Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

11037301 .. 11038746

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTTCAAATATATTGGCCATGGTGGCCATGCAACTCCTCCTTATACGCATAGTTTCTTCCCAAAACGTTACGAATGAGTATTTGAACCACCAATGCAACAACACACAAGGGACATACACGCGGGGTAGTACGTTTGAGAAGAATCTCAACCAAGTCATCCGTAACATCTCTCACCTCCATCTTCGCTACGGTTACACCTACAACTCCAATGTTGAGGCTTACGAAGTTAGTAAAGATCCCAACATTGTCTTCGTTTTGCTCCAGTGTCGTGGTGACTCTTACGGGTCCAAGTGCCACTCCTGCCTCCACACAGCCTTCTCTGGGCTTCGTGAGAGATGTCGGGGAAACAAAGGAGCAATAATATGGTACGACCAATGTGTTTTGGAGATTTCTTCCGTGAATACCAAGGGGAGGATTCGTTACGATAGTTTTTTCAATATGACCAACGTGAAGAATGTGAGCAGCAATGCGGAGCAGTTTAAAAATAAAAGGAAGGATCTCTTCCACAAGCTATTGTTGGGAGCCACCAAGGATGTAAGCGACAGCAATGATGCGTACGCAGTGGGGGAGACGAGGATAGGAAGAAATAAGATGTATGCAATGATGCAGTGTGCACTAGACTTAACGACGAATGGATGCTATGTGTGTCTAGAATGGATTATAGGCAGGTATGATAGCTTCTACTTTGACCGTAGACAAGGAACGAGAGTTTTGAGTAGGAGTTGTAGCTTAAGATATGAGCTTTACCCTTTTCTTAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

255

Amino Acids

29.44

Weight (kDa)

