Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

11094914 .. 11096521

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTACCCTTCATGTTCTCTTTTACAACGTCTCGTTTGGTTCCCTTTCTTAGCCTTGGTGGCCACACAACTCCTATTTATACGCAATGTTTCGTCCCTGAACCTGACCAATGAGTATCTGCATCACAAATGTCTCGTTAGTGAAGGGAAATATAAACCAGGAAGCAAGTACGAGTATATCCTTAACGATCACATCCGTTTTCTCGCAGCCGGAAATTTTCGCTCAGGTTCCATGCACATGACAAGTGGTCTAAAACCCAATGCTGTAACCATCCTCTACCAGTGCCGCGGTGACTCCTATAATTCTAAGTGCCGCTCTTGCTATGCTGCCGGCATCTCCGGGCTTCGTAGGCGATGTCCGAGAAACAAAGGTGGGATAATATGGTTCGATCAGTGTTTTGTTGAGATTACTTCAATCAGTGTCATCGACTTCAACATCTCAAAGATCAATTACGAGAACAATTTCCCCTTACACAACCCGAACAGGGTAAGTGGCGATATAAAGTCATTCAACAATGAGACAATGGCTCTCCTCAAAGAGTTGGCGTTGAAAGCAAATAATAAAGACAACATGGACAATGGCAAGATGGCACTGTACGCATCAGGGGAGAAGAGGGTCGGGACAAAGAAGGTGTACGCAATGGTTCAGTGTATGAGAGATCTAGTTAAGCCTAAGATGTGTAAGGAGTGTTTGGAAAGCATTATAAAGGAGTTTCCCGAGTGTTGCGACGGTAAACAAGGAGGGAGGATTTTGGGTACGAGCTGTGATTTTAGGTATGAACTTTACCCTTTTCTAAGGACTTCAGATTCAAAAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

273

Amino Acids

31.04

Weight (kDa)

