Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Forward (+)

479352 .. 483182

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G006000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCACTGAGGAAGAAATTGTGCGAGAGTTCCAATTTCAATGGCAAACTTATGTACACCTTTTCAAGGTATTTTAGCTCAAATAAGATGGACTTAAGGAAGCTAAAGCCTATGATTCAGAAGAGAATCCAAGACCGGGCTAAGGATTACCCAGTACTGGGCATGATTCCAGTGGCCCAGGAGGTCCTTAATTCCCGGAGGCTCATTATGCAAGGTGTCTCTACTCTCCTCAAAGTGTTGCCAGTTATGGCCTGCAAGTTCTGTCCAGAAGTATACATAGGCGAGAAAGGCCACTTAATTCAGACTTGTTGTGGTTTCAAACATCGTGACAAGAATCGCGTTCATGAATGGATAACTGGTGGTTTAAATGATGTGCTTGCTCCAGTAGAGGCATTTCACCTGAAGCACATGTTCAAGGATGTTATTAAGCACCATCAGAGGTTTGACTTTGAACGTGTTCCTGCCGTTGTCGAGCTATGCTGGCAAGCAGGGGCAAATGATGAAAATCAGTATTCAAATTGGAACCCGGAAAGTGATTGTTTTAGTGTTGATGGAGCTGAGTCGTTGCCATCTGATGAACTTCTTATGATTGCCAGTGGAACTTTGAGGGCATGGGAAATTCTCAGAAATGGTGTGGAGAAGTTGTTGACGGTTTATCCAGCAAAAGTATGTAACCATTGTTCAGAAGTTCATATAGGGCCATCTGGGCATAAGGCTAGGCTTAGTTGGCAGGGAACCCACTTTTGGAGAAAGGCAAATGTAGATGATCTTATGCCTCCAAAGATTGTATGGCGGCGGCGGCTTCAGGATCCTCAAGTGCTTTTGAACGAAGGGAGGGGCTTTTATGGGCATGCTCCAGCAGTAGTAGAACTATGCACACAGGCTGGTGCCGTTGCACCTTTGAAGTATCACTGTTTGATGAAACTGCAGGGCGTAGCCACACTTGGAAATCAAAGTTTGTACCATCCGAAAGATCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

328

Amino Acids

37.3

Weight (kDa)

