AT3G29050

cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002319
Physical Location & Seq
Reverse (-)
11039355 .. 11040755
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29050.1

Sequence Viewer

Length: 723 bp
ATGGCACAACTGCTCCTTATCCGAAACGTTTTGTCCTTGAACATGAACAATCCGTACTTGTACCATAAATGCTCAGCCAATCAAGGGGAGTACAAGCTAGGAAGCCTCTACAAAAAATCCCTCGATTCTGGCATCCAACAATTGTCGAAAGATAATGAAGTTTTTCGTGGCGGTTTCGTCTATATGGACCACACCGATCCTAATGGAACTCGGTCTACATCACCTTTCAATGCCGTGGAGACATTTACGGGTCCCACTGTCGCTCTTGCTTTGCCACTGCCCGGGCTGAGTACTGGAGGGAAGATCAATTACGATGACAATATCTGTATTGATACCGCAAGGGCAAGGCCGAATGCGAAAACTCATACCGGTGATGATTCAGTTTTGGAGTTTTTGAGACTCTTCGAAAATCTGACAAATATAGCCGTCACTAAAAGAAATAACTTCGTAAAAGATGTGGAGAAACCGGCACTATATGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAATGGTTCAGTGTACGCATGACTTAACTCCTAGGGCTTGTGTGGAGTGTGTGAATCATAATGTCCGGCAATTTCAAGATTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCTAGAGTTTTGGGTAGGAGCTGTAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCCAAGACCAGTCCTAACTATTTGAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

240

Amino Acids

27.02

Weight (kDa)

