Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7715348 .. 7716387

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTACTATTCATCGCCGACATGCTTCGTTTTGATCACTATATTTGCCGTGGTGGTAACACAACTGATCTTTATGCGCACCGTTTCGTCCTTGAACATGACCAATGCCTATCTGAACCACAAATGCTTAGCCAATCAAGGGAAATACAAGCCGGGAAGTTGGTATGAGAAAAAACTCCAAAGTATTATAGTCTCTATCGGTAGCGGTGATGGTTTTACCCTTGGTTACGACATGATGGCCCTTGGTAAGGATTCTGATTACGTAGCCGTCACCAACCAGTGCCGTGGCGACTCCAACGGGTCCATGTGCCGCTCCTGCTTTGCCACCGCCATCGCAAGGGGGGCAATAATATGGTACGACCAATGTACTCTCCAGATTTCTCCGTTCGATACTCAAGGGAAGTTCGACAAAGATAATGATTTCTGTATGTCCAACAAGAAGAAAATGAACGTAGATTCGTTTGGAGAGAAGTGGATGACATTCCTCGACAATTTGGTAGGTATAGCCCTCAAAGATCATTTGTATGCCGCTGGGGATACAAGGTTCGGGACAAAGAAGTTGTACGGGATGGTGCAGTGTAGGCTTGACATATATAATAATAGTTGTCGAGAGTGTGTTGGACACATAGCCGTAAAATTTCAAGATTGCTGGCATGGTAAACAAGGAGCTAGAGTGTTGGGTAGTGGTTGTAACTTTAGGTATGAGCTTTACCCTTTTGTTGGTAGTAACAAGCGCGGTCGTAATTTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

250

Amino Acids

28.11

Weight (kDa)

