Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

22053527 .. 22055993

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G219400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTTTTAGCACAAAAGGAAATTATGGCACTGAGGAAGAAATTGTTTGAGAGTTCCAATTTCAATGGCAAGATTATGTACACCTTTTCAAGGTATTTTAGCTCAAACAAGATGGACTTAAGGAAGCTAAAGCCTATGATTCAGAAGAGAATCCAAGAACGGGCTAAGGATTATCCAGTACCGGGCATGATTCCAGTGGCCCAGGAGGTCCTTAATTCCCGGAGGCTCCTTATGCAAGGTGTCTCTACCCTCCTCAAAGTGTTACCAGTTATGGCCTGCAAGTTCTGCCCGGAAGTATATATAGGCGAGAAAGGCCACGTAATTCAGACTTGTTGTGGTTTCAAACGTCGTGGCAAGAATCGGGTTCATGAATGGATAACTGGTGGTCTAAATGATGTGCTTGCTCCAGTAGAGGCATTTCACCTGAAGCACATGTTCCAGGATGTTATTAAGCACCATCAAAGGTTTGACTTTGAGCGTGTTCCTGCAGTTGTTGAGCTCTGCTGGCAAGCAGGGGCAAATGATGGAAATCAGTATTCAAATTGGAGCCCGGAAAGTGATTGTTGTAGTGTTGATGGAGCTGAGTCTTTGTCACCTGATGAACTGGTTATGATTGCCAGTGGAACTTTGAAGGCATGGGAAGTTCTCAGAAATGGCGTGGAGAAGTTATTGATGGTTTATCCAGCAAAAGTGTGTAAACATTGTTCAGAAGTTCATGTAGGGCCTTCTGGGCATAAGGCTAGGCTTTGTGGAATTTTTAAGTATGAGAGTTGGCAGGGAACGCACTTTTGGAGAAAGGCAAATGTAGATGATCTTGTGCCTCCAAAGATTGTATGGCGGCGCCGGCCTCAGGATCCTCAAGTGCTTTTGAATGAAGGGAGGGGCTTTTATGGGCATGCTCCAGCAGTAGTAGAACTGTGCACACAGGCAGGTGCCATTGCACCCAAGAAGTATCACTGTTTGATGAAACTACAAGGTGTAGCTACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

331

Amino Acids

37.45

Weight (kDa)

