Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7687169 .. 7688191

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1106100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTCCAGGATGTTATAAAACACCATCAGAGGTTTGACTTTGAACGTGTTCCTGCAGTTGTCGAGCTATGCTGGCAAGCAGGGGCTAATGATGGAAATCATTTAAATTGGAACTCTGAAAGTGATTGTGTTGGCGTTGATGGAGCTGAGTCTTTGTCATCTGATGAACTGATTCTGGTTGCCAGTGGAACTTTAAGGGCATGGGATATACTTAGAAATGGCGTGGAGAAGTTGCTGATGGTTTATCCAGCAAAAGTCTGTAAACATTGTTCAGAAATTCATGTTGGGCCATCTGGGCATAAGGCTAGGCTTTGCGGAATTTTTAAGTATGAGAGTCGGCAGGGAACCCATTTTTGGAGGAAGGCGAATGTAGATGATCTTGTACCTCCAAAGACTGTATGGCGGCGGCGTCCTCAGGATCCTCAAGTACTTTTGAATGAAGGGAGGGGATTTTATGGGCATGCTCCGGCAGTAGTAGAACTATGTACACAGGCAGGTGCCATTGCACCTCCAAAGTATCACTGCATGATGAAACTGCAGGGTGTAAGTACCACACTTGGAGATCAAAGGTTGCTCCACCCGAATGATCAAATGAAAATGCCGGTTGATTCGAAGGTAGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

209

Amino Acids

23.39

Weight (kDa)

7.13

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	3 - 29	2e-06	APO RNA-binding
APO_RNA-bind	PF05634	54 - 176	1.1e-22	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	3 cut(s)	315, 403, 406
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	2 cut(s)	276, 318
AcyI	GRCGYC	1 cut(s)	409
AfaI	GTAC	4 cut(s)	384, 429, 487, 550
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	44, 436
AjnI	CCWGG	1 cut(s)	6
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 337, 369
AluBI	AGCT	2 cut(s)	67, 146
AluI	AGCT	2 cut(s)	67, 146
AlwI	GGATC	2 cut(s)	413, 426
AoxI	GGCC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	276, 318
Asp700I	GAANNNNTTC	2 cut(s)	48, 171
AspS9I	GGNCC	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	611
AxyI	CCTNAGG	1 cut(s)	414
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	497
BccI	CCATC	5 cut(s)	33, 86, 134, 232, 298
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	586
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	54, 536
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	404, 407
BlsI	GCNGC	2 cut(s)	405, 408
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	346, 420, 499
BmrFI	CCNGG	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	138, 428
BseNI	ACTGG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	467, 602
BslI	CCNNNNNNNGG	1 cut(s)	354
BsnI	GGCC	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	376, 418, 562, 586
BspACI	CCGC	3 cut(s)	315, 403, 406
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	139, 427
BspLI	GGNNCC	3 cut(s)	346, 420, 499
BspMAI	CTGCAG	2 cut(s)	58, 540
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	413, 426
BspT104I	TTCGAA	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	601
BsrGI	TGTACA	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	601
BssMI	GATC	4 cut(s)	376, 418, 562, 586
BssNI	GRCGYC	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	74, 78, 462
BstDEI	CTNAG	3 cut(s)	147, 212, 414
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	4 cut(s)	379, 421, 565, 589
BstMBI	GATC	4 cut(s)	376, 418, 562, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 295
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	2 cut(s)	54, 536
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	190, 520
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	74, 78, 462
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	4 cut(s)	383, 428, 486, 549
CviAII	CATG	4 cut(s)	201, 281, 461, 526
CviJI	RGCY	6 cut(s)	67, 86, 146, 289, 305, 310
CviKI_1	RGCY	6 cut(s)	67, 86, 146, 289, 305, 310
CviQI	GTAC	4 cut(s)	383, 428, 486, 549
DdeI	CTNAG	3 cut(s)	147, 212, 414
DpnI	GATC	4 cut(s)	378, 420, 564, 588
DpnII	GATC	4 cut(s)	376, 418, 562, 586
DraI	TTTAAA	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	204, 284, 464, 529
FatI	CATG	4 cut(s)	200, 280, 460, 525
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	404, 407
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	404, 407
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	404, 407
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	467, 602
HgaI	GACGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	4 cut(s)	204, 284, 464, 529
HinfI	GANTC	4 cut(s)	149, 172, 334, 608
HpaII	CCGG	2 cut(s)	467, 602
Hpy166II	GTNNAC	2 cut(s)	263, 488
Hpy188I	TCNGA	4 cut(s)	30, 118, 163, 274
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	2 cut(s)	263, 488
HpyAV	CCTTC	3 cut(s)	355, 434, 607
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	4 cut(s)	56, 506, 525, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 295
HpyF3I	CTNAG	3 cut(s)	147, 212, 414
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	204, 284, 464, 529
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	376, 418, 562, 586
LmnI	GCTCC	3 cut(s)	143, 469, 579
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	46
MalI	GATC	4 cut(s)	378, 420, 564, 588
MboI	GATC	4 cut(s)	376, 418, 562, 586
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	3 cut(s)	106, 276, 318
MlyI	GAGTC	2 cut(s)	158, 343
MnlI	CCTC	7 cut(s)	24, 351, 396, 423, 432, 438, 519
MroXI	GAANNNNTTC	2 cut(s)	48, 171
MseI	TTAA	3 cut(s)	104, 194, 324
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	2 cut(s)	467, 602
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	73, 295
NdeII	GATC	4 cut(s)	376, 418, 562, 586
NlaIII	CATG	4 cut(s)	204, 284, 464, 529
NlaIV	GGNNCC	3 cut(s)	346, 420, 499
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	485
PdmI	GAANNNNTTC	2 cut(s)	48, 171
PfeI	GAWTC	2 cut(s)	172, 608
PfoI	TCCNGGA	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	405, 408
PleI	GAGTC	2 cut(s)	157, 342
PpsI	GAGTC	2 cut(s)	157, 342
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	346, 420, 499
PspPI	GGNCC	1 cut(s)	287
PsrI	GAACNNNNNNTAC	2 cut(s)	253, 285
PstI	CTGCAG	2 cut(s)	58, 540
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	4 cut(s)	384, 429, 487, 550
RsaNI	GTAC	4 cut(s)	383, 428, 486, 549
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	104, 194, 324
SatI	GCNGC	2 cut(s)	404, 407
Sau3AI	GATC	4 cut(s)	376, 418, 562, 586
Sau96I	GGNCC	1 cut(s)	287
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	2 cut(s)	158, 343
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	9 cut(s)	35, 49, 69, 148, 388, 499, 511, 572, 618
SfcI	CTRYAG	2 cut(s)	54, 536
SfuI	TTCGAA	1 cut(s)	611
SmiI	ATTTAAAT	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	3 cut(s)	106, 276, 318
SsiI	CCGC	3 cut(s)	315, 403, 406
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	6
SwaI	ATTTAAAT	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	63, 611
TasI	AATT	3 cut(s)	106, 276, 318
TatI	WGTACW	2 cut(s)	427, 485
TauI	GCSGC	2 cut(s)	406, 409
TfiI	GAWTC	2 cut(s)	172, 608
Tru1I	TTAA	3 cut(s)	104, 194, 324
Tru9I	TTAA	3 cut(s)	104, 194, 324
TscAI	CASTG	2 cut(s)	190, 527
TspDTI	ATGAA	5 cut(s)	180, 269, 453, 545, 608
TspRI	CASTG	2 cut(s)	190, 527
XapI	RAATTY	2 cut(s)	276, 318
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	2 cut(s)	48, 171
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.