Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7736980 .. 7738218

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTTTATCCTCTTCTGTAACGAAACATCTTATTTCGGCCTCCATATTAGCCATAGTGGCAATGCAACTCCCTTCTGTACACAGTGTTTTATCCCTAAACGAGACCAATGCATATCTGCACCACATATGCATTAACGGTGAAGGGACATTCAAGTCGGGGAGTCCATACGAGAAAGAAATCAAACAACTCATTGATTTTTTGTCATCGTTTATCAAAGACTATAGTTTTGTCCACGGCGTTAGTGGTATTGGTCCCGATGATATCAACGTCAAGTTCCAGTGCCGAGGCGATACCTTACAAGCCAAGTGCCGCTCTTGCCTCGCCACCGCCTTCTCCGAGATTCGTAGTAAATGTCCGAACAACAAAGGGAGAATAATATGGTACGATAACTGTCATCTCGACCTTTCGTCAATCTATACATATGGCCAGATCGATTACAAGAACAATTTCTATATGTACAACGCGAAGGATGTGAGGGGCGATAAAAAGTCTTTCTACAAGAACATGAAGGCATTCCTTCATAAGCTAAAGGCGAAAGCAAGTAGTAAGGAAAACAAACCCTACGTGAAAGACTATATGTATGCAGCAGGAAGGGAAAGTCTTGGGACGGTGAAATTGTACGCAATGGTGCAGTGTACGCAGGACTTATCGCTTAAAAATTGCACTGTGTGTTTGGACTGGATTATGACGAAGCTTCCCGAATGCTGCAATGGTAAACAAGGAGGAAGAGTTTTGAGTCCAAGCTGTAATTTTAGGTATGAGCTATATCCTTTTGTAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142

Pfam Domains

Protein Families

BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

262

Amino Acids

29.62

Weight (kDa)