9.3

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	920
Acc36I	ACCTGC	1 cut(s)	920
AccB1I	GGYRCC	2 cut(s)	840, 932
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	2 cut(s)	848, 861
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	446
AcyI	GRCGYC	1 cut(s)	841
AfaI	GTAC	2 cut(s)	80, 180
AfiI	CCNNNNNNNGG	4 cut(s)	90, 160, 182, 850
AflII	CTTAAG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	64, 90, 343, 540, 631, 871
AjnI	CCWGG	2 cut(s)	201, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	5 cut(s)	102, 127, 499, 581, 983
AluI	AGCT	5 cut(s)	102, 127, 499, 581, 983
Alw21I	GWGCWC	2 cut(s)	501, 923
Alw26I	GTCTC	1 cut(s)	247
Alw44I	GTGCAC	1 cut(s)	919
AlwI	GGATC	2 cut(s)	848, 861
AoxI	GGCC	5 cut(s)	198, 273, 313, 722, 845
ApaLI	GTGCAC	1 cut(s)	919
ApoI	RAATTY	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	199, 208, 722
AsuC2I	CCSGG	4 cut(s)	183, 220, 290, 551
AsuHPI	GGTGA	2 cut(s)	413, 585
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	923
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	2 cut(s)	840, 932
BanII	GRGCYC	2 cut(s)	501, 551
Bbv12I	GWGCWC	2 cut(s)	501, 923
BccI	CCATC	5 cut(s)	106, 465, 518, 569, 667
BciT130I	CCWGG	2 cut(s)	203, 440
BcnI	CCSGG	4 cut(s)	183, 220, 290, 551
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	844
BfrI	CTTAAG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	920
BglI	GCCNNNNNGGC	1 cut(s)	730
BisI	GCNGC	1 cut(s)	839
BlsI	GCNGC	1 cut(s)	840
Bme1390I	CCNGG	6 cut(s)	183, 203, 220, 290, 440, 551
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	199, 208, 722
BmiI	GGNNCC	5 cut(s)	227, 548, 842, 855, 934
BmrFI	CCNGG	6 cut(s)	183, 203, 220, 290, 440, 551
BpmI	CTGGAG	2 cut(s)	390, 885
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	843
BpuMI	CCSGG	4 cut(s)	183, 220, 290, 551
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	841
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 160, 182, 850
Bse118I	RCCGGY	1 cut(s)	843
Bse1I	ACTGG	7 cut(s)	176, 194, 266, 385, 407, 609, 618
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	203, 440
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	4 cut(s)	90, 160, 182, 850
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	4 cut(s)	23, 573, 661, 863
BseNI	ACTGG	7 cut(s)	176, 194, 266, 385, 407, 609, 618
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	923
BshFI	GGCC	5 cut(s)	200, 275, 315, 724, 847
BshNI	GGYRCC	2 cut(s)	840, 932
BsiHKAI	GWGCWC	2 cut(s)	501, 923
BsiSI	CCGG	5 cut(s)	182, 220, 290, 551, 844
BslI	CCNNNNNNNGG	4 cut(s)	90, 160, 182, 850
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	200, 275, 315, 724, 847
Bsp1286I	GDGCHC	3 cut(s)	501, 551, 923
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	811, 853
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	5 cut(s)	200, 275, 315, 724, 847
BspCNI	CTCAG	4 cut(s)	24, 574, 660, 862
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	5 cut(s)	227, 548, 842, 855, 934
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	920
BspPI	GGATC	2 cut(s)	848, 861
BspT107I	GGYRCC	2 cut(s)	840, 932
BspTI	CTTAAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	7 cut(s)	176, 194, 266, 385, 407, 609, 618
BssAI	RCCGGY	1 cut(s)	843
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	811, 853
BssNI	GRCGYC	1 cut(s)	841
Bst2UI	CCWGG	2 cut(s)	203, 440
Bst4CI	ACNGT	2 cut(s)	918, 959
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	841
BstAFI	CTTAAG	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	6 cut(s)	277, 402, 506, 510, 845, 897
BstDEI	CTNAG	5 cut(s)	32, 165, 582, 647, 849
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	448
BstH2I	RGCGCY	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	2 cut(s)	814, 856
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	811, 853
BstMWI	GCNNNNNNNGC	7 cut(s)	232, 285, 312, 505, 730, 781, 844
BstNI	CCWGG	2 cut(s)	203, 440
BstNSI	RCATGY	2 cut(s)	436, 899
BstSCI	CCNGG	6 cut(s)	181, 201, 218, 288, 438, 549
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	923
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	5 cut(s)	200, 275, 315, 724, 847
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	4 cut(s)	29, 201, 625, 955
BveI	ACCTGC	1 cut(s)	920
Cac8I	GCNNGC	6 cut(s)	277, 402, 506, 510, 845, 897
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	843
Cfr10I	RCCGGY	1 cut(s)	843
Cfr13I	GGNCC	3 cut(s)	199, 208, 722
Csp6I	GTAC	2 cut(s)	79, 179
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	6 cut(s)	187, 368, 433, 636, 716, 896
CviQI	GTAC	2 cut(s)	79, 179
DdeI	CTNAG	5 cut(s)	32, 165, 582, 647, 849
DinI	GGCGCC	1 cut(s)	842
DpnI	GATC	2 cut(s)	813, 855
DpnII	GATC	2 cut(s)	811, 853
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	501, 551
