Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

11054952 .. 11056287

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAAAAACACACACACCAAAAATATCAGATATCTCAAACAATGTCTTCAGTTTTTGGATCTGTCCATATCTTGGCCATGATAGCCATACAACTCCTCCTTACACACAGTGTTTCATCTCTGAACCTTACCAATGCGTATCTGCACCACAAATGCAGCAACACTCAAGGAAAATATAAGCAGGGGAGCGCGTTCGAGAAAAATCTCAACTTAGTCCTCAGTACCATCACCTCGATTGGAAATTTTCGTGACGGTTTCCGCTACACCGAAGAAGGTGAGGATCCCAATAACGTCTTTGTCATGTTCCAGTGTCGCGGCGACTCCTACTGGTCCAAGTGCCCCCCTTGCATTAGCACCGCCGTCTCTGGGCTTCGTAGGAGATGTCCAAGAAATAAGGGAGCAATAATATGGTATGACCAATGTCTTTTAAAGATATCTTCAGTTGCCTCCTTCAATAAGATAGATTATGAGAACGATTTCTATTTGTCCAACCCAAACAACATGAGTGATCGGGGGTTGTTCAACAAGGAGACGTCGGCTCTCCTGGAGAAGCTGGCATATAAAGCCTCCGATAGAAACAACTTGGATGGTAAACAATTGGTGTTGTACGCAGCAGGGGAGAAGAGAATTGGGACAAAGAAGGTGTATGCAATGGTGCAGTGTACGAAAGACTTAATATTTACAAAGTGCTTTGAGTGTTTGGAAGGGATTTTGAGGAAGTTTCCACAGTGTTGTGACGGTAAACGAGGAGGGAGAGTTTTCGGTACGAGCTGTAACTTTAGGTATGAGTTATATCCTTTTCTTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

270

Amino Acids

30.76

Weight (kDa)

