Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005823.1

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

14640 .. 15047

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005823.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggtgaagtttttgaagccaaacaaggccgtgatcctcctccagggccgctacgccgggcgcaagggcgtcatcgtcaaggccttcgacgacggcactcgcgaccgcgcctacggccactgcctggtcgccggaatcaagaagtacccgagcaaggtgatccgcaaggactcggccaagaagaccgccaagaagtcgagggtgaagcccttcgtcaagctcgtcaactaccagcatctgatgcccacgcgctacaccctcgacgtggatctcaaggaggtcgtcactcccgacgtgctctccagcaaggacaagaaggtcacggctttgaaggagaccaagaagaggtttgaggagaggttcaagaccggaaagaacaggtggttcttcaccaagctcaggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

135

Amino Acids

15.68

Weight (kDa)

10.42

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccII	CGCG	3 cut(s)	102, 108, 250
AciI	CCGC	4 cut(s)	49, 106, 163, 186
AclWI	GGATC	3 cut(s)	28, 154, 276
AcoI	YGGCCR	2 cut(s)	115, 174
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	6 cut(s)	43, 124, 154, 265, 345, 399
AgsI	TTSAA	3 cut(s)	16, 331, 364
AjiI	CACGTC	2 cut(s)	265, 295
AjnI	CCWGG	2 cut(s)	42, 123
AjuI	GAANNNNNNNTTGG	1 cut(s)	386
AluBI	AGCT	2 cut(s)	220, 397
AluI	AGCT	2 cut(s)	220, 397
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	28, 154, 276
AlwNI	CAGNNNCTG	2 cut(s)	238, 405
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	5 cut(s)	27, 46, 81, 115, 174
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	63, 110, 252
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	4 cut(s)	16, 169, 214, 382
AvaI	CYCGRG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	300
BceAI	ACGGC	4 cut(s)	14, 109, 130, 339
BciT130I	CCWGG	2 cut(s)	44, 125
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	44, 58, 125
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	2 cut(s)	265, 295
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	44, 58, 125
BmsI	GCATC	2 cut(s)	231, 244
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	26, 286
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 124, 154, 265, 345, 399
BseBI	CCWGG	2 cut(s)	44, 125
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	6 cut(s)	43, 124, 154, 265, 345, 399
BseRI	GAGGAG	2 cut(s)	29, 368
Bsh1236I	CGCG	3 cut(s)	102, 108, 250
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	29, 48, 83, 117, 176
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	57, 132, 369
BslI	CCNNNNNNNGG	6 cut(s)	43, 124, 154, 265, 345, 399
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	5 cut(s)	29, 48, 83, 117, 176
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	33, 159, 268
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	4 cut(s)	49, 106, 163, 186
BspANI	GGCC	5 cut(s)	29, 48, 83, 117, 176
BspFNI	CGCG	3 cut(s)	102, 108, 250
BspPI	GGATC	3 cut(s)	28, 154, 276
BspTNI	GGTCTC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	3 cut(s)	33, 159, 268
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	44, 125
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	398
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstFNI	CGCG	3 cut(s)	102