Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

7843536 .. 7844597

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGAAGTTTCTGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACGCCGGCAAAAAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCGTTACGGACACTGCCTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCGAAGAAGACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCAGCATCTGATGCCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTAGCGACTCTTGATGCTCTTAAGAGTAAGGATAAGAAGGTGACTGCTTTAAAGGAAGCTAAGGCTAAGCTTGAGGAACGTTTCAAGACTGGGAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

10.28

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27e	PF01777	52 - 135	3.1e-33	Ribosomal L27e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 163
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	1 cut(s)	28
AcuI	CTGAAG	3 cut(s)	35, 158, 293
AfaI	GTAC	1 cut(s)	146
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	44, 364
AluBI	AGCT	4 cut(s)	220, 338, 349, 397
AluI	AGCT	4 cut(s)	220, 338, 349, 397
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	2 cut(s)	238, 405
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	16, 43, 331
AvaI	CYCGRG	1 cut(s)	148
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	33, 201
BclI	TGATCA	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	268
BlpI	GCTNAGC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	231, 244, 283
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	339, 398
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	99, 373
Bse8I	GATNNNNATC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	99, 373
BshFI	GGCC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	57, 132
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	33, 72, 268
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	2 cut(s)	29, 163
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	99, 373
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	3 cut(s)	33, 72, 268
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	5 cut(s)	172, 339, 345, 393, 398
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	36, 75, 271
BstMBI	GATC	3 cut(s)	33, 72, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	2 cut(s)	75, 118
BtsIMutI	CAGTG	3 cut(s)	75, 106, 118
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	2 cut(s)	238, 405
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	6 cut(s)	48, 220, 338, 344, 349, 397
CviKI_1	RGCY	6 cut(s)	48, 220, 338, 344, 349, 397
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	5 cut(s)	172, 339, 345, 393, 398
DpnI	GATC	3 cut(s)	35, 74, 270
DpnII	GATC	3 cut(s)	33, 72, 268
DraI	TTTAAA	1 cut(s)	330
Eco57I	CTGAAG	3 cut(s)	35, 158, 293
Eco88I	CYCGRG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	72
FokI	GGATG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	57, 132
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	170, 286
HpaII	CCGG	2 cut(s)	57, 132
HphI	GGTGA	3 cut(s)	16, 43, 331
Hpy188I	TCNGA	4 cut(s)	15, 240, 273, 407
Hpy188III	TCNNGA	4 cut(s)	198, 223, 290, 364
Hpy99I	CGWCG	2 cut(s)	111, 131
HpyAV	CCTTC	4 cut(s)	50, 94, 268, 310
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	250, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	5 cut(s)	172, 339, 345, 393, 398
HpySE526I	ACGT	2 cut(s)	250, 358
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	33, 72, 268
LpnPI	CCDG	7 cut(s)	70, 112, 145, 245, 354, 364, 385
LweI	GCATC	3 cut(s)	231, 244, 283
MaeII	ACGT	2 cut(s)	250, 358
MaeIII	GTNAC	5 cut(s)	50, 101, 110, 251, 319
MalI	GATC	3 cut(s)	35, 74, 270
MboI	GATC	3 cut(s)	33, 72, 268
MboII	GAAGA	5 cut(s)	151, 190, 193, 202, 385
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	164, 280
MnlI	CCTC	3 cut(s)	47, 134, 346
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	2 cut(s)	300, 329
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	57, 132
MwoI	GCNNNNNNNGC	1 cut(s)	241
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	33, 72, 268
NgoMIV	GCCGGC	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	101, 319
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	164, 280
PpsI	GAGTC	2 cut(s)	164, 280
Psp1406I	AACGTT	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	97
PstNI	CAGNNNCTG	2 cut(s)	238, 405
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	300, 329
Sau3AI	GATC	3 cut(s)	33, 72, 268
SchI	GAGTC	2 cut(s)	164, 280
SetI	ASST	9 cut(s)	222, 253, 321, 340, 351, 361, 383, 399, 404
SfaNI	GCATC	3 cut(s)	231, 244, 283
SmlI	CTYRAG	2 cut(s)	299, 350
SmoI	CTYRAG	2 cut(s)	299, 350
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	29, 163
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	2 cut(s)	253, 361
TaqI	TCGA	2 cut(s)	87, 261
TasI	AATT	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	300, 329
Tru9I	TTAA	2 cut(s)	300, 329
TscAI	CASTG	3 cut(s)	75, 106, 125
TseFI	GTSAC	2 cut(s)	101, 319
Tsp45I	GTSAC	2 cut(s)	101, 319
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	2 cut(s)	108, 129
TspRI	CASTG	3 cut(s)	75, 106, 125
Vha464I	CTTAAG	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.