8.95

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 137	1.9e-19	Salt stress response/antifungal
Stress-antifung	PF01657	162 - 256	4.1e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AccBSI	CCGCTC	1 cut(s)	315
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	313, 330
AcoI	YGGCCR	1 cut(s)	427
AdeI	CACNNNGTG	1 cut(s)	672
AfaI	GTAC	5 cut(s)	81, 386, 461, 623, 640
AgsI	TTSAA	1 cut(s)	154
AhdI	GACNNNNNGTC	1 cut(s)	409
AluBI	AGCT	4 cut(s)	529, 697, 747, 766
AluI	AGCT	4 cut(s)	529, 697, 747, 766
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	39, 427
ApeKI	GCWGC	2 cut(s)	587, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	2 cut(s)	449, 515
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	152, 625
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	599, 695
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	313, 588, 709
BlsI	GCNGC	3 cut(s)	314, 589, 710
Bme18I	GGWCC	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	235, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bse1I	ACTGG	2 cut(s)	280, 686
Bse3DI	GCAATG	3 cut(s)	69, 633, 718
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	235, 286
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	3 cut(s)	69, 633, 718
BseNI	ACTGG	2 cut(s)	280, 686
BseXI	GCAGC	2 cut(s)	599, 695
BsgI	GTGCAG	2 cut(s)	104, 653
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	41, 429
BshVI	ATCGAT	1 cut(s)	435
BslFI	GGGAC	3 cut(s)	160, 240, 622
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	160, 240, 622
BsmI	GAATGC	2 cut(s)	515, 710
BsnI	GGCC	2 cut(s)	41, 429
Bso31I	GGTCTC	1 cut(s)	98
Bsp1407I	TGTACA	2 cut(s)	79, 459
Bsp143I	GATC	1 cut(s)	432
BspACI	CCGC	2 cut(s)	313, 330
BspANI	GGCC	2 cut(s)	41, 429
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	3 cut(s)	69, 633, 718
BsrGI	TGTACA	2 cut(s)	79, 459
BsrI	ACTGG	2 cut(s)	280, 686
BssECI	CCNNGG	2 cut(s)	235, 286
BssMI	GATC	1 cut(s)	432
Bst4CI	ACNGT	5 cut(s)	86, 140, 395, 613, 670
Bst6I	CTCTTC	2 cut(s)	19, 724
BstAUI	TGTACA	2 cut(s)	79, 459
BstBAI	YACGTR	1 cut(s)	568
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 318, 640
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	599, 695
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	41, 429
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	4 cut(s)	91, 287, 641, 666
Cfr13I	GGNCC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	5 cut(s)	80, 385, 460, 622, 639
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	8 cut(s)	41, 53, 305, 429, 529, 697, 747, 766
CviKI_1	RGCY	8 cut(s)	41, 53, 305, 429, 529, 697, 747, 766
CviQI	GTAC	5 cut(s)	80, 385, 460, 622, 639
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
DraIII	CACNNNGTG	1 cut(s)	672
DrdI	GACNNNNNNGTC	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	19, 724
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EarI	CTCTTC	2 cut(s)	19, 724
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	265
EcoT22I	ATGCAT	2 cut(s)	115, 134
FaeI	CATG	1 cut(s)	511
FaqI	GGGAC	3 cut(s)	160, 240, 622
FatI	CATG	1 cut(s)	507
FauNDI	CATATG	2 cut(s)	128, 424
Fnu4HI	GCNGC	3 cut(s)	313, 588, 709
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	313, 588, 709
GluI	GCNGC	3 cut(s)	313, 588, 709
HaeIII	GGCC	2 cut(s)	41, 429
Hin1II	CATG	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	163, 343, 739
HphI	GGTGA	2 cut(s)	152, 625
Hpy166II	GTNNAC	4 cut(s)	82, 235, 639, 719
Hpy188I	TCNGA	2 cut(s)	340, 360
Hpy188III	TCNNGA	3 cut(s)	257, 401, 701
Hpy8I	GTNNAC	4 cut(s)	82, 235, 639, 719
HpyAV	CCTTC	7 cut(s)	84, 137, 343, 463, 505, 530, 588
HpyCH4III	ACNGT	5 cut(s)	86, 140, 395, 613, 670
HpyCH4IV	ACGT	2 cut(s)	270, 567
HpyCH4V	TGCA	8 cut(s)	67, 113, 121, 132, 587, 634, 666, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 318, 640
HpySE526I	ACGT	2 cut(s)	270, 567
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	432
LpnPI	CCDG	5 cut(s)	293, 443, 576, 629, 667
Lsp1109I	GCAGC	2 cut(s)	599, 695
MaeII	ACGT	2 cut(s)	270, 567
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	434
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	1 cut(s)	432
MboII	GAAGA	2 cut(s)	6, 741
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	5 cut(s)	448, 617, 661, 751, 784
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	172, 748
MnlI	CCTC	6 cut(s)	22, 52, 281, 332, 471, 719
Mox20I	TGGCCA	1 cut(s)	429
Mph1103I	ATGCAT	2 cut(s)	115, 134
MroXI	GAANNNNTTC	2 cut(s)	449, 515
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	3 cut(s)	135, 657, 787
Msp20I	TGGCCA	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	515, 710
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	59, 318, 640
NdeI	CATATG	2 cut(s)	128, 424
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	311
NsiI	ATGCAT	2 cut(s)	115, 134
PctI	GAATGC	2 cut(s)	515, 710
PdmI	GAANNNNTTC	2 cut(s)	449, 515
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	314, 589, 710
PleI	GAGTC	2 cut(s)	171, 747
PpsI	GAGTC	2 cut(s)	171, 747
Ppu21I	YACGTR	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	5 cut(s)	81, 386, 461, 623, 640
RsaNI	GTAC	5 cut(s)	80, 385, 460, 622, 639
SaqAI	TTAA	3 cut(s)	135, 657, 787
SatI	GCNGC	3 cut(s)	313, 588, 709
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	172, 748
SetI	ASST	9 cut(s)	273, 299, 408, 531, 570, 699, 749, 761, 768
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	5 cut(s)	448, 617, 661, 751, 784
SsiI	CCGC	2 cut(s)	313, 330
TaaI	ACNGT	5 cut(s)	86, 140, 395, 613, 670
TaiI	ACGT	2 cut(s)	273, 570
TaqI	TCGA	2 cut(s)	402, 435
TasI	AATT	5 cut(s)	448, 617, 661, 751, 784
TatI	WGTACW	2 cut(s)	79, 459
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	135, 657, 787
Tru9I	TTAA	3 cut(s)	135, 657, 787
TscAI	CASTG	4 cut(s)	91, 287, 641, 673
TseI	GCWGC	2 cut(s)	587, 708
TspDTI	ATGAA	2 cut(s)	512, 524
TspRI	CASTG	4 cut(s)	91, 287, 641, 673
VpaK11BI	GGWCC	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmnI	GAANNNNTTC	2 cut(s)	449, 515
Zsp2I	ATGCAT	2 cut(s)	115, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.