AT3G22030

cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002319
Physical Location & Seq
Forward (+)
7759317 .. 7760738
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22030.1

Sequence Viewer

Length: 762 bp
ATGTTCTCTTCATATTCTCTATGCAAATGCCTCGTTTCTTTCCATATATTGGCTATACAAGTCCTCATAAGCTGTGCGTCTTCCTTGAATCTTACTAATGAGTATCTGAACCACAAATGTCGCGTGATCAAGGAAAATACCAACCAGGAAGTGAGTACGAGAAAGAACTCAACACTCTCAGCCGTAGAGTTGCTACCCTTGACTTTACAGATGGTTTCACACACCGGTCCAATAGTAGAGATACCAAATCTGTCACCATCATATTCCAATGTCGCGGTGACTCTTACAGGTCCAAGTGCAACTCCTGCTATGCTACCGCCCTCGCCGGGGTGTCCGAGAAACAAAGGTGGAATAATATGGTATGACCAATGTTTTCTCGATGTTAGTATGATTAATGACAATTCCCCAAGACGGATGAACTACGATAATATTTTTTCTATGCACAACCCAAACAACGTGAGAGGGAATGTAAACTCATTCAACAAAAAGACGACTGAATTCCTCTACAAACTGATTGGAAAAGCTGATAGACTCGACGTGGACGGGATCAACTTTCTATATTACGCGGCAGGGGAAATGAGGCTTGGGAAGCAAACATTGTTTGCAATGGTGCAATGTGCGAAGGACATATTGAGTTGTAAGGATTGTTTGGAATGGAGTATCAAGGAGCTTTCTAAGTGCTGTGATGGTAAACAAGGAGCGAGAGTTGTAGGTACAATTTGTAATCTTAGGTATGAGCTATACCCTTTTCTTAGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

253

Amino Acids

28.29

Weight (kDa)

8.68

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 156 - 247 1.2e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 3 cut(s) 123, 275, 566
AciI CCGC 3 cut(s) 275, 317, 566
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 2 cut(s) 157, 715
AfiI CCNNNNNNNGG 4 cut(s) 49, 326, 327, 411
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 2 cut(s) 88, 481
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 4 cut(s) 72, 524, 670, 739
AluI AGCT 4 cut(s) 72, 524, 670, 739
AlwI GGATC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 497
AseI ATTAAT 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 227, 290
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 246, 289
AvaII GGWCC 2 cut(s) 227, 290
BbsI GAAGAC 1 cut(s) 72
BccI CCATC 3 cut(s) 205, 265, 680
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 1 cut(s) 327
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 2 cut(s) 146, 327
Bme18I GGWCC 2 cut(s) 227, 290
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 227, 290
BmrFI CCNGG 2 cut(s) 146, 327
BpiI GAAGAC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 326, 327, 411
Bse118I RCCGGY 1 cut(s) 224
Bse3DI GCAATG 2 cut(s) 612, 620
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 49, 326, 327, 411
BseMI GCAATG 2 cut(s) 612, 620
BseMII CTCAG 1 cut(s) 192
Bsh1236I CGCG 3 cut(s) 123, 275, 566
BshTI ACCGGT 1 cut(s) 224
BsiSI CCGG 2 cut(s) 225, 326
BslI CCNNNNNNNGG 4 cut(s) 49, 326, 327, 411
Bsp143I GATC 2 cut(s) 126, 546
BspACI CCGC 3 cut(s) 275, 317, 566
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 3 cut(s) 123, 275, 566
BspPI GGATC 1 cut(s) 554
BsrDI GCAATG 2 cut(s) 612, 620
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 2 cut(s) 126, 546
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 178, 675, 728, 752
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 3 cut(s) 123, 275, 566
BstKTI GATC 2 cut(s) 129, 549
BstMBI GATC 2 cut(s) 126, 546
BstMWI GCNNNNNNNGC 2 cut(s) 305, 589
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 144, 325
BstUI CGCG 3 cut(s) 123, 275, 566
BstV2I GAAGAC 1 cut(s) 72
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 227, 290
CseI GACGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 156, 714
CspAI ACCGGT 1 cut(s) 224
CviJI RGCY 7 cut(s) 53, 72, 182, 524, 583, 670, 739
CviKI_1 RGCY 7 cut(s) 53, 72, 182, 524, 583, 670, 739
CviQI GTAC 2 cut(s) 156, 714
DdeI CTNAG 4 cut(s) 178, 675, 728, 752
DpnI GATC 2 cut(s) 128, 548
DpnII GATC 2 cut(s) 126, 546
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 227, 290
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 567
GluI GCNGC 1 cut(s) 567
HapII CCGG 2 cut(s) 225, 326
HgaI GACGC 1 cut(s) 66
HinfI GANTC 3 cut(s) 88, 280, 531
HpaII CCGG 2 cut(s) 225, 326
HphI GGTGA 2 cut(s) 246, 289
Hpy166II GTNNAC 3 cut(s) 472, 541, 692
Hpy188I TCNGA 2 cut(s) 108, 336
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 3 cut(s) 472, 541, 692
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 1 cut(s) 616
HpyCH4IV ACGT 2 cut(s) 456, 537
HpyCH4V TGCA 5 cut(s) 24, 299, 442, 605, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 589
HpyF3I CTNAG 4 cut(s) 178, 675, 728, 752
HpySE526I ACGT 2 cut(s) 456, 537
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 546
LmnI GCTCC 2 cut(s) 667, 698
LpnPI CCDG 7 cut(s) 131, 158, 238, 273, 318, 339, 555
MaeII ACGT 2 cut(s) 456, 537
MaeIII GTNAC 2 cut(s) 252, 277
MalI GATC 2 cut(s) 128, 548
MboI GATC 2 cut(s) 126, 546
MboII GAAGA 1 cut(s) 72
MluCI AATT 3 cut(s) 400, 497, 717
MlyI GAGTC 2 cut(s) 274, 525
MnlI CCTC 6 cut(s) 41, 74, 331, 455, 512, 573
MseI TTAA 2 cut(s) 393, 760
MspI CCGG 2 cut(s) 225, 326
MspR9I CCNGG 2 cut(s) 146, 327
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 3 cut(s) 123, 275, 566
MwoI GCNNNNNNNGC 2 cut(s) 305, 589
NciI CCSGG 1 cut(s) 327
NdeII GATC 2 cut(s) 126, 546
NmuCI GTSAC 2 cut(s) 252, 277
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 2 cut(s) 274, 525
PpsI GAGTC 2 cut(s) 274, 525
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 2 cut(s) 227, 290
RsaI GTAC 2 cut(s) 157, 715
RsaNI GTAC 2 cut(s) 156, 714
SaqAI TTAA 2 cut(s) 393, 760
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 2 cut(s) 126, 546
Sau96I GGNCC 2 cut(s) 227, 290
SchI GAGTC 2 cut(s) 274, 525
ScrFI CCNGG 2 cut(s) 146, 327
SinI GGWCC 2 cut(s) 227, 290
Sse9I AATT 3 cut(s) 400, 497, 717
SsiI CCGC 3 cut(s) 275, 317, 566
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 144, 325
TaiI ACGT 2 cut(s) 459, 540
TaqI TCGA 2 cut(s) 378, 534
TasI AATT 3 cut(s) 400, 497, 717
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 393, 760
Tru9I TTAA 2 cut(s) 393, 760
TseFI GTSAC 2 cut(s) 252, 277
Tsp45I GTSAC 2 cut(s) 252, 277
TspDTI ATGAA 1 cut(s) 431
TspGWI ACGGA 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 227, 290
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.