Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002143

Physical Location & Seq

Genomic Coordinates Reverse (-)

25830461 .. 25833895

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1177800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCACTGAGGAAGAAATTGTGCGAGAGATCCAATTTCAATGGCAAAATTATGGACATCTTTGCAAGGTATTACAGCTCGAAGATGGACTTAAGGAAGCTAAAGCCTATGATTCAAAAGAGAATCCAAAACCGAGCTAAAGATTACCCAGTGCCTACCATGGTACCAGTTGCCCAGGAGGTCCTTGATTCCCGGAGGCTCGTTATGCAAGGTGTCTCTACTCTTCTCAAAATGGTACCAGTTTTGGCCTGCAAGTTCTGTCCAGAAGTATATATAGGTGAGAAAGGCCACTTAATTCAGACTTGTTGTGGCTTCAAACGTCGTGGCAAAAATCGAGTTCATGAATGGATAGTTGGTGGTTTGAAAGATGTGCTTGTTCCAGTAGAGGCATTTCACCTCAAGCACATGTTCCAGGATGTTATAAAACACCATCAGAGGTTTGACTTTGAACGTGTTCCTGCAGTTGTCGAGCTATGCTGGCAAGCAGGGGCAAATGATGGAAATTACTTAAATTGGAACTCTGAAAATGATTGTGTTGGCGTTGATGGAGCTGAGTCTTTGTCATCTGATGAACTGATTCTGGTCGCCAGTGGAACTTTGAGGGCATGGGAAATACTTAGAAGTGGCGTGGAGAAGTTGCTGATGGTTTATCCAGCGAAAGTCTGTAAACATTGTTCAGAAGTTCATGTTGGGCCATCTGGGCATAAGGCTAGGCTTTGTGGAATTTTTAAGTATGAGAGTTGGCAGGGAACCCATTTTTGGAGGAAGGCAAATGTAGATGATCTTGTACCTCCAAAGACTGTATGGCGGCGGCGTCCTCAGGATCCTCAAGTACTTTTGAATGAAGGGAGGGGATTTTATGGGCATGCTCCGGGAGTAGTAGAACTATGCACACAGGCAGGTGCCATTGCACCTCCGAAGTATCACTGCATGATGAAACTGCAGGGTGTAAGTACCATACTTGGAGATCAAAGGTTGCTCCACCCGAATGATGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

334

Amino Acids

37.73

Weight (kDa)

