Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7745143 .. 7746200

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATTTCAAAATTTGGATCGGTCCATATCTTGGCTGTGGTAGCCATACAACTCCTAATTATACCAAGCGTTTCGTCCCTTAACCTTACAAATGCGTATTTGCACCACAAATGTAACAACACCGAAGGAAAATATAGCCACGGGAGTGCGTTTGAGAAATATATCAACTTAGCTCTCCGTGCCATCGATTCAGACAATTATCTCAATGGTTTTGCCTACATCGAGAGAGGTGAGGATCCCAATAAAGTCTTCGTCATGTACCAATGTCGCGGCGACTCCTACGGGTCTAAGTGCAAATCCTGCATAAGCGCTGCCATCTCTGGGATTGATTACGAGAACGATTTCTATTTGTCCAACCCGAACGACGTGAACGATAAGGAGTTGTTCAACAAGGAGACCTCGGCTCTCTTGGAGGAGCTAACAAATAAAGCCACTGATAAAAATAACATGATAGGCAATAAATTTGTGCTGTACGCGGCAGGGGATAAGAGAATTGGAACGAAGAATGTGTATGCAATGGTGCAATGTACGAAAGACTTAGTGACTACAACTTCTGCTGCGTGTTTCGAATGGATTTTCAAGATGTTTTCAAAGTGCTGTGAAGGAAAGCAAGGAGGGAGAGTTTTGGGTACGAGCTGTAACTTTAGGTATGAGTTATATCCCTTTCTTAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

8.0

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	37 - 107	3.5e-13	Salt stress response/antifungal
Stress-antifung	PF01657	123 - 219	2.7e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	270, 476
AciI	CCGC	2 cut(s)	270, 476
AclWI	GGATC	3 cut(s)	25, 230, 243
AcsI	RAATTY	2 cut(s)	11, 461
AfaI	GTAC	4 cut(s)	260, 473, 529, 631
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	31, 321
AgsI	TTSAA	4 cut(s)	9, 388, 580, 591
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	173, 418, 636
AluI	AGCT	3 cut(s)	173, 418, 636
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	25, 230, 243
Aor51HI	AGCGCT	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	311, 557
ApoI	RAATTY	2 cut(s)	11, 461
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	298, 544
BccI	CCATC	2 cut(s)	191, 323
BcoDI	GTCTC	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	4 cut(s)	271, 312, 477, 558
BlsI	GCNGC	4 cut(s)	272, 313, 478, 559
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	139, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 321
Bse3DI	GCAATG	2 cut(s)	522, 530
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	139, 399
BseLI	CCNNNNNNNGG	2 cut(s)	31, 321
BseMI	GCAATG	2 cut(s)	522, 530
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	298, 544
Bsh1236I	CGCG	2 cut(s)	270, 476
BshVI	ATCGAT	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	31, 321
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	17, 235
BspACI	CCGC	2 cut(s)	270, 476
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	270, 476
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	3 cut(s)	25, 230, 243
BspT104I	TTCGAA	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	522, 530
BssECI	CCNNGG	2 cut(s)	139, 399
BssMI	GATC	2 cut(s)	17, 235
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	567
BstDEI	CTNAG	4 cut(s)	169, 288, 538, 668
BstDSI	CCRYGG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	270, 476
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	2 cut(s)	20, 238
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	17, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 179, 300
BstUI	CGCG	2 cut(s)	270, 476
BstV1I	GCAGC	2 cut(s)	298, 544
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	432
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	186
Csp6I	GTAC	4 cut(s)	259, 472, 528, 630
CviAII	CATG	2 cut(s)	256, 448
CviJI	RGCY	8 cut(s)	35, 44, 138, 173, 404, 418, 431, 636
CviKI_1	RGCY	8 cut(s)	35, 44, 138, 173, 404, 418, 431, 636
CviQI	GTAC	4 cut(s)	259, 472, 528, 630
DdeI	CTNAG	4 cut(s)	169, 288, 538, 668
DpnI	GATC	2 cut(s)	19, 237
DpnII	GATC	2 cut(s)	17, 235
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	310
FaeI	CATG	2 cut(s)	259, 451
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	255, 447
Fnu4HI	GCNGC	4 cut(s)	271, 312, 477, 558
Fsp4HI	GCNGC	4 cut(s)	271, 312, 477, 558
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	271, 312, 477, 558
HaeII	RGCGCY	1 cut(s)	312
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	259, 451
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	188, 275
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	223, 580
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	119, 596
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	5 cut(s)	103, 294, 303, 515, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 179, 300
HpyF3I	CTNAG	4 cut(s)	169, 288, 538, 668
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	259, 451
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	17, 235
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	3 cut(s)	306, 313, 465
Lsp1109I	GCAGC	2 cut(s)	298, 544
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	113, 541, 638
MalI	GATC	2 cut(s)	19, 237
MboI	GATC	2 cut(s)	17, 235
MboII	GAAGA	2 cut(s)	241, 514
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	6 cut(s)	11, 57, 196, 461, 492, 673
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	221, 226, 406, 409, 608
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	81, 676
MslI	CAYNNNNRTG	1 cut(s)	144
MvnI	CGCG	2 cut(s)	270, 476
MwoI	GCNNNNNNNGC	3 cut(s)	41, 179, 300
NdeII	GATC	2 cut(s)	17, 235
NlaIII	CATG	2 cut(s)	259, 451
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	567
OliI	CACNNNNGTG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	272, 313, 478, 559
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	4 cut(s)	260, 473, 529, 631
RsaNI	GTAC	4 cut(s)	259, 472, 528, 630
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	81, 676
SatI	GCNGC	4 cut(s)	271, 312, 477, 558
Sau3AI	GATC	2 cut(s)	17, 235
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	269
SetI	ASST	8 cut(s)	87, 175, 232, 369, 401, 420, 638, 650
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	6 cut(s)	11, 57, 196, 461, 492, 673
SsiI	CCGC	2 cut(s)	270, 476
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	186, 222, 567
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	6 cut(s)	11, 57, 196, 461, 492, 673
TauI	GCSGC	2 cut(s)	273, 479
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	81, 676
Tru9I	TTAA	2 cut(s)	81, 676
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	311, 557
Tsp45I	GTSAC	1 cut(s)	541
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	11, 461
XmnI	GAANNNNTTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.