Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7761807 .. 7762751

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTACTCTTCATATTCTCTATCCAAATGCCTCGTTTCTTTCCATATCTTGGCCATACAACTCTTCATACCTAGCGTTGCATCACTGAATCTTACAAATGTGTACCTTCACCACAAATGCCGGGTTGGTCAAGGTAAATACCACCCGGGAAGTAGATACGAGAAAGACTTCGACTCTCTCACCAGTTTCGTCGCTGCTAATAAGTTTATAGATGGGTTCGTACACAGCTCTAATAGTGACGGTCCCAATTCCACTACCATCATATTCCAGTGTCGTGGTGACTCTTACAAGTCTAACTGTCGAACCTGCTATGACACCGCTCTGGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGTGGAATAATATGGTACGACCAATGTTTTCTCGATGTTAGTATGATCAATGACCTAGCCCCAAGGAAGATCAATTACAAGGATACTTTTGCTATGCACAACCCAAACAATGTGAGGGGGGATACAAAGATGTTCAGCAAGAAGACAAATGATTTCCTCCAACAGCTGATTGTGAAAGCTGATAAACCCGACATGGACGGCGTCGAGTTGTTATATTATGCGGCGGGAGAGATGAGAATCGGGAGGGAAAAACTGCATGCGATGGTGCAGTGTGCGAAAGACCTAGCGGACTGTAAGTCTTGTTTGGAATGGAGTTTCAAGGAGCTTTCTAAGTGCTGCGACGGTAAACGAGGAGCGAGATTTTTGGGTACAAGCTGTAATCTTAGGTATGAGCTATATCCTTTTCTTAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

257

Amino Acids

29.28

Weight (kDa)