8.93

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 135	7e-17	Salt stress response/antifungal
Stress-antifung	PF01657	150 - 244	1.8e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	1 cut(s)	735
AciI	CCGC	5 cut(s)	204, 310, 327, 528, 735
AcsI	RAATTY	1 cut(s)	635
AfaI	GTAC	4 cut(s)	5, 356, 367, 563
AfiI	CCNNNNNNNGG	4 cut(s)	138, 247, 336, 719
AgsI	TTSAA	2 cut(s)	94, 641
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	2 cut(s)	668, 706
AluI	AGCT	2 cut(s)	668, 706
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	78, 735
AspS9I	GGNCC	2 cut(s)	238, 300
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	218, 262
AvaII	GGWCC	1 cut(s)	300
BccI	CCATC	4 cut(s)	203, 229, 338, 562
BceAI	ACGGC	4 cut(s)	32, 251, 267, 614
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	310, 528
BlpI	GCTNAGC	1 cut(s)	127
BlsI	GCNGC	2 cut(s)	311, 529
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	238, 300
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	48, 220, 241, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 247, 336, 719
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	4 cut(s)	48, 220, 241, 283
BseGI	GGATG	2 cut(s)	480, 573
BseLI	CCNNNNNNNGG	4 cut(s)	138, 247, 336, 719
BseNI	ACTGG	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	735
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	739
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	4 cut(s)	138, 247, 336, 719
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	33, 66, 514
Bsp1720I	GCTNAGC	1 cut(s)	127
BspACI	CCGC	5 cut(s)	204, 310, 327, 528, 735
BspANI	GGCC	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	4 cut(s)	48, 220, 241, 283
BssMI	GATC	3 cut(s)	33, 66, 514
BssT1I	CCWWGG	2 cut(s)	220, 241
Bst4CI	ACNGT	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	48, 283
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	480, 573
BstFNI	CGCG	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	78, 735
BstKTI	GATC	3 cut(s)	36, 69, 517
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	33, 66, 514
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 341, 580
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	151
BstSNI	TACGTA	1 cut(s)	262
BstUI	CGCG	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	2 cut(s)	48, 283
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	480, 573
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	284, 581
Cac8I	GCNNGC	1 cut(s)	650
CfoI	GCGC	2 cut(s)	78, 735
Cfr13I	GGNCC	2 cut(s)	238, 300
Csp6I	GTAC	4 cut(s)	4, 355, 366, 562
CviAII	CATG	5 cut(s)	21, 97, 232, 304, 653
CviJI	RGCY	9 cut(s)	131, 151, 239, 266, 506, 583, 629, 668, 706
CviKI_1	RGCY	9 cut(s)	131, 151, 239, 266, 506, 583, 629, 668, 706
CviQI	GTAC	4 cut(s)	4, 355, 366, 562
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	3 cut(s)	35, 68, 516
DpnII	GATC	3 cut(s)	33, 66, 514
DraI	TTTAAA	1 cut(s)	747
Eco105I	TACGTA	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	220, 241
Eco47I	GGWCC	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	220, 241
ErhI	CCWWGG	2 cut(s)	220, 241
FaeI	CATG	5 cut(s)	24, 100, 235, 307, 656
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	5 cut(s)	20, 96, 231, 303, 652
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	310, 528
FokI	GGATG	2 cut(s)	487, 580
Fsp4HI	GCNGC	2 cut(s)	310, 528
FspAI	RTGCGCAY	1 cut(s)	77
FspBI	CTAG	1 cut(s)	669
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	2 cut(s)	77, 734
GluI	GCNGC	2 cut(s)	310, 528
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	2 cut(s)	78, 735
Hin1II	CATG	5 cut(s)	24, 100, 235, 307, 656
Hin6I	GCGC	2 cut(s)	76, 733
HinP1I	GCGC	2 cut(s)	76, 733
HinfI	GANTC	3 cut(s)	251, 290, 455
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	218, 262
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	2 cut(s)	114, 256
Hpy188III	TCNNGA	4 cut(s)	373, 547, 608, 641
Hpy8I	GTNNAC	1 cut(s)	659
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	261, 450
HpyCH4V	TGCA	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 341, 580
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	2 cut(s)	261, 450
Hsp92II	CATG	5 cut(s)	24, 100, 235, 307, 656
HspAI	GCGC	2 cut(s)	76, 733
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	33, 66, 514
LmnI	GCTCC	2 cut(s)	317, 665
LpnPI	CCDG	6 cut(s)	165, 290, 328, 386, 516, 634
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	261, 450
MaeIII	GTNAC	5 cut(s)	55, 224, 268, 689, 725
MalI	GATC	3 cut(s)	35, 68, 516
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	3 cut(s)	33, 66, 514
MboII	GAAGA	1 cut(s)	451
MluCI	AATT	3 cut(s)	490, 635, 742
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	3 cut(s)	318, 456, 598
MnlI	CCTC	2 cut(s)	494, 518
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	315, 341, 580
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	33, 66, 514
NlaIII	CATG	5 cut(s)	24, 100, 235, 307, 656
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	77
NspI	RCATGY	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	251, 455
PkrI	GCNGC	2 cut(s)	311, 529
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	238, 300
RsaI	GTAC	4 cut(s)	5, 356, 367, 563
RsaNI	GTAC	4 cut(s)	4, 355, 366, 562
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	2 cut(s)	310, 528
Sau3AI	GATC	3 cut(s)	33, 66, 514
Sau96I	GGNCC	2 cut(s)	238, 300
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	7 cut(s)	264, 453, 502, 545, 670, 701, 708
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SnaBI	TACGTA	1 cut(s)	262
Sse9I	AATT	3 cut(s)	490, 635, 742
SsiI	CCGC	5 cut(s)	204, 310, 327, 528, 735
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	220, 241
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	264, 453
TaqI	TCGA	4 cut(s)	387, 405, 486, 607
TasI	AATT	3 cut(s)	490, 635, 742
TatI	WGTACW	2 cut(s)	3, 365
TauI	GCSGC	2 cut(s)	312, 530
TfiI	GAWTC	2 cut(s)	251, 455
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	2 cut(s)	284, 581
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	284, 581
VpaK11BI	GGWCC	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.