9.26

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	27 - 165	7.4e-40	APO RNA-binding
APO_RNA-bind	PF05634	189 - 317	5.7e-20	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21740
fragaria_vesca	FvH4_6g43470 FvH4_6g43470
malus_domestica	MD01G1026000.v1.1 MD09G1106100.v1.1 MD09G1106200.v1.1 MD12G1177800.v1.1 MD12G1178000.v1.1 MD17G1094000.v1.1
prunus_persica	Prupe.3G219400_v2.0.a1 Prupe.3G219400_v2.0.a1 Prupe.8G006000_v2.0.a1
pyrus_communis	pycom01g05430 pycom09g02880 pycom09g04290 pycom12g16820 pycom17g09080
rosa_chinensis	RchiOBHm_Chr2g0159941 RchiOBHm_Chr5g0074711
rosa_laevigata	RLG00000021186 RLG00000022621 RLG00000036499
rosa_multiflora	Rmu_sc0000909.1_g000025 Rmu_sc0002508.1_g000037 Rmu_sc0012797.1_g000002 Rmu_sc0019386.1_g000001 Rmu_sc0029076.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006850 Rroxscaffold_2G00090140
rosa_rugosa	Rorug02G0479200 Rorug02G0479200 Rorug02G0479300
rosa_samantha	Rh2AG545900 Rh2BG559200 Rh2CG529300 Rh2DG567900 Rh3BG356500 Rh5AG490900 Rh5BG512200 Rh5CG535900 Rh5DG524600
rosa_wichuraiana	Rw2G045150 Rw3G028060 Rw5G045480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AarI	CACCTGC	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	890
Acc65I	GGTACC	2 cut(s)	163, 235
AccB1I	GGYRCC	3 cut(s)	163, 235, 902
AciI	CCGC	2 cut(s)	808, 811
AclWI	GGATC	3 cut(s)	24, 818, 831
AcsI	RAATTY	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	5 cut(s)	165, 237, 789, 834, 955
AfiI	CCNNNNNNNGG	1 cut(s)	759
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	2 cut(s)	405, 451
AgsI	TTSAA	6 cut(s)	40, 116, 316, 364, 449, 841
AjnI	CCWGG	2 cut(s)	174, 411
AjuI	GAANNNNNNNTTGG	6 cut(s)	336, 368, 672, 704, 742, 774
AluBI	AGCT	5 cut(s)	78, 100, 137, 472, 551
AluI	AGCT	5 cut(s)	78, 100, 137, 472, 551
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	3 cut(s)	24, 818, 831
AoxI	GGCC	3 cut(s)	246, 286, 692
ApoI	RAATTY	1 cut(s)	723
Asp700I	GAANNNNTTC	2 cut(s)	453, 576
Asp718I	GGTACC	2 cut(s)	163, 235
AspS9I	GGNCC	2 cut(s)	181, 692
AsuC2I	CCSGG	2 cut(s)	193, 873
AsuHPI	GGTGA	2 cut(s)	290, 386
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	819
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	3 cut(s)	163, 235, 902
BccI	CCATC	6 cut(s)	79, 438, 491, 539, 637, 703
BciT130I	CCWGG	2 cut(s)	176, 413
BcnI	CCSGG	2 cut(s)	193, 873
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	2 cut(s)	459, 941
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	890
BglI	GCCNNNNNGGC	1 cut(s)	700
BisI	GCNGC	2 cut(s)	809, 812
BlsI	GCNGC	2 cut(s)	810, 813
BmcAI	AGTACT	1 cut(s)	834
Bme1390I	CCNGG	4 cut(s)	176, 193, 413, 873
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	181, 692
BmiI	GGNNCC	5 cut(s)	165, 237, 751, 825, 904
BmrFI	CCNGG	4 cut(s)	176, 193, 413, 873
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	982
BmuI	ACTGGG	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	383, 813
BpuMI	CCSGG	2 cut(s)	193, 873
BsaHI	GRCGYC	1 cut(s)	814
BsaJI	CCNNGG	2 cut(s)	159, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse118I	RCCGGY	1 cut(s)	995
Bse1I	ACTGG	5 cut(s)	149, 167, 239, 380, 588
Bse21I	CCTNAGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	906
BseBI	CCWGG	2 cut(s)	176, 413
BseDI	CCNNGG	2 cut(s)	159, 174
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	2 cut(s)	543, 833
BseNI	ACTGG	5 cut(s)	149, 167, 239, 380, 588
BshFI	GGCC	3 cut(s)	248, 288, 694
BshNI	GGYRCC	3 cut(s)	163, 235, 902
BsiSI	CCGG	3 cut(s)	193, 872, 996
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	248, 288, 694
Bsp143I	GATC	4 cut(s)	29, 781, 823, 967
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	808, 811
BspANI	GGCC	3 cut(s)	248, 288, 694
BspCNI	CTCAG	2 cut(s)	544, 832
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	5 cut(s)	165, 237, 751, 825, 904
BspMAI	CTGCAG	2 cut(s)	463, 945
BspMI	ACCTGC	1 cut(s)	890
BspPI	GGATC	3 cut(s)	24, 818, 831
BspT107I	GGYRCC	3 cut(s)	163, 235, 902
BspTI	CTTAAG	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	995
BsrI	ACTGG	5 cut(s)	149, 167, 239, 380, 588
BssAI	RCCGGY	1 cut(s)	995
BssECI	CCNNGG	2 cut(s)	159, 174
BssMI	GATC	4 cut(s)	29, 781, 823, 967
BssNI	GRCGYC	1 cut(s)	814
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	176, 413
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	814
BstAFI	CTTAAG	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	250, 479, 483, 867
BstDEI	CTNAG	4 cut(s)	8, 552, 617, 819
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	32, 784, 826, 970
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	4 cut(s)	29, 781, 823, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 478, 700
BstNI	CCWGG	2 cut(s)	176, 413
BstNSI	RCATGY	2 cut(s)	409, 869
BstSCI	CCNGG	4 cut(s)	174, 191, 411, 871
BstSFI	CTRYAG	2 cut(s)	459, 941
BstX2I	RGATCY	2 cut(s)	29, 823
BstYI	RGATCY	2 cut(s)	29, 823
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	3 cut(s)	248, 288, 694
