Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7886032 .. 7888340

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1094000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGCTGAGGAAGAAACTGTGGGAGAGTTCCGATTTCAATGGAAAATTTGTGTACAGCTTTTCAAGGTATTACAGTTCAAACAAGGTGGACTTAAGGAAGCTAAAGCCTATGATTCATAATAAAATCCAAAACCCGGCTAAGGATTACCCAATGCTGGCCATGATACCGGTAGCCCAGGAGGTCATGGAGTGCCGGAGACTCGTTATGCAAGGTGTCTCTACTCTCCTCAAAATGGTGCCCGTTCTGGCCTGCAATTGTCGAGCTATGCTGGCAAGCAGGGGAGAACGATATTATGATGGAAATCATTTAAATTGGAACTTTGAAAGTGAGTGTGTTGGCGTTAACGGAGCTGAGTCTTTGTTACCCGATGAACTGATTCTGGTTGCCAGTGAAACTTTGAGGGCATGGGAAATTCTTAGAAATGGCATGGAGAAGTTGCTGAAGGTTTATCCAGCGAAAGTCTGTAGACATTATTTAGAAGTTCGTTTTGGGCTATCTGGACATAAGGCTAGGCTTCATGGAGTTTTCAAGTATGAGAGTGAGCAGGGAATCCACTTTTGGAGAAGAGCAAATGTGGATGATCATGTGCCTTCAAAGAGTGTATGGCGGTGGCAGCCTCAGGATCCTCAAGTACCTTCGAATGAAGGGAAGGGATTTTATGGGCATGCTCCTGCAATGATAAAACTATGTACACAAGCAGGTGTCATTGCACCCCCCAAAGTATCACTGCATGATGAAACTGCAGGGTGTAAGTACCACACTTGGAGATCAAAGGTTGTTCCACTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

265

Amino Acids

30.28

Weight (kDa)

