Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029076.1

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

21429 .. 21689

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029076.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggcgctgaggagaaaattgggggagagttcgaatttcagttgcaaaatgatgttgagcttttcgaggtattacaactcaaacaaagtggacttaaagaagctgaggcctatgattctgaagagaatccaggaccgagctaaggactatccggtgcagagcatgataccagtggccgaggaggtccttaattcccggaggcttcttattcaaggcgtctctaccctcctcaaagtgatcccagttgtggcctgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

86

Amino Acids

9.92

Weight (kDa)

10.29

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	142, 247
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	3 cut(s)	60, 103, 140
AluI	AGCT	3 cut(s)	60, 103, 140
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	107, 174, 249
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	133, 184
AsuC2I	CCSGG	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	133, 184
BbvCI	CCTCAGC	2 cut(s)	8, 104
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	131, 196
Bme18I	GGWCC	2 cut(s)	133, 184
BmgT120I	GGNCC	2 cut(s)	133, 184
BmrFI	CCNGG	2 cut(s)	131, 196
BmrI	ACTGGG	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	236
Bpu10I	CCTNAGC	3 cut(s)	8, 104, 141
Bpu14I	TTCGAA	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 247
Bse1I	ACTGG	2 cut(s)	170, 242
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	142, 247
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	170, 242
BseRI	GAGGAG	3 cut(s)	25, 194, 218
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	3 cut(s)	109, 176, 251
BsiSI	CCGG	2 cut(s)	152, 196
BslI	CCNNNNNNNGG	2 cut(s)	142, 247
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	109, 176, 251
Bsp119I	TTCGAA	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	237
BspANI	GGCC	3 cut(s)	109, 176, 251
BspCNI	CTCAG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	170, 242
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	8, 104, 141
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	129, 194
BsuRI	GGCC	3 cut(s)	109, 176, 251
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	133, 184
CseI	GACGC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	7 cut(s)	60, 103, 109, 140, 176, 202, 251
CviKI_1	RGCY	7 cut(s)	60, 103, 109, 140, 176, 202, 251
DdeI	CTNAG	3 cut(s)	8, 104, 141
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco147I	AGGCCT	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	133, 184
Eco57I	CTGAAG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	113, 164
FatI	CATG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	109, 176, 251
HapII	CCGG	2 cut(s)	152, 196
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	115, 126
HpaII	CCGG	2 cut(s)	152, 196
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	45, 157, 255
HpyF3I	CTNAG	3 cut(s)	8, 104, 141
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	116, 143, 165, 183, 209, 255
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	3 cut(s)	17, 34, 190
MnlI	CCTC	8 cut(s)	3, 60, 99, 172, 175, 192, 236, 239
MseI	TTAA	2 cut(s)	95, 189
MspI	CCGG	2 cut(s)	152, 196
MspR9I	CCNGG	2 cut(s)	131, 196
MvaI	CCWGG	1 cut(s)	131
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	115, 126
PfoI	TCCNGGA	2 cut(s)	129, 194
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	133, 184
PspPPI	RGGWCCY	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	95, 189
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	133, 184
ScrFI	CCNGG	2 cut(s)	131, 196
SetI	ASST	5 cut(s)	62, 71, 105, 142, 186
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	2 cut(s)	133, 184
Sse9I	AATT	3 cut(s)	17, 34, 190
SseBI	AGGCCT	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	129, 194
TaqI	TCGA	2 cut(s)	32, 65
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	17, 34, 190
TfiI	GAWTC	2 cut(s)	115, 126
Tru1I	TTAA	2 cut(s)	95, 189
Tru9I	TTAA	2 cut(s)	95, 189
TscAI	CASTG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	133, 184
XapI	RAATTY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.