Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002319

Physical Location & Seq

Genomic Coordinates Forward (+)

7729646 .. 7731249

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTTCATCGTCTGCATCAAAACTTCTTGGTTCGGTCCTTGTCTTTGCTATGATTTCCGTACAAATCGTTTTTATACACTGTGTTATGTCCCTGAATGAAACCAATTCGCTGAACCAAACCAATGTTTATCTGCACCACATATGCATCAACAGTCAAGGGACATACAAACCAGGGAGTCCATACGAGGAAAACCTCAACCGTGTCATCCGTGCAATATCTATCACAATTTCTAACTATGGTTTCGTTCATGGTTCCAATGGTGATGCTCCCAATACCGTTTTTGGAAAGCTCCAATGTCAGGCGACTCTTACTTGTCCAAGTGCCGCTCTTGCCTCACCACCGCTTTCTCCGAGATGTCCGAAAAACAAGGGGAGAATAATATGGTACGATAATTGTCTTCTAGAGATATCTCCAATTAATTCTTTAGGCAAGATTGATTACGAGTATAATTTCTATATGTACAACGAGAAAGATGTGAACGGCGATACAAATTTGTTCAACAAGAATACGAGGGCTCTCCTCTATAGGCTGAAAGAGAAAGCCACAAGTAAAGAAAACAATAACGGCAAGCAGGACTTACCCGAGATTGGGGGAAAAAGGCTCGGAATGAAGATGTTGTATGCGACAGGAGAGAAAAGTCTCAGGACGATGAAGTTGTACGGAATGGTGCAGTGTACAAAGGACTTATCGATTAAAGATTGCATTGTGTGTTTGAACTGGATTATAGCGAAACTTCCGACATGCTGCAGTAATAAACAAGGGGGTAGAGTTTTGAGTACGAGCTGTAATTTTAGGTACGAGCTTTACCGTTTTGTAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

275

Amino Acids

30.77

Weight (kDa)

