Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7723242 .. 7724361

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGTCCCTATTGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAACCTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGAAGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGATTCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTCTCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTCACGGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTTGTGGAGTTTTCTTCGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATGCCTAGCGCGAAGAACCTGATCGGCAATTCAATCTCTCTTGAAGAAAGGTTGCATCTCCTCAACAATCTTACAAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATAAAAAAACCAGTACTGTATGCGGCGGGGGAGAAGAGACTCGGGACGAAAAGTCTATACGGAATGGTGCAATGTTCGGCTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAGTGCATTTTCAAGAGTGCTGGGAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTAACTTTAGGTATGAGCTTTACCCTTTTATTAGCCCCAAGGGTTCTTACTATACCAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

278

Amino Acids

31.71

Weight (kDa)

9.06

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 143	4.2e-19	Salt stress response/antifungal
Stress-antifung	PF01657	203 - 264	1.1e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	485
AciI	CCGC	2 cut(s)	611, 614
AclI	AACGTT	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	345
AfaI	GTAC	5 cut(s)	81, 170, 238, 404, 603
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	507, 518, 725
AhdI	GACNNNNNGTC	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	75, 157
AluBI	AGCT	4 cut(s)	201, 358, 771, 790
AluI	AGCT	4 cut(s)	201, 358, 771, 790
Alw26I	GTCTC	2 cut(s)	286, 619
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	3 cut(s)	255, 317, 345
ApaI	GGGCCC	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsiGI	ACCGGT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	317, 318
AsuHPI	GGTGA	3 cut(s)	70, 113, 280
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	312
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	3 cut(s)	285, 360, 542
BciT130I	CCWGG	2 cut(s)	77, 159
BcoDI	GTCTC	2 cut(s)	286, 619
BfaI	CTAG	2 cut(s)	38, 480
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	2 cut(s)	77, 159
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	317, 318
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	77, 159
BmsI	GCATC	1 cut(s)	538
BoxI	GACNNNNGTC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	810
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 741, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	2 cut(s)	239, 347
Bse1I	ACTGG	3 cut(s)	295, 328, 599
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	77, 159
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	665
BseNI	ACTGG	3 cut(s)	295, 328, 599
BseRI	GAGGAG	2 cut(s)	62, 524
BseSI	GKGCMC	1 cut(s)	321
BseX3I	CGGCCG	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	257, 319, 347
BshTI	ACCGGT	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	240, 348
BslFI	GGGAC	2 cut(s)	26, 646
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	286, 619
BsmFI	GGGAC	2 cut(s)	26, 646
BsnI	GGCC	3 cut(s)	257, 319, 347
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	206
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	450, 495
BspACI	CCGC	2 cut(s)	611, 614
BspANI	GGCC	3 cut(s)	257, 319, 347
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	239, 347
BsrI	ACTGG	3 cut(s)	295, 328, 599
BssAI	RCCGGY	2 cut(s)	239, 347
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	2 cut(s)	450, 495
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	77, 159
Bst4CI	ACNGT	2 cut(s)	263, 606
Bst6I	CTCTTC	1 cut(s)	617
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	453, 498
BstMAI	GTCTC	2 cut(s)	286, 619
BstMBI	GATC	2 cut(s)	450, 495
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	2 cut(s)	77, 159
BstPAI	GACNNNNGTC	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	75, 157
BstSLI	GKGCMC	1 cut(s)	321
BstSNI	TACGTA	1 cut(s)	83
BstUI	CGCG	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	257, 319, 347
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	2 cut(s)	239, 347
Cfr13I	GGNCC	2 cut(s)	317, 318
Csp6I	GTAC	5 cut(s)	80, 169, 237, 403, 602
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	5 cut(s)	80, 169, 237, 403, 602
DpnI	GATC	2 cut(s)	452, 497
DpnII	GATC	2 cut(s)	450, 495
DriI	GACNNNNNGTC	1 cut(s)	639
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	617
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	617
EclXI	CGGCCG	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	810
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	190
Eco52I	CGGCCG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	75, 157
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	1 cut(s)	253
FaqI	GGGAC	2 cut(s)	26, 646
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	2 cut(s)	38, 480
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	612
GsaI	CCCAGC	1 cut(s)	736
HaeIII	GGCC	3 cut(s)	257, 319, 347
HapII	CCGG	2 cut(s)	240, 348
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	3 cut(s)	221, 308, 627
HpaII	CCGG	2 cut(s)	240, 348
HphI	GGTGA	3 cut(s)	70, 113, 280
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	4 cut(s)	515, 562, 631, 725
Hpy8I	GTNNAC	1 cut(s)	743
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	247, 578
HpyCH4III	ACNGT	2 cut(s)	263, 606
HpyCH4IV	ACGT	2 cut(s)	82, 87
HpyCH4V	TGCA	3 cut(s)	529, 658, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpySE526I	ACGT	2 cut(s)	82, 87
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	450, 495
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	38, 480
MaeII	ACGT	2 cut(s)	82, 87
MaeIII	GTNAC	6 cut(s)	58, 83, 242, 340, 559, 773
MalI	GATC	2 cut(s)	452, 497
MboI	GATC	2 cut(s)	450, 495
MboII	GAAGA	7 cut(s)	84, 110, 353, 420, 499, 530, 634
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	3 cut(s)	109, 454, 502
MlyI	GAGTC	2 cut(s)	302, 621
MnlI	CCTC	4 cut(s)	83, 191, 382, 545
MspI	CCGG	2 cut(s)	240, 348
MspR9I	CCNGG	2 cut(s)	77, 159
MvaI	CCWGG	2 cut(s)	77, 159
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	2 cut(s)	450, 495
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	3 cut(s)	58, 340, 559
NspV	TTCGAA	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	302, 621
PpsI	GAGTC	2 cut(s)	302, 621
Ppu21I	YACGTR	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	75, 157
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	2 cut(s)	75, 157
PspN4I	GGNNCC	1 cut(s)	319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	317, 318
RsaI	GTAC	5 cut(s)	81, 170, 238, 404, 603
RsaNI	GTAC	5 cut(s)	80, 169, 237, 403, 602
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	2 cut(s)	450, 495
Sau96I	GGNCC	2 cut(s)	317, 318
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	2 cut(s)	302, 621
ScrFI	CCNGG	2 cut(s)	77, 159
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	206
SnaBI	TACGTA	1 cut(s)	83
Sse9I	AATT	3 cut(s)	109, 454, 502
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	611, 614
SspMI	CTAG	2 cut(s)	38, 480
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	75, 157
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	2 cut(s)	263, 606
TaiI	ACGT	2 cut(s)	85, 90
TaqI	TCGA	3 cut(s)	183, 206, 306
TasI	AATT	3 cut(s)	109, 454, 502
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	3 cut(s)	58, 340, 559
Tsp45I	GTSAC	3 cut(s)	58, 340, 559
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	1 cut(s)	302
XspI	CTAG	2 cut(s)	38, 480
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.