9.27

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	32 - 132	1e-21	Salt stress response/antifungal
Stress-antifung	PF01657	152 - 249	2.2e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	1 cut(s)	124
AciI	CCGC	2 cut(s)	124, 473
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	2 cut(s)	233, 507
AcoI	YGGCCR	2 cut(s)	18, 27
AfaI	GTAC	3 cut(s)	133, 371, 560
AfiI	CCNNNNNNNGG	2 cut(s)	324, 414
AflII	CTTAAG	1 cut(s)	733
AgsI	TTSAA	3 cut(s)	9, 88, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	514, 681, 732, 745
AluI	AGCT	4 cut(s)	514, 681, 732, 745
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	566
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	233, 507
AoxI	GGCC	2 cut(s)	18, 27
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	167, 287
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	2 cut(s)	20, 29
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	620, 653
BfrI	CTTAAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	660
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	289, 526
BmsI	GCATC	3 cut(s)	544, 597, 629
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	21, 408, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 414
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	3 cut(s)	475, 556, 609
BseDI	CCNNGG	3 cut(s)	21, 408, 531
BseGI	GGATG	3 cut(s)	159, 541, 644
BseLI	CCNNNNNNNGG	2 cut(s)	324, 414
BseMI	GCAATG	3 cut(s)	475, 556, 609
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	20, 29
BsiHKAI	GWGCWC	1 cut(s)	619
BsiWI	CGTACG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	324, 414
BsmAI	GTCTC	1 cut(s)	566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	20, 29
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	238, 499
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	124, 473
BspANI	GGCC	2 cut(s)	20, 29
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	289, 526
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	2 cut(s)	233, 507
BspTI	CTTAAG	1 cut(s)	733
BsrDI	GCAATG	3 cut(s)	475, 556, 609
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	21, 408, 531
BssMI	GATC	2 cut(s)	238, 499
BssT1I	CCWWGG	3 cut(s)	21, 408, 531
Bst4CI	ACNGT	2 cut(s)	194, 695
Bst6I	CTCTTC	1 cut(s)	509
BstAFI	CTTAAG	1 cut(s)	733
BstDEI	CTNAG	1 cut(s)	758
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	159, 541, 644
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	241, 502
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	238, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 303
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	238, 499
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	2 cut(s)	238, 499
BsuRI	GGCC	2 cut(s)	20, 29
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	159, 541, 644
BtsI	GCAGTG	2 cut(s)	570, 617
BtsIMutI	CAGTG	3 cut(s)	272, 570, 617
BveI	ACCTGC	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	132, 370, 559
CviAII	CATG	2 cut(s)	22, 31
CviQI	GTAC	3 cut(s)	132, 370, 559
DdeI	CTNAG	1 cut(s)	758
DpnI	GATC	2 cut(s)	240, 501
DpnII	GATC	2 cut(s)	238, 499
DraI	TTTAAA	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	18, 27
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	3 cut(s)	21, 408, 531
Eco47I	GGWCC	1 cut(s)	288
EcoT14I	CCWWGG	3 cut(s)	21, 408, 531
ErhI	CCWWGG	3 cut(s)	21, 408, 531
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	2 cut(s)	25, 34
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	21, 30
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	3 cut(s)	146, 548, 651
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	2 cut(s)	620, 653
GluI	GCNGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	20, 29
Hin1II	CATG	2 cut(s)	25, 34
HinfI	GANTC	3 cut(s)	145, 278, 418
HphI	GGTGA	2 cut(s)	167, 287
Hpy166II	GTNNAC	2 cut(s)	617, 698
Hpy188III	TCNNGA	2 cut(s)	332, 653
Hpy8I	GTNNAC	2 cut(s)	617, 698
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	2 cut(s)	328, 490
HpyCH4III	ACNGT	2 cut(s)	194, 695
HpyCH4IV	ACGT	3 cut(s)	69, 134, 450
HpyCH4V	TGCA	5 cut(s)	34, 99, 602, 610, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 303
HpyF3I	CTNAG	1 cut(s)	758
HpySE526I	ACGT	3 cut(s)	69, 134, 450
Hsp92II	CATG	2 cut(s)	25, 34
Kzo9I	GATC	2 cut(s)	238, 499
LmnI	GCTCC	4 cut(s)	267, 356, 475, 524
LpnPI	CCDG	4 cut(s)	278, 309, 316, 655
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	3 cut(s)	544, 597, 629
MaeI	CTAG	2 cut(s)	620, 653
MaeII	ACGT	3 cut(s)	69, 134, 450
MaeIII	GTNAC	5 cut(s)	70, 164, 194, 275, 422
MalI	GATC	2 cut(s)	240, 501
MboI	GATC	2 cut(s)	238, 499
MboII	GAAGA	8 cut(s)	51, 154, 176, 244, 387, 466, 496, 597
MflI	RGATCY	2 cut(s)	238, 499
MhlI	GDGCHC	1 cut(s)	619
MlsI	TGGCCA	2 cut(s)	20, 29
MluNI	TGGCCA	2 cut(s)	20, 29
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	50, 188, 211, 317, 408, 570, 756
Mox20I	TGGCCA	2 cut(s)	20, 29
MscI	TGGCCA	2 cut(s)	20, 29
MseI	TTAA	3 cut(s)	483, 626, 734
Msp20I	TGGCCA	2 cut(s)	20, 29
MspCI	CTTAAG	1 cut(s)	733
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	26, 303
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	238, 499
NlaIII	CATG	2 cut(s)	25, 34
NlaIV	GGNNCC	2 cut(s)	289, 526
NmuCI	GTSAC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	145, 418
Pfl23II	CGTACG	1 cut(s)	558
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	69
PspLI	CGTACG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	289, 526
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	238, 499
RsaI	GTAC	3 cut(s)	133, 371, 560
RsaNI	GTAC	3 cut(s)	132, 370, 559
SaqAI	TTAA	3 cut(s)	483, 626, 734
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	238, 499
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	3 cut(s)	544, 597, 629
SfiI	GGCCNNNNNGGCC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SsiI	CCGC	2 cut(s)	124, 473
SspMI	CTAG	2 cut(s)	620, 653
StyI	CCWWGG	3 cut(s)	21, 408, 531
TaaI	ACNGT	2 cut(s)	194, 695
TaiI	ACGT	3 cut(s)	72, 137, 453
TfiI	GAWTC	2 cut(s)	145, 418
Tru1I	TTAA	3 cut(s)	483, 626, 734
Tru9I	TTAA	3 cut(s)	483, 626, 734
TscAI	CASTG	3 cut(s)	272, 570, 617
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	152, 388
TspRI	CASTG	3 cut(s)	272, 570, 617
Vha464I	CTTAAG	1 cut(s)	733
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	2 cut(s)	620, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.