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	4 cut(s)	5, 156, 595, 925
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	4 cut(s)	250, 479, 483, 867
CciI	TCATGA	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	2 cut(s)	181, 692
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	5 cut(s)	164, 236, 788, 833, 954
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	7 cut(s)	160, 341, 406, 606, 686, 866, 931
CviQI	GTAC	5 cut(s)	164, 236, 788, 833, 954
DdeI	CTNAG	4 cut(s)	8, 552, 617, 819
DpnI	GATC	4 cut(s)	31, 783, 825, 969
DpnII	GATC	4 cut(s)	29, 781, 823, 967
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	174, 411
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	7 cut(s)	163, 344, 409, 609, 689, 869, 934
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 357, 389
FatI	CATG	7 cut(s)	159, 340, 405, 605, 685, 865, 930
Fnu4HI	GCNGC	2 cut(s)	809, 812
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	809, 812
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	2 cut(s)	809, 812
HaeIII	GGCC	3 cut(s)	248, 288, 694
HapII	CCGG	3 cut(s)	193, 872, 996
HgaI	GACGC	1 cut(s)	803
Hin1I	GRCGYC	1 cut(s)	814
Hin1II	CATG	7 cut(s)	163, 344, 409, 609, 689, 869, 934
HinfI	GANTC	5 cut(s)	112, 123, 188, 554, 577
HpaII	CCGG	3 cut(s)	193, 872, 996
HphI	GGTGA	2 cut(s)	290, 386
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	6 cut(s)	300, 435, 523, 568, 679, 918
Hpy188III	TCNNGA	3 cut(s)	263, 341, 821
Hpy8I	GTNNAC	1 cut(s)	668
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	2 cut(s)	760, 839
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	2 cut(s)	319, 451
HpyCH4V	TGCA	8 cut(s)	65, 208, 252, 461, 891, 911, 930, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 478, 700
HpyF3I	CTNAG	4 cut(s)	8, 552, 617, 819
HpySE526I	ACGT	2 cut(s)	319, 451
Hsp92I	GRCGYC	1 cut(s)	814
Hsp92II	CATG	7 cut(s)	163, 344, 409, 609, 689, 869, 934
KpnI	GGTACC	2 cut(s)	167, 239
Kzo9I	GATC	4 cut(s)	29, 781, 823, 967
LmnI	GCTCC	3 cut(s)	548, 874, 984
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	319, 451
MalI	GATC	4 cut(s)	31, 783, 825, 969
MboI	GATC	4 cut(s)	29, 781, 823, 967
MboII	GAAGA	3 cut(s)	25, 94, 215
MflI	RGATCY	2 cut(s)	29, 823
MluCI	AATT	7 cut(s)	17, 34, 48, 294, 502, 511, 723
MlyI	GAGTC	1 cut(s)	563
MroXI	GAANNNNTTC	2 cut(s)	453, 576
MseI	TTAA	4 cut(s)	92, 293, 509, 729
MslI	CAYNNNNRTG	1 cut(s)	987
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	3 cut(s)	193, 872, 996
MspR9I	CCNGG	4 cut(s)	176, 193, 413, 873
MvaI	CCWGG	2 cut(s)	176, 413
MwoI	GCNNNNNNNGC	3 cut(s)	205, 478, 700
NciI	CCSGG	2 cut(s)	193, 873
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	29, 781, 823, 967
NlaIII	CATG	7 cut(s)	163, 344, 409, 609, 689, 869, 934
NlaIV	GGNNCC	5 cut(s)	165, 237, 751, 825, 904
NspI	RCATGY	2 cut(s)	409, 869
PaeI	GCATGC	1 cut(s)	869
PagI	TCATGA	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	890
PciI	ACATGT	1 cut(s)	405
PdmI	GAANNNNTTC	2 cut(s)	453, 576
PfeI	GAWTC	4 cut(s)	112, 123, 188, 577
PfoI	TCCNGGA	3 cut(s)	191, 411, 871
PkrI	GCNGC	2 cut(s)	810, 813
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	174, 411
PspGI	CCWGG	2 cut(s)	174, 411
PspN4I	GGNNCC	5 cut(s)	165, 237, 751, 825, 904
PspPI	GGNCC	2 cut(s)	181, 692
PspPPI	RGGWCCY	1 cut(s)	181
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PstI	CTGCAG	2 cut(s)	463, 945
PsuI	RGATCY	2 cut(s)	29, 823
RsaI	GTAC	5 cut(s)	165, 237, 789, 834, 955
RsaNI	GTAC	5 cut(s)	164, 236, 788, 833, 954
RseI	CAYNNNNRTG	1 cut(s)	987
SaqAI	TTAA	4 cut(s)	92, 293, 509, 729
SatI	GCNGC	2 cut(s)	809, 812
Sau3AI	GATC	4 cut(s)	29, 781, 823, 967
Sau96I	GGNCC	2 cut(s)	181, 692
ScaI	AGTACT	1 cut(s)	834
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	4 cut(s)	176, 193, 413, 873
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	2 cut(s)	459, 941
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	987
SmlI	CTYRAG	3 cut(s)	91, 398, 828
SmoI	CTYRAG	3 cut(s)	91, 398, 828
SphI	GCATGC	1 cut(s)	869
Sse9I	AATT	7 cut(s)	17, 34, 48, 294, 502, 511, 723
SsiI	CCGC	2 cut(s)	808, 811
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	4 cut(s)	174, 191, 411, 871
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	2 cut(s)	322, 454
TaqI	TCGA	3 cut(s)	80, 334, 468
TasI	AATT	7 cut(s)	17, 34, 48, 294, 502, 511, 723
TatI	WGTACW	1 cut(s)	832
TauI	GCSGC	2 cut(s)	811, 814
TfiI	GAWTC	4 cut(s)	112, 123, 188, 577
Tru1I	TTAA	4 cut(s)	92, 293, 509, 729
Tru9I	TTAA	4 cut(s)	92, 293, 509, 729
TscAI	CASTG	4 cut(s)	12, 156, 595, 932
TspDTI	ATGAA	6 cut(s)	329, 357, 585, 674, 858, 950
TspRI	CASTG	4 cut(s)	12, 156, 595, 932
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	2 cut(s)	409, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XmnI	GAANNNNTTC	2 cut(s)	453, 576
XspI	CTAG	1 cut(s)	711
ZrmI	AGTACT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.