGACTCGTTATGCAAGGTGTCTCTACTCTCCTCAAAATGGTGCCCGTTCTGGCCTGCAAGTTCTGTCCAGAAGTATATATAGGCGAGAAATGCCACTTAATTCAGACTTGTTGTGGCTTTAAACGTCGTGGCAAGAATAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

8.93

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AclWI	GGATC	2 cut(s)	140, 153
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	2 cut(s)	16, 347
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	37, 206, 356
AfiI	CCNNNNNNNGG	3 cut(s)	442, 457, 535
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	22, 340, 381
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	360, 403
AluI	AGCT	2 cut(s)	360, 403
Alw26I	GTCTC	2 cut(s)	493, 523
AlwI	GGATC	2 cut(s)	140, 153
AoxI	GGCC	3 cut(s)	459, 474, 549
ApoI	RAATTY	2 cut(s)	16, 347
AseI	ATTAAT	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	469
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	391, 475
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	391
AvrII	CCTAGG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	543
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	493, 523
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	308
BlnI	CCTAGG	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	391, 475
BmiI	GGNNCC	3 cut(s)	147, 287, 540
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	410, 477
BsaWI	WCCGGW	2 cut(s)	435, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 457, 535
Bse118I	RCCGGY	2 cut(s)	457, 469
Bse21I	CCTNAGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	410, 477
BseGI	GGATG	2 cut(s)	103, 136
BseLI	CCNNNNNNNGG	3 cut(s)	442, 457, 535
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	543
BshFI	GGCC	3 cut(s)	461, 476, 551
BshNI	GGYRCC	1 cut(s)	538
BshTI	ACCGGT	1 cut(s)	469
BsiSI	CCGG	3 cut(s)	436, 458, 470
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	442, 457, 535
BsmAI	GTCTC	2 cut(s)	493, 523
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	461, 476, 551
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	2 cut(s)	35, 354
Bsp143I	GATC	2 cut(s)	145, 225
BspANI	GGCC	3 cut(s)	461, 476, 551
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	147, 287, 540
BspPI	GGATC	2 cut(s)	140, 153
BspT104I	TTCGAA	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	457, 469
BsrGI	TGTACA	2 cut(s)	35, 354
BssAI	RCCGGY	2 cut(s)	457, 469
BssECI	CCNNGG	2 cut(s)	410, 477
BssMI	GATC	2 cut(s)	145, 225
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	6 cut(s)	74, 86, 106, 254, 321, 377
BstAUI	TGTACA	2 cut(s)	35, 354
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	459, 553
BstDEI	CTNAG	3 cut(s)	308, 395, 441
BstF5I	GGATG	2 cut(s)	103, 136
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	148, 228
BstMAI	GTCTC	2 cut(s)	493, 523
BstMBI	GATC	2 cut(s)	145, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	543
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	461, 476, 551
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	103, 136
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	459, 553
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	457, 469
Cfr13I	GGNCC	2 cut(s)	391, 475
Csp6I	GTAC	3 cut(s)	36, 205, 355
CspAI	ACCGGT	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	2 cut(s)	463, 487
CviJI	RGCY	7 cut(s)	360, 403, 409, 461, 476, 551, 615
CviKI_1	RGCY	7 cut(s)	360, 403, 409, 461, 476, 551, 615
CviQI	GTAC	3 cut(s)	36, 205, 355
DdeI	CTNAG	3 cut(s)	308, 395, 441
DpnI	GATC	2 cut(s)	147, 227
DpnII	GATC	2 cut(s)	145, 225
DraI	TTTAAA	1 cut(s)	619
DraIII	CACNNNGTG	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	391
Eco81I	CCTNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	466, 490
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	462, 486
FokI	GGATG	2 cut(s)	110, 143
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	461, 476, 551
HapII	CCGG	3 cut(s)	436, 458, 470
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	466, 490
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	4 cut(s)	77, 230, 415, 501
HpaII	CCGG	3 cut(s)	436, 458, 470
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	4 cut(s)	36, 248, 355, 391
Hpy188I	TCNGA	4 cut(s)	225, 334, 420, 603
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	4 cut(s)	36, 248, 355, 391
Hpy99I	CGWCG	1 cut(s)	627
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	6 cut(s)	74, 86, 106, 254, 321, 377
HpyCH4IV	ACGT	2 cut(s)	264, 622
HpyCH4V	TGCA	4 cut(s)	92, 134, 511, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	3 cut(s)	308, 395, 441
HpySE526I	ACGT	2 cut(s)	264, 622
Hsp92II	CATG	2 cut(s)	466, 490
HspAI	GCGC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	145, 225
LpnPI	CCDG	9 cut(s)	449, 464, 471, 483, 491, 509, 533, 565, 579
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	264, 622
MalI	GATC	2 cut(s)	147, 227
MboI	GATC	2 cut(s)	145, 225
MboII	GAAGA	2 cut(s)	272, 325
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	7 cut(s)	6, 16, 61, 280, 297, 347, 597
MlyI	GAGTC	2 cut(s)	224, 495
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	303, 360, 475, 539
MroNI	GCCGGC	1 cut(s)	457
MseI	TTAA	4 cut(s)	9, 174, 596, 618
MspI	CCGG	3 cut(s)	436, 458, 470
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	588
NaeI	GCCGGC	1 cut(s)	459
NdeII	GATC	2 cut(s)	145, 225
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	466, 490
NlaIV	GGNNCC	3 cut(s)	147, 287, 540
NspV	TTCGAA	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	77, 415
PinAI	ACCGGT	1 cut(s)	469
PleI	GAGTC	2 cut(s)	224, 495
PpsI	GAGTC	2 cut(s)	224, 495
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	147, 287, 540
PspPI	GGNCC	2 cut(s)	391, 475
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	3 cut(s)	37, 206, 356
RsaNI	GTAC	3 cut(s)	36, 205, 355
SaqAI	TTAA	4 cut(s)	9, 174, 596, 618
Sau3AI	GATC	2 cut(s)	145, 225
Sau96I	GGNCC	2 cut(s)	391, 475
SchI	GAGTC	2 cut(s)	224, 495
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	391
Sse9I	AATT	7 cut(s)	6, 16, 61, 280, 297, 347, 597
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	6 cut(s)	74, 86, 106, 254, 321, 377
TaiI	ACGT	2 cut(s)	267, 625
TaqI	TCGA	3 cut(s)	80, 228, 365
TasI	AATT	7 cut(s)	6, 16, 61, 280, 297, 347, 597
TatI	WGTACW	3 cut(s)	35, 204, 354
TfiI	GAWTC	2 cut(s)	77, 415
Tru1I	TTAA	4 cut(s)	9, 174, 596, 618
Tru9I	TTAA	4 cut(s)	9, 174, 596, 618
TscAI	CASTG	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	2 cut(s)	16, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.