9.21

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 136	3.3e-17	Salt stress response/antifungal
Stress-antifung	PF01657	168 - 261	1.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	315
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	286, 288, 313
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	5 cut(s)	5, 170, 596, 635, 757
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	5 cut(s)	414, 433, 511, 550, 810
AhdI	GACNNNNNGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	762
AluI	AGCT	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	35, 137, 512
Ama87I	CYCGRG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	206, 326
ApoI	RAATTY	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	218, 313
BccI	CCATC	2 cut(s)	278, 580
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	35, 137, 512
BfaI	CTAG	1 cut(s)	662
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	4 cut(s)	207, 286, 313, 327
BlsI	GCNGC	4 cut(s)	208, 287, 314, 328
Bme1390I	CCNGG	2 cut(s)	159, 340
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	716
BmiI	GGNNCC	2 cut(s)	41, 229
BmrFI	CCNGG	2 cut(s)	159, 340
BmsI	GCATC	3 cut(s)	130, 342, 608
Bpu10I	CCTNAGC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	54, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	2 cut(s)	91, 645
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	54, 286
BseGI	GGATG	2 cut(s)	192, 270
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	91, 645
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	218, 313
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	3 cut(s)	210, 330, 339
BslFI	GGGAC	2 cut(s)	79, 634
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	3 cut(s)	35, 137, 512
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	79, 634
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	716
Bsp143I	GATC	4 cut(s)	187, 388, 444, 658
BspACI	CCGC	3 cut(s)	286, 288, 313
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	41, 229
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	2 cut(s)	91, 645
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	54, 286
BssMI	GATC	4 cut(s)	187, 388, 444, 658
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	594, 731, 817
Bst6I	CTCTTC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	5 cut(s)	49, 223, 306, 672, 794
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	192, 270
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	190, 391, 447, 661
BstMAI	GTCTC	3 cut(s)	35, 137, 512
BstMBI	GATC	4 cut(s)	187, 388, 444, 658
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 318, 349, 551, 596
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	157, 338
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	218, 313
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	192, 270
BtsIMutI	CAGTG	5 cut(s)	287, 398, 424, 590, 653
Cac8I	GCNNGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	329
Cfr42I	CCGCGG	1 cut(s)	289
Csp6I	GTAC	5 cut(s)	4, 169, 595, 634, 756
CviAII	CATG	4 cut(s)	12, 232, 238, 571
CviJI	RGCY	7 cut(s)	53, 62, 209, 343, 527, 670, 762
CviKI_1	RGCY	7 cut(s)	53, 62, 209, 343, 527, 670, 762
CviQI	GTAC	5 cut(s)	4, 169, 595, 634, 756
DdeI	CTNAG	5 cut(s)	49, 223, 306, 672, 794
DpnI	GATC	4 cut(s)	189, 390, 446, 660
DpnII	GATC	4 cut(s)	187, 388, 444, 658
DriI	GACNNNNNGTC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	605
Eam1105I	GACNNNNNGTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	4 cut(s)	15, 235, 241, 574
FaqI	GGGAC	2 cut(s)	79, 634
FatI	CATG	4 cut(s)	11, 231, 237, 570
Fnu4HI	GCNGC	4 cut(s)	207, 286, 313, 327
FokI	GGATG	2 cut(s)	179, 257
Fsp4HI	GCNGC	4 cut(s)	207, 286, 313, 327
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	4 cut(s)	207, 286, 313, 327
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	210, 330, 339
Hin1II	CATG	4 cut(s)	15, 235, 241, 574
HinfI	GANTC	2 cut(s)	293, 806
HpaII	CCGG	3 cut(s)	210, 330, 339
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	634, 734
Hpy188I	TCNGA	2 cut(s)	360, 805
Hpy188III	TCNNGA	2 cut(s)	619, 716
Hpy8I	GTNNAC	2 cut(s)	634, 734
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	3 cut(s)	18, 137, 622
HpyCH4III	ACNGT	3 cut(s)	594, 731, 817
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	121, 235
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 318, 349, 551, 596
HpyF3I	CTNAG	5 cut(s)	49, 223, 306, 672, 794
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	4 cut(s)	15, 235, 241, 574
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	187, 388, 444, 658
Lsp1109I	GCAGC	2 cut(s)	218, 313
LweI	GCATC	3 cut(s)	130, 342, 608
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	265, 290
MalI	GATC	4 cut(s)	189, 390, 446, 660
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	4 cut(s)	187, 388, 444, 658
MboII	GAAGA	1 cut(s)	622
MflI	RGATCY	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	4 cut(s)	214, 301, 448, 460
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	284, 542, 606, 734, 738
Mox20I	TGGCCA	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	183, 666
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	3 cut(s)	210, 330, 339
MspR9I	CCNGG	2 cut(s)	159, 340
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	59, 318, 349, 551, 596
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	4 cut(s)	187, 388, 444, 658
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	4 cut(s)	15, 235, 241, 574
NlaIV	GGNNCC	2 cut(s)	41, 229
NmuCI	GTSAC	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	4 cut(s)	208, 287, 314, 328
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	41, 229
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	5 cut(s)	5, 170, 596, 635, 757
RsaNI	GTAC	5 cut(s)	4, 169, 595, 634, 756
RseI	CAYNNNNRTG	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	183, 666
SatI	GCNGC	4 cut(s)	207, 286, 313, 327
Sau3AI	GATC	4 cut(s)	187, 388, 444, 658
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	159, 340
SetI	ASST	7 cut(s)	31, 105, 229, 373, 633, 764, 776
SfaNI	GCATC	3 cut(s)	130, 342, 608
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	214, 301, 448, 460
SsiI	CCGC	3 cut(s)	286, 288, 313
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	157, 338
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	594, 731, 817
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	387, 426
TasI	AATT	4 cut(s)	214, 301, 448, 460
TauI	GCSGC	2 cut(s)	288, 315
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	2 cut(s)	183, 666
Tru9I	TTAA	2 cut(s)	183, 666
TscAI	CASTG	5 cut(s)	287, 398, 424, 597, 653
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	206, 326
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	5 cut(s)	287, 398, 424, 597, 653
XapI	RAATTY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.