9.03

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	40 - 133	1.2e-18	Salt stress response/antifungal
Stress-antifung	PF01657	159 - 251	2.2e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	320
AciI	CCGC	4 cut(s)	318, 578, 581, 644
AcoI	YGGCCR	2 cut(s)	51, 324
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	5 cut(s)	5, 104, 222, 374, 727
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	676
AhdI	GACNNNNNGTC	1 cut(s)	652
AluBI	AGCT	6 cut(s)	228, 523, 536, 682, 732, 751
AluI	AGCT	6 cut(s)	228, 523, 536, 682, 732, 751
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	51, 324
ApeKI	GCWGC	2 cut(s)	194, 693
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	4 cut(s)	122, 146, 147, 328
AsuHPI	GGTGA	3 cut(s)	101, 172, 290
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	416, 448
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	181, 680
BccI	CCATC	3 cut(s)	206, 266, 613
BceAI	ACGGC	1 cut(s)	571
BciVI	GTATCC	2 cut(s)	433, 472
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	4 cut(s)	122, 146, 147, 328
BfaI	CTAG	3 cut(s)	72, 413, 641
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	2 cut(s)	433, 472
BisI	GCNGC	3 cut(s)	195, 579, 694
BlsI	GCNGC	3 cut(s)	196, 580, 695
Bme1390I	CCNGG	4 cut(s)	122, 146, 147, 328
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	4 cut(s)	122, 146, 147, 328
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	506
BpuMI	CCSGG	4 cut(s)	122, 146, 147, 328
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	145, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	183, 268
Bse8I	GATNNNNATC	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	145, 419
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	183, 268
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	181, 680
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	2 cut(s)	53, 326
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	121, 146, 327
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	53, 326
BsoBI	CYCGRG	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	402, 426
BspACI	CCGC	4 cut(s)	318, 578, 581, 644
BspANI	GGCC	2 cut(s)	53, 326
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	183, 268
BssECI	CCNNGG	2 cut(s)	145, 419
BssMI	GATC	2 cut(s)	402, 426
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	242, 299, 650, 701
Bst6I	CTCTTC	2 cut(s)	13, 68
BstACI	GRCGYC	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	3 cut(s)	687, 740, 764
BstKTI	GATC	2 cut(s)	405, 429
BstMBI	GATC	2 cut(s)	402, 426
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	120, 144, 145, 326
BstV1I	GCAGC	2 cut(s)	181, 680
BstV2I	GAAGAC	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuI	GTATCC	2 cut(s)	433, 472
BsuRI	GGCC	2 cut(s)	53, 326
BtgZI	GCGATG	1 cut(s)	632
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	3 cut(s)	83, 275, 632
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	5 cut(s)	4, 103, 221, 373, 726
CviAII	CATG	2 cut(s)	550, 614
CviJI	RGCY	9 cut(s)	53, 228, 326, 416, 523, 536, 682, 732, 751
CviKI_1	RGCY	9 cut(s)	53, 228, 326, 416, 523, 536, 682, 732, 751
CviQI	GTAC	5 cut(s)	4, 103, 221, 373, 726
DdeI	CTNAG	3 cut(s)	687, 740, 764
DpnI	GATC	2 cut(s)	404, 428
DpnII	GATC	2 cut(s)	402, 426
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	51, 324
Eam1104I	CTCTTC	2 cut(s)	13, 68
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	2 cut(s)	13, 68
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	553, 617
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	2 cut(s)	549, 613
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	195, 579, 694
Fsp4HI	GCNGC	3 cut(s)	195, 579, 694
FspBI	CTAG	3 cut(s)	72, 413, 641
GluI	GCNGC	3 cut(s)	195, 579, 694
HaeIII	GGCC	2 cut(s)	53, 326
HapII	CCGG	3 cut(s)	121, 146, 327
HgaI	GACGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	2 cut(s)	553, 617
HinfI	GANTC	4 cut(s)	88, 173, 281, 594
HpaII	CCGG	3 cut(s)	121, 146, 327
HphI	GGTGA	3 cut(s)	101, 172, 290
Hpy166II	GTNNAC	3 cut(s)	103, 223, 704
Hpy188III	TCNNGA	2 cut(s)	389, 598
Hpy8I	GTNNAC	3 cut(s)	103, 223, 704
Hpy99I	CGWCG	3 cut(s)	194, 563, 701
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	4 cut(s)	242, 299, 650, 701
HpyCH4V	TGCA	4 cut(s)	80, 454, 613, 625
HpyF3I	CTNAG	3 cut(s)	687, 740, 764
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	553, 617
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	402, 426
LmnI	GCTCC	2 cut(s)	679, 710
LpnPI	CCDG	7 cut(s)	134, 159, 196, 281, 308, 319, 340
Lsp1109I	GCAGC	2 cut(s)	181, 680
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	3 cut(s)	72, 413, 641
MaeIII	GTNAC	2 cut(s)	236, 278
MalI	GATC	2 cut(s)	404, 428
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	2 cut(s)	402, 426
MboII	GAAGA	3 cut(s)	55, 436, 511
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	247, 430
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	167, 275
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	5 cut(s)	41, 465, 524, 594, 701
Mox20I	TGGCCA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	3 cut(s)	121, 146, 327
MspR9I	CCNGG	4 cut(s)	122, 146, 147, 328
NciI	CCSGG	4 cut(s)	122, 146, 147, 328
NdeII	GATC	2 cut(s)	402, 426
NlaIII	CATG	2 cut(s)	553, 617
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	236, 278
NspI	RCATGY	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	88, 594
PflFI	GACNNNGTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	196, 580, 695
PleI	GAGTC	2 cut(s)	167, 275
PpsI	GAGTC	2 cut(s)	167, 275
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	5 cut(s)	5, 104, 222, 374, 727
RsaNI	GTAC	5 cut(s)	4, 103, 221, 373, 726
SatI	GCNGC	3 cut(s)	195, 579, 694
Sau3AI	GATC	2 cut(s)	402, 426
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	167, 275
ScrFI	CCNGG	4 cut(s)	122, 146, 147, 328
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	242
SmaI	CCCGGG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	2 cut(s)	247, 430
SsiI	CCGC	4 cut(s)	318, 578, 581, 644
SspMI	CTAG	3 cut(s)	72, 413, 641
StyD4I	CCNGG	4 cut(s)	120, 144, 145, 326
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	242, 299, 650, 701
TaqI	TCGA	4 cut(s)	171, 301, 390, 561
TasI	AATT	2 cut(s)	247, 430
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	88, 594
TscAI	CASTG	3 cut(s)	90, 275, 632
TseFI	GTSAC	2 cut(s)	236, 278
TseI	GCWGC	2 cut(s)	194, 693
Tsp45I	GTSAC	2 cut(s)	236, 278
TspDTI	ATGAA	1 cut(s)	55
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	3 cut(s)	90, 275, 632
Tth111I	GACNNNGTC	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	617
XmaI	CCCGGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	72, 413, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.