9.19

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	49 - 138	5.5e-13	Salt stress response/antifungal
Stress-antifung	PF01657	162 - 269	2.5e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT2G31620 AT3G21900 AT3G21900 AT3G21910 AT3G21920 AT3G21920 AT3G21930 AT3G21940 AT3G21940 AT3G21945 AT3G21960 AT3G21970 AT3G21980 AT3G21990 AT3G22000 AT3G22010 AT3G22020 AT3G22020 AT3G22030 AT3G22040 AT3G22050 AT3G22053 AT3G22057 AT3G29040 AT3G29050 AT3G29050 AT3G58310 AT4G20530 AT4G20540 AT4G20550 AT4G20560 AT4G20570 AT4G20580 AT4G20590 AT4G20600 AT4G20610 AT4G20620 AT4G20630 AT4G20640 AT4G20645 AT4G20670 AT4G20680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	2 cut(s)	327, 344
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	7 cut(s)	63, 389, 464, 662, 679, 781, 800
AfiI	CCNNNNNNNGG	3 cut(s)	301, 590, 591
AgsI	TTSAA	2 cut(s)	502, 718
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	292, 786, 805
AluI	AGCT	3 cut(s)	292, 786, 805
Alw26I	GTCTC	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	747
ApoI	RAATTY	1 cut(s)	493
AseI	ATTAAT	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	275, 330
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	734
BceAI	ACGGC	2 cut(s)	499, 583
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	526, 748
BisI	GCNGC	2 cut(s)	327, 748
BlsI	GCNGC	2 cut(s)	328, 749
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	26, 156, 256
BpiI	GAAGAC	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 590, 591
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	301, 590, 591
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	734
BsgI	GTGCAG	2 cut(s)	119, 692
BshVI	ATCGAT	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	584
BslFI	GGGAC	2 cut(s)	76, 175
BslI	CCNNNNNNNGG	3 cut(s)	301, 590, 591
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	2 cut(s)	76, 175
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	2 cut(s)	462, 677
BspACI	CCGC	2 cut(s)	327, 344
BspCNI	CTCAG	1 cut(s)	657
BspDI	ATCGAT	1 cut(s)	692
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	329
BsrGI	TGTACA	2 cut(s)	462, 677
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	5 cut(s)	83, 155, 203, 280, 812
BstAUI	TGTACA	2 cut(s)	462, 677
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	2 cut(s)	526, 748
BstV1I	GCAGC	1 cut(s)	734
BstV2I	GAAGAC	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	692
BsuTUI	ATCGAT	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	2 cut(s)	79, 680
Cac8I	GCNNGC	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	692
Csp6I	GTAC	7 cut(s)	62, 388, 463, 661, 678, 780, 799
CviAII	CATG	2 cut(s)	251, 744
CviJI	RGCY	7 cut(s)	292, 518, 532, 545, 604, 786, 805
CviKI_1	RGCY	7 cut(s)	292, 518, 532, 545, 604, 786, 805
CviQI	GTAC	7 cut(s)	62, 388, 463, 661, 678, 780, 799
DdeI	CTNAG	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	2 cut(s)	254, 747
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	2 cut(s)	76, 175
FatI	CATG	2 cut(s)	250, 743
FauNDI	CATATG	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	327, 748
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	327, 748
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	2 cut(s)	327, 748
Hin1II	CATG	2 cut(s)	254, 747
HinfI	GANTC	2 cut(s)	178, 307
HphI	GGTGA	2 cut(s)	275, 330
Hpy166II	GTNNAC	2 cut(s)	481, 678
Hpy188I	TCNGA	4 cut(s)	354, 363, 608, 741
Hpy188III	TCNNGA	2 cut(s)	404, 646
Hpy8I	GTNNAC	2 cut(s)	481, 678
HpyCH4III	ACNGT	5 cut(s)	83, 155, 203, 280, 812
HpyCH4V	TGCA	7 cut(s)	17, 136, 147, 215, 673, 705, 750
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	644
Hsp92II	CATG	2 cut(s)	254, 747
LmnI	GCTCC	2 cut(s)	274, 297
LpnPI	CCDG	8 cut(s)	107, 159, 186, 287, 560, 615, 631, 706
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	3 cut(s)	26, 156, 256
MaeI	CTAG	1 cut(s)	404
MbiI	CCGCTC	1 cut(s)	329
MboII	GAAGA	2 cut(s)	392, 625
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	8 cut(s)	106, 228, 394, 417, 421, 451, 493, 790
MlyI	GAGTC	2 cut(s)	187, 301
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	5 cut(s)	181, 206, 346, 507, 533
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	2 cut(s)	420, 696
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeI	CATATG	1 cut(s)	143
NlaIII	CATG	2 cut(s)	254, 747
NlaIV	GGNNCC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	328, 749
PleI	GAGTC	2 cut(s)	186, 301
PpsI	GAGTC	2 cut(s)	186, 301
PshBI	ATTAAT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	752
RsaI	GTAC	7 cut(s)	63, 389, 464, 662, 679, 781, 800
RsaNI	GTAC	7 cut(s)	62, 388, 463, 661, 678, 780, 799
SaqAI	TTAA	2 cut(s)	420, 696
SatI	GCNGC	2 cut(s)	327, 748
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	187, 301
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	5 cut(s)	198, 294, 788, 800, 807
SfaNI	GCATC	3 cut(s)	26, 156, 256
SfcI	CTRYAG	2 cut(s)	526, 748
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	8 cut(s)	106, 228, 394, 417, 421, 451, 493, 790
SsiI	CCGC	2 cut(s)	327, 344
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	5 cut(s)	83, 155, 203, 280, 812
TaqI	TCGA	1 cut(s)	692
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	8 cut(s)	106, 228, 394, 417, 421, 451, 493, 790
TatI	WGTACW	2 cut(s)	462, 677
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	420, 696
Tru9I	TTAA	2 cut(s)	420, 696
TscAI	CASTG	2 cut(s)	86, 680
TseI	GCWGC	1 cut(s)	747
TspDTI	ATGAA	4 cut(s)	114, 239, 626, 668
TspGWI	ACGGA	3 cut(s)	49, 200, 678
TspRI	CASTG	2 cut(s)	86, 680
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	747
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.