9.11

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	793, 796, 799
AclWI	GGATC	2 cut(s)	803, 816
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	2 cut(s)	422, 788
AfaI	GTAC	3 cut(s)	56, 156, 962
AfiI	CCNNNNNNNGG	6 cut(s)	66, 136, 142, 157, 158, 744
AflII	CTTAAG	1 cut(s)	94
AflIII	ACRYGT	2 cut(s)	408, 454
AgsI	TTSAA	8 cut(s)	40, 66, 319, 415, 452, 516, 826, 904
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	727, 759
AluBI	AGCT	4 cut(s)	78, 103, 475, 557
AluI	AGCT	4 cut(s)	78, 103, 475, 557
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	803, 816
AoxI	GGCC	4 cut(s)	174, 249, 289, 698
ApoI	RAATTY	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	175, 184, 698
AsuC2I	CCSGG	3 cut(s)	137, 196, 527
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	887
BccI	CCATC	6 cut(s)	82, 441, 545, 577, 709, 972
BceAI	ACGGC	2 cut(s)	449, 875
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	3 cut(s)	137, 196, 527
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	926
BfrI	CTTAAG	1 cut(s)	94
BglI	GCCNNNNNGGC	1 cut(s)	706
BisI	GCNGC	3 cut(s)	794, 797, 800
BlsI	GCNGC	3 cut(s)	795, 798, 801
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	4 cut(s)	137, 179, 196, 527
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	175, 184, 698
BmiI	GGNNCC	4 cut(s)	524, 736, 810, 889
BmrFI	CCNGG	4 cut(s)	137, 179, 196, 527
BmrI	ACTGGG	2 cut(s)	146, 167
BmuI	ACTGGG	2 cut(s)	146, 167
BpmI	CTGGAG	2 cut(s)	366, 840
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	798
BpuMI	CCSGG	3 cut(s)	137, 196, 527
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 136, 142, 157, 158, 744
Bse1I	ACTGG	7 cut(s)	152, 162, 170, 242, 361, 383, 594
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	424, 964
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	6 cut(s)	66, 136, 142, 157, 158, 744
BseMII	CTCAG	2 cut(s)	549, 637
BseNI	ACTGG	7 cut(s)	152, 162, 170, 242, 361, 383, 594
BseRI	GAGGAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	176, 251, 291, 700
BshNI	GGYRCC	1 cut(s)	887
BsiSI	CCGG	3 cut(s)	136, 196, 527
BslI	CCNNNNNNNGG	6 cut(s)	66, 136, 142, 157, 158, 744
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	176, 251, 291, 700
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	766, 808, 973
BspACI	CCGC	3 cut(s)	793, 796, 799
BspANI	GGCC	4 cut(s)	176, 251, 291, 700
BspCNI	CTCAG	2 cut(s)	550, 636
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	524, 736, 810, 889
BspMAI	CTGCAG	1 cut(s)	930
BspPI	GGATC	2 cut(s)	803, 816
BspT107I	GGYRCC	1 cut(s)	887
BspTI	CTTAAG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	7 cut(s)	152, 162, 170, 242, 361, 383, 594
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	766, 808, 973
BssNAI	GTATAC	1 cut(s)	274
Bst1107I	GTATAC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	652, 914
Bst6I	CTCTTC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	5 cut(s)	253, 378, 482, 486, 852
BstDEI	CTNAG	5 cut(s)	8, 141, 558, 623, 722
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	424, 964
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	769, 811, 976
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	766, 808, 973
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 288, 481, 706, 727, 799
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	412, 854
BstSCI	CCNGG	4 cut(s)	135, 177, 194, 525
BstSFI	CTRYAG	1 cut(s)	926
BstUI	CGCG	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BstZ17I	GTATAC	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	176, 251, 291, 700
BtsCI	GGATG	2 cut(s)	424, 964
BtsIMutI	CAGTG	4 cut(s)	5, 177, 601, 910
Cac8I	GCNNGC	5 cut(s)	253, 378, 482, 486, 852
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	3 cut(s)	175, 184, 698
Csp6I	GTAC	3 cut(s)	55, 155, 961
CviAII	CATG	5 cut(s)	163, 344, 409, 612, 851
CviQI	GTAC	3 cut(s)	55, 155, 961
DdeI	CTNAG	5 cut(s)	8, 141, 558, 623, 722
DpnI	GATC	3 cut(s)	768, 810, 975
DpnII	GATC	3 cut(s)	766, 808, 973
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	422, 788
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	166, 347, 412, 615, 854
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	5 cut(s)	162, 343, 408, 611, 850
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	794, 797, 800
FokI	GGATG	2 cut(s)	431, 951
Fsp4HI	GCNGC	3 cut(s)	794, 797, 800
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	3 cut(s)	794, 797, 800
GsuI	CTGGAG	2 cut(s)	366, 840
HaeIII	GGCC	4 cut(s)	176, 251, 291, 700
HapII	CCGG	3 cut(s)	136, 196, 527
Hin1II	CATG	5 cut(s)	166, 347, 412, 615, 854
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	5 cut(s)	115, 126, 166, 334, 560
HpaII	CCGG	3 cut(s)	136, 196, 527
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	57, 274, 648
Hpy188I	TCNGA	7 cut(s)	120, 303, 438, 574, 626, 685, 969
Hpy188III	TCNNGA	4 cut(s)	266, 326, 344, 806
Hpy8I	GTNNAC	3 cut(s)	57, 274, 648
HpyAV	CCTTC	1 cut(s)	824
HpyCH4III	ACNGT	2 cut(s)	652, 914
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	211, 255, 876, 896, 928
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 288, 481, 706, 727, 799
HpyF3I	CTNAG	5 cut(s)	8, 141, 558, 623, 722
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	5 cut(s)	166, 347, 412, 615, 854
Kzo9I	GATC	3 cut(s)	766, 808, 973
LmnI	GCTCC	3 cut(s)	385, 554, 859
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	326, 671
MalI	GATC	3 cut(s)	768, 810, 975
MboI	GATC	3 cut(s)	766, 808, 973
MboII	GAAGA	2 cut(s)	25, 133
MflI	RGATCY	1 cut(s)	808
MluCI	AATT	6 cut(s)	17, 34, 190, 297, 517, 618
MlyI	GAGTC	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	5 cut(s)	95, 189, 296, 365, 426
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	3 cut(s)	136, 196, 527
MspR9I	CCNGG	4 cut(s)	137, 179, 196, 527
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	208, 288, 481, 706, 727, 799
NciI	CCSGG	3 cut(s)	137, 196, 527
NdeII	GATC	3 cut(s)	766, 808, 973
NlaIII	CATG	5 cut(s)	166, 347, 412, 615, 854
NlaIV	GGNNCC	4 cut(s)	524, 736, 810, 889
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	2 cut(s)	412, 854
PaeI	GCATGC	1 cut(s)	854
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	115, 126, 166, 334
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	795, 798, 801
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	184
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	524, 736, 810, 889
PspPI	GGNCC	3 cut(s)	175, 184, 698
PspPPI	RGGWCCY	1 cut(s)	184
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
PstI	CTGCAG	1 cut(s)	930
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	3 cut(s)	56, 156, 962
RsaNI	GTAC	3 cut(s)	55, 155, 961
SaqAI	TTAA	5 cut(s)	95, 189, 296, 365, 426
SatI	GCNGC	3 cut(s)	794, 797, 800
Sau3AI	GATC	3 cut(s)	766, 808, 973
Sau96I	GGNCC	3 cut(s)	175, 184, 698
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	4 cut(s)	137, 179, 196, 527
SfcI	CTRYAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	94, 813
SmoI	CTYRAG	2 cut(s)	94, 813
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	6 cut(s)	17, 34, 190, 297, 517, 618
SsiI	CCGC	3 cut(s)	793, 796, 799
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	135, 177, 194, 525
TaaI	ACNGT	2 cut(s)	652, 914
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	471
TasI	AATT	6 cut(s)	17, 34, 190, 297, 517, 618
TatI	WGTACW	2 cut(s)	54, 154
TauI	GCSGC	3 cut(s)	796, 799, 802
TfiI	GAWTC	4 cut(s)	115, 126, 166, 334
Tru1I	TTAA	5 cut(s)	95, 189, 296, 365, 426
Tru9I	TTAA	5 cut(s)	95, 189, 296, 365, 426
TscAI	CASTG	4 cut(s)	12, 177, 601, 917
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	6 cut(s)	332, 360, 516, 591, 680, 935
TspRI	CASTG	4 cut(s)	12, 177, 601, 917
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	2 cut(s)	412, 854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	717
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.