9.31

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	51 - 146	7.7e-24	Salt stress response/antifungal
Stress-antifung	PF01657	166 - 264	7.4e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccII	CGCG	2 cut(s)	191, 315
AciI	CCGC	3 cut(s)	259, 315, 357
AclWI	GGATC	3 cut(s)	67, 275, 288
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	33, 423
AcyI	GRCGYC	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	4 cut(s)	223, 608, 664, 766
AfiI	CCNNNNNNNGG	2 cut(s)	73, 366
AgsI	TTSAA	2 cut(s)	454, 523
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	2 cut(s)	553, 771
AluI	AGCT	2 cut(s)	553, 771
Alw26I	GTCTC	2 cut(s)	367, 524
AlwI	GGATC	3 cut(s)	67, 275, 288
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	156, 611
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	220, 287
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	168, 623
BccI	CCATC	2 cut(s)	233, 581
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	367, 524
BisI	GCNGC	3 cut(s)	157, 316, 612
BlsI	GCNGC	3 cut(s)	158, 317, 613
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	545
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	533
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 366
Bse1I	ACTGG	2 cut(s)	307, 332
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	73, 366
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	307, 332
BseRI	GAGGAG	2 cut(s)	86, 762
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	168, 623
BsgI	GTGCAG	2 cut(s)	128, 677
Bsh1236I	CGCG	2 cut(s)	191, 315
BshFI	GGCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	73, 366
BsmAI	GTCTC	2 cut(s)	367, 524
BsmBI	CGTCTC	2 cut(s)	367, 524
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	59, 280, 508
BspACI	CCGC	3 cut(s)	259, 315, 357
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	191, 315
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	67, 275, 288
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	307, 332
BssMI	GATC	3 cut(s)	59, 280, 508
BssNI	GRCGYC	1 cut(s)	533
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	4 cut(s)	110, 254, 729, 740
Bst6I	CTCTTC	1 cut(s)	617
BstACI	GRCGYC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	211, 218, 803
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	2 cut(s)	191, 315
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	62, 283, 511
BstMAI	GTCTC	2 cut(s)	367, 524
BstMBI	GATC	3 cut(s)	59, 280, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 345, 563
BstNI	CCWGG	1 cut(s)	545
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	2 cut(s)	191, 315
BstV1I	GCAGC	2 cut(s)	168, 623
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	59, 280
BstYI	RGATCY	2 cut(s)	59, 280
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	4 cut(s)	115, 314, 665, 734
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	4 cut(s)	222, 607, 663, 765
CviAII	CATG	3 cut(s)	79, 301, 502
CviJI	RGCY	7 cut(s)	77, 86, 370, 539, 553, 566, 771
CviKI_1	RGCY	7 cut(s)	77, 86, 370, 539, 553, 566, 771
CviQI	GTAC	4 cut(s)	222, 607, 663, 765
DdeI	CTNAG	3 cut(s)	211, 218, 803
DpnI	GATC	3 cut(s)	61, 282, 510
DpnII	GATC	3 cut(s)	59, 280, 508
DraI	TTTAAA	1 cut(s)	429
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco32I	GATATC	2 cut(s)	33, 435
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	33, 423
EcoRII	CCWGG	1 cut(s)	543
EcoRV	GATATC	2 cut(s)	33, 435
Esp3I	CGTCTC	2 cut(s)	367, 524
FaeI	CATG	3 cut(s)	82, 304, 505
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	78, 300, 501
Fnu4HI	GCNGC	3 cut(s)	157, 316, 612
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	3 cut(s)	157, 316, 612
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	157, 316, 612
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	3 cut(s)	82, 304, 505
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	220, 287
Hpy166II	GTNNAC	3 cut(s)	593, 663, 743
Hpy188I	TCNGA	3 cut(s)	30, 123, 571
Hpy188III	TCNNGA	2 cut(s)	196, 248
Hpy8I	GTNNAC	3 cut(s)	593, 663, 743
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	4 cut(s)	266, 460, 634, 698
HpyCH4III	ACNGT	4 cut(s)	110, 254, 729, 740
HpyCH4IV	ACGT	2 cut(s)	291, 533
HpyCH4V	TGCA	5 cut(s)	145, 156, 348, 650, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 345, 563
HpyF3I	CTNAG	3 cut(s)	211, 218, 803
HpySE526I	ACGT	2 cut(s)	291, 533
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	82, 304, 505
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	59, 280, 508
LmnI	GCTCC	2 cut(s)	186, 398
LpnPI	CCDG	8 cut(s)	167, 313, 320, 351, 530, 539, 557, 600
Lsp1109I	GCAGC	2 cut(s)	168, 623
MaeII	ACGT	2 cut(s)	291, 533
MaeIII	GTNAC	3 cut(s)	248, 734, 773
MalI	GATC	3 cut(s)	61, 282, 510
MboI	GATC	3 cut(s)	59, 280, 508
MboII	GAAGA	4 cut(s)	39, 281, 429, 634
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	2 cut(s)	59, 280
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	3 cut(s)	241, 596, 627
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	9 cut(s)	107, 227, 241, 271, 457, 577, 708, 740, 743
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	428, 674
Msp20I	TGGCCA	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	2 cut(s)	191, 315
MwoI	GCNNNNNNNGC	3 cut(s)	83, 345, 563
NdeII	GATC	3 cut(s)	59, 280, 508
NlaIII	CATG	3 cut(s)	82, 304, 505
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	248, 734
PdmI	GAANNNNTTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	3 cut(s)	158, 317, 613
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	59, 280
RsaI	GTAC	4 cut(s)	223, 608, 664, 766
RsaNI	GTAC	4 cut(s)	222, 607, 663, 765
SaqAI	TTAA	2 cut(s)	428, 674
SatI	GCNGC	3 cut(s)	157, 316, 612
Sau3AI	GATC	3 cut(s)	59, 280, 508
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	9 cut(s)	129, 233, 277, 294, 536, 555, 645, 773, 785
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	241, 596, 627
SsiI	CCGC	3 cut(s)	259, 315, 357
SspI	AATATT	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	4 cut(s)	110, 254, 729, 740
TaiI	ACGT	2 cut(s)	294, 536
TaqI	TCGA	2 cut(s)	195, 233
TasI	AATT	3 cut(s)	241, 596, 627
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	428, 674
Tru9I	TTAA	2 cut(s)	428, 674
TscAI	CASTG	4 cut(s)	115, 314, 665, 734
TseFI	GTSAC	2 cut(s)	248, 734
TseI	GCWGC	2 cut(s)	156, 611
Tsp45I	GTSAC	2 cut(s)	248, 734
TspDTI	ATGAA	2 cut(s)	17, 105
TspRI	CASTG	4 cut(s)	115, 314, 665, 734
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	476
ZraI	GACGTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.