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	208, 722
EcoRII	CCWGG	2 cut(s)	201, 438
EcoT38I	GRGCYC	2 cut(s)	501, 551
EgeI	GGCGCC	1 cut(s)	842
EheI	GGCGCC	1 cut(s)	842
FaeI	CATG	6 cut(s)	190, 371, 436, 639, 719, 899
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	6 cut(s)	186, 367, 432, 635, 715, 895
Fnu4HI	GCNGC	1 cut(s)	839
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	501, 551
Fsp4HI	GCNGC	1 cut(s)	839
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	1 cut(s)	839
GsuI	CTGGAG	2 cut(s)	390, 885
HaeII	RGCGCY	1 cut(s)	844
HaeIII	GGCC	5 cut(s)	200, 275, 315, 724, 847
HapII	CCGG	5 cut(s)	182, 220, 290, 551, 844
HhaI	GCGC	1 cut(s)	843
Hin1I	GRCGYC	1 cut(s)	841
Hin1II	CATG	6 cut(s)	190, 371, 436, 639, 719, 899
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HinfI	GANTC	5 cut(s)	139, 150, 190, 358, 584
HpaII	CCGG	5 cut(s)	182, 220, 290, 551, 844
HphI	GGTGA	2 cut(s)	413, 585
Hpy166II	GTNNAC	3 cut(s)	81, 698, 921
Hpy188I	TCNGA	4 cut(s)	144, 327, 650, 709
Hpy188III	TCNNGA	2 cut(s)	368, 851
Hpy8I	GTNNAC	3 cut(s)	81, 698, 921
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	625, 735, 869
HpyCH4III	ACNGT	2 cut(s)	918, 959
HpyCH4IV	ACGT	2 cut(s)	318, 346
HpyCH4V	TGCA	5 cut(s)	235, 279, 488, 921, 941
HpyF10VI	GCNNNNNNNGC	7 cut(s)	232, 285, 312, 505, 730, 781, 844
HpyF3I	CTNAG	5 cut(s)	32, 165, 582, 647, 849
HpySE526I	ACGT	2 cut(s)	318, 346
Hsp92I	GRCGYC	1 cut(s)	841
Hsp92II	CATG	6 cut(s)	190, 371, 436, 639, 719, 899
HspAI	GCGC	1 cut(s)	841
KasI	GGCGCC	1 cut(s)	840
KroI	GCCGGC	1 cut(s)	843
KroNI	GCCGGC	1 cut(s)	845
Kzo9I	GATC	2 cut(s)	811, 853
LmnI	GCTCC	5 cut(s)	231, 409, 546, 578, 904
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	2 cut(s)	318, 346
MaeIII	GTNAC	2 cut(s)	261, 591
MalI	GATC	2 cut(s)	813, 855
MboI	GATC	2 cut(s)	811, 853
MboII	GAAGA	2 cut(s)	49, 157
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	501, 551, 923
MluCI	AATT	7 cut(s)	21, 41, 58, 214, 321, 541, 753
Mly113I	GGCGCC	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	593
MroNI	GCCGGC	1 cut(s)	843
MseI	TTAA	4 cut(s)	119, 213, 450, 759
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	5 cut(s)	182, 220, 290, 551, 844
MspR9I	CCNGG	6 cut(s)	183, 203, 220, 290, 440, 551
MvaI	CCWGG	2 cut(s)	203, 440
MwoI	GCNNNNNNNGC	7 cut(s)	232, 285, 312, 505, 730, 781, 844
NaeI	GCCGGC	1 cut(s)	845
NarI	GGCGCC	1 cut(s)	841
NciI	CCSGG	4 cut(s)	183, 220, 290, 551
NdeII	GATC	2 cut(s)	811, 853
NgoMIV	GCCGGC	1 cut(s)	843
NlaIII	CATG	6 cut(s)	190, 371, 436, 639, 719, 899
NlaIV	GGNNCC	5 cut(s)	227, 548, 842, 855, 934
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	2 cut(s)	436, 899
PaeI	GCATGC	1 cut(s)	899
PagI	TCATGA	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	920
PciI	ACATGT	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	845
PfeI	GAWTC	4 cut(s)	139, 150, 190, 358
PfoI	TCCNGGA	2 cut(s)	218, 438
PkrI	GCNGC	1 cut(s)	840
PleI	GAGTC	1 cut(s)	592
PluTI	GGCGCC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	208
PscI	ACATGT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	201, 438
PspGI	CCWGG	2 cut(s)	201, 438
PspN4I	GGNNCC	5 cut(s)	227, 548, 842, 855, 934
PspPI	GGNCC	3 cut(s)	199, 208, 722
PspPPI	RGGWCCY	1 cut(s)	208
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	2 cut(s)	80, 180
RsaNI	GTAC	2 cut(s)	79, 179
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	119, 213, 450, 759
SatI	GCNGC	1 cut(s)	839
Sau3AI	GATC	2 cut(s)	811, 853
Sau96I	GGNCC	3 cut(s)	199, 208, 722
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	6 cut(s)	183, 203, 220, 290, 440, 551
SduI	GDGCHC	3 cut(s)	501, 551, 923
SfcI	CTRYAG	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	842
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	118, 858
SmoI	CTYRAG	2 cut(s)	118, 858
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	7 cut(s)	21, 41, 58, 214, 321, 541, 753
SsiI	CCGC	1 cut(s)	838
SspDI	GGCGCC	1 cut(s)	840
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	6 cut(s)	181, 201, 218, 288, 438, 549
TaaI	ACNGT	2 cut(s)	918, 959
TaiI	ACGT	2 cut(s)	321, 349
TasI	AATT	7 cut(s)	21, 41, 58, 214, 321, 541, 753
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	841
TfiI	GAWTC	4 cut(s)	139, 150, 190, 358
Tru1I	TTAA	4 cut(s)	119, 213, 450, 759
Tru9I	TTAA	4 cut(s)	119, 213, 450, 759
TscAI	CASTG	4 cut(s)	36, 201, 625, 962
TseFI	GTSAC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	6 cut(s)	356, 384, 615, 704, 888, 980
TspRI	CASTG	4 cut(s)	36, 201, 625, 962
Vha464I	CTTAAG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	919
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	2 cut(s)	436, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.