9.18

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 158 - 226 1.7e-09 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 3 cut(s) 171, 336, 479
AclI AACGTT 1 cut(s) 27
AclWI GGATC 1 cut(s) 191
AfaI GTAC 5 cut(s) 56, 62, 92, 292, 532
AfiI CCNNNNNNNGG 2 cut(s) 84, 281
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 5 cut(s) 40, 229, 593, 625, 715
AluBI AGCT 2 cut(s) 97, 654
AluI AGCT 2 cut(s) 97, 654
Alw26I GTCTC 2 cut(s) 233, 391
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 2 cut(s) 162, 494
AspA2I CCTAGG 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 187, 251
AsuC2I CCSGG 2 cut(s) 282, 283
AsuHPI GGTGA 2 cut(s) 213, 383
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 187, 251
AvrII CCTAGG 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BceAI ACGGC 2 cut(s) 218, 410
BcnI CCSGG 2 cut(s) 282, 283
BcoDI GTCTC 2 cut(s) 233, 391
BfaI CTAG 3 cut(s) 98, 549, 636
BglII AGATCT 1 cut(s) 510
BisI GCNGC 1 cut(s) 480
BlnI CCTAGG 1 cut(s) 548
BlpI GCTNAGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 481
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 282, 283
Bme18I GGWCC 2 cut(s) 187, 251
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 187, 251
BmiI GGNNCC 2 cut(s) 252, 253
BmrFI CCNGG 2 cut(s) 282, 283
BmsI GCATC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 282, 283
BsaJI CCNNGG 3 cut(s) 234, 281, 548
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 281
Bse118I RCCGGY 2 cut(s) 368, 466
Bse1I ACTGG 3 cut(s) 298, 614, 699
BseDI CCNNGG 3 cut(s) 234, 281, 548
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 84, 281
BseMII CTCAG 2 cut(s) 87, 278
BseNI ACTGG 3 cut(s) 298, 614, 699
BshFI GGCC 1 cut(s) 349
BshTI ACCGGT 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 4 cut(s) 282, 369, 467, 583
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 84, 281
BsmAI GTCTC 2 cut(s) 233, 391
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 405
Bsp143I GATC 3 cut(s) 196, 303, 510
Bsp1720I GCTNAGC 1 cut(s) 73
BspACI CCGC 3 cut(s) 171, 336, 479
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 86, 279
BspLI GGNNCC 2 cut(s) 252, 253
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 368, 466
BsrI ACTGG 3 cut(s) 298, 614, 699
BssAI RCCGGY 2 cut(s) 368, 466
BssECI CCNNGG 3 cut(s) 234, 281, 548
BssMI GATC 3 cut(s) 196, 303, 510
BssT1I CCWWGG 1 cut(s) 548
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 73, 287
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 3 cut(s) 199, 306, 513
BstMAI GTCTC 2 cut(s) 233, 391
BstMBI GATC 3 cut(s) 196, 303, 510
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 280, 281
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 3 cut(s) 255, 275, 533
Cfr10I RCCGGY 2 cut(s) 368, 466
Cfr13I GGNCC 2 cut(s) 187, 251
Cfr9I CCCGGG 1 cut(s) 281
Csp6I GTAC 5 cut(s) 55, 61, 91, 291, 531
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 2 cut(s) 43, 536
CviJI RGCY 8 cut(s) 77, 97, 105, 286, 349, 425, 554, 654
CviKI_1 RGCY 8 cut(s) 77, 97, 105, 286, 349, 425, 554, 654
CviQI GTAC 5 cut(s) 55, 61, 91, 291, 531
DdeI CTNAG 2 cut(s) 73, 287
DpnI GATC 3 cut(s) 198, 305, 512
DpnII GATC 3 cut(s) 196, 303, 510
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 187, 251
Eco88I CYCGRG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 2 cut(s) 46, 539
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 42, 535
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 3 cut(s) 98, 549, 636
GluI GCNGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 349
HapII CCGG 4 cut(s) 282, 369, 467, 583
Hin1II CATG 2 cut(s) 46, 539
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 4 cut(s) 125, 377, 399, 571
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 4 cut(s) 282, 369, 467, 583
HphI GGTGA 2 cut(s) 213, 383
Hpy166II GTNNAC 3 cut(s) 216, 531, 688
Hpy188I TCNGA 3 cut(s) 23, 414, 500
Hpy188III TCNNGA 1 cut(s) 593
Hpy8I GTNNAC 3 cut(s) 216, 531, 688
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 73, 287
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 46, 539
KflI GGGWCCC 1 cut(s) 251
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 3 cut(s) 196, 303, 510
LmnI GCTCC 2 cut(s) 18, 651
LpnPI CCDG 9 cut(s) 114, 279, 295, 382, 468, 480, 596, 627, 712
LweI GCATC 1 cut(s) 141
MaeI CTAG 3 cut(s) 98, 549, 636
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 427, 656, 674
MalI GATC 3 cut(s) 198, 305, 512
MboI GATC 3 cut(s) 196, 303, 510
MboII GAAGA 4 cut(s) 313, 394, 520, 617
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 1 cut(s) 510
MluCI AATT 3 cut(s) 140, 307, 587
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 116, 131, 290
MroXI GAANNNNTTC 2 cut(s) 162, 494
MseI TTAA 2 cut(s) 542, 687
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 4 cut(s) 282, 369, 467, 583
MspR9I CCNGG 2 cut(s) 282, 283
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 476
NciI CCSGG 2 cut(s) 282, 283
NdeII GATC 3 cut(s) 196, 303, 510
NlaIII CATG 2 cut(s) 46, 539
NlaIV GGNNCC 2 cut(s) 252, 253
NmuCI GTSAC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 405
PctI GAATGC 1 cut(s) 358
PdmI GAANNNNTTC 2 cut(s) 162, 494
PfeI GAWTC 3 cut(s) 125, 377, 571
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 252, 253
PspPI GGNCC 2 cut(s) 187, 251
PspPPI RGGWCCY 1 cut(s) 251
PsrI GAACNNNNNNTAC 4 cut(s) 38, 70, 199, 231
PsuI RGATCY 1 cut(s) 510
RsaI GTAC 5 cut(s) 56, 62, 92, 292, 532
RsaNI GTAC 5 cut(s) 55, 61, 91, 291, 531
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 542, 687
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 3 cut(s) 196, 303, 510
Sau96I GGNCC 2 cut(s) 187, 251
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 2 cut(s) 282, 283
SetI ASST 8 cut(s) 30, 99, 226, 497, 622, 634, 656, 668
SfaNI GCATC 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 2 cut(s) 187, 251
SmaI CCCGGG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 369
SrfI GCCCGGGC 1 cut(s) 283
Sse9I AATT 3 cut(s) 140, 307, 587
SsiI CCGC 3 cut(s) 171, 336, 479
SspMI CTAG 3 cut(s) 98, 549, 636
StyD4I CCNGG 2 cut(s) 280, 281
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 123, 146, 405
TaqII GACCGA 1 cut(s) 201
TasI AATT 3 cut(s) 140, 307, 587
TatI WGTACW 2 cut(s) 90, 290
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 3 cut(s) 125, 377, 571
Tru1I TTAA 2 cut(s) 542, 687
Tru9I TTAA 2 cut(s) 542, 687
TscAI CASTG 3 cut(s) 262, 282, 533
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 59, 171, 618
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 281
TspRI CASTG 3 cut(s) 262, 282, 533
VpaK11BI GGWCC 2 cut(s) 187, 251
XmaI CCCGGG 1 cut(s) 281
XmaJI CCTAGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 162, 494
XspI CTAG 3 cut(s) 98, 549, 636
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.