9.31

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	28 - 87	1.5e-06	APO RNA-binding
APO_RNA-bind	PF05634	120 - 237	3.2e-14	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	2 cut(s)	620, 633
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	47, 414
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	4 cut(s)	56, 636, 694, 758
AfiI	CCNNNNNNNGG	4 cut(s)	136, 142, 157, 235
AflII	CTTAAG	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	7 cut(s)	40, 66, 81, 326, 532, 597, 791
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	4 cut(s)	474, 506, 544, 576
AluBI	AGCT	4 cut(s)	60, 103, 266, 353
AluI	AGCT	4 cut(s)	60, 103, 266, 353
Alw26I	GTCTC	2 cut(s)	193, 223
AlwI	GGATC	2 cut(s)	620, 633
AoxI	GGCC	2 cut(s)	159, 249
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	2 cut(s)	47, 414
AsiGI	ACCGGT	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	641
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	193, 223
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	466, 744
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	1 cut(s)	617
BlsI	GCNGC	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	137, 179
BmiI	GGNNCC	2 cut(s)	240, 627
BmrFI	CCNGG	2 cut(s)	137, 179
Bpu10I	CCTNAGC	2 cut(s)	8, 141
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 142, 157, 235
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	684, 708
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	4 cut(s)	136, 142, 157, 235
BseMI	GCAATG	2 cut(s)	684, 708
BseMII	CTCAG	2 cut(s)	345, 635
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	628
BshFI	GGCC	2 cut(s)	161, 251
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	137, 170, 196
BslI	CCNNNNNNNGG	4 cut(s)	136, 142, 157, 235
BsmAI	GTCTC	2 cut(s)	193, 223
BsnI	GGCC	2 cut(s)	161, 251
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp1407I	TGTACA	2 cut(s)	54, 692
Bsp143I	GATC	3 cut(s)	583, 625, 770
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	2 cut(s)	161, 251
BspCNI	CTCAG	2 cut(s)	346, 634
BspLI	GGNNCC	2 cut(s)	240, 627
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	2 cut(s)	620, 633
BspQI	GCTCTTC	1 cut(s)	562
BspT104I	TTCGAA	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	238
BspTI	CTTAAG	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	684, 708
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	2 cut(s)	54, 692
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	583, 625, 770
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	21, 77
Bst6I	CTCTTC	1 cut(s)	562
BstAFI	CTTAAG	1 cut(s)	94
BstAUI	TGTACA	2 cut(s)	54, 692
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	5 cut(s)	159, 253, 273, 277, 669
BstDEI	CTNAG	5 cut(s)	8, 141, 354, 419, 621
BstF5I	GGATG	1 cut(s)	586
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	586, 628, 773
BstMAI	GTCTC	2 cut(s)	193, 223
BstMBI	GATC	3 cut(s)	583, 625, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 616
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	135, 177
BstSFI	CTRYAG	2 cut(s)	466, 744
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	161, 251
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	397, 728
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	5 cut(s)	159, 253, 273, 277, 669
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	55, 635, 693, 757
CspAI	ACCGGT	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	8 cut(s)	163, 187, 408, 430, 521, 587, 668, 734
CviQI	GTAC	4 cut(s)	55, 635, 693, 757
DdeI	CTNAG	5 cut(s)	8, 141, 354, 419, 621
DpnI	GATC	3 cut(s)	585, 627, 772
DpnII	GATC	3 cut(s)	583, 625, 770
DraI	TTTAAA	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	8 cut(s)	166, 190, 411, 433, 524, 590, 671, 737
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	8 cut(s)	162, 186, 407, 429, 520, 586, 667, 733
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	617
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	617
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	161, 251
HapII	CCGG	3 cut(s)	137, 170, 196
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	8 cut(s)	166, 190, 411, 433, 524, 590, 671, 737
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	5 cut(s)	115, 201, 356, 379, 552
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	3 cut(s)	137, 170, 196
Hpy166II	GTNNAC	5 cut(s)	55, 91, 346, 470, 695
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	501, 623
Hpy8I	GTNNAC	5 cut(s)	55, 91, 346, 470, 695
HpyAV	CCTTC	5 cut(s)	439, 603, 641, 646, 648
HpyCH4III	ACNGT	2 cut(s)	21, 77
HpyCH4V	TGCA	6 cut(s)	211, 255, 677, 713, 733, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 616
HpyF3I	CTNAG	5 cut(s)	8, 141, 354, 419, 621
Hsp92II	CATG	8 cut(s)	166, 190, 411, 433, 524, 590, 671, 737
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	583, 625, 770
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	350, 676
Lsp1109I	GCAGC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	3 cut(s)	585, 627, 772
MboI	GATC	3 cut(s)	583, 625, 770
MboII	GAAGA	2 cut(s)	25, 579
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	4 cut(s)	47, 256, 313, 414
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	195, 365
MnlI	CCTC	6 cut(s)	3, 175, 239, 396, 630, 639
Mox20I	TGGCCA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	95, 311, 345
Msp20I	TGGCCA	1 cut(s)	161
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	3 cut(s)	137, 170, 196
MspR9I	CCNGG	2 cut(s)	137, 179
MunI	CAATTG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	272, 616
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	583, 625, 770
NlaIII	CATG	8 cut(s)	166, 190, 411, 433, 524, 590, 671, 737
NlaIV	GGNNCC	2 cut(s)	240, 627
NspI	RCATGY	1 cut(s)	671
NspV	TTCGAA	1 cut(s)	641
PaeI	GCATGC	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	115, 379, 552
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	618
PleI	GAGTC	2 cut(s)	195, 364
PpsI	GAGTC	2 cut(s)	195, 364
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	240, 627
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	4 cut(s)	56, 636, 694, 758
RsaNI	GTAC	4 cut(s)	55, 635, 693, 757
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	95, 311, 345
SatI	GCNGC	1 cut(s)	617
Sau3AI	GATC	3 cut(s)	583, 625, 770
SchI	GAGTC	2 cut(s)	195, 365
ScrFI	CCNGG	2 cut(s)	137, 179
SduI	GDGCHC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	466, 744
SfuI	TTCGAA	1 cut(s)	641
SmiI	ATTTAAAT	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	94, 630
SmoI	CTYRAG	2 cut(s)	94, 630
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	4 cut(s)	47, 256, 313, 414
SsiI	CCGC	1 cut(s)	610
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	135, 177
SwaI	ATTTAAAT	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	21, 77
TaqI	TCGA	2 cut(s)	262, 641
TasI	AATT	4 cut(s)	47, 256, 313, 414
TatI	WGTACW	2 cut(s)	54, 692
TfiI	GAWTC	3 cut(s)	115, 379, 552
Tru1I	TTAA	3 cut(s)	95, 311, 345
Tru9I	TTAA	3 cut(s)	95, 311, 345
TscAI	CASTG	2 cut(s)	397, 735
TseI	GCWGC	1 cut(s)	616
TspDTI	ATGAA	5 cut(s)	107, 387, 509, 660, 753
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	397, 735
Vha464I	CTTAAG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	47, 414
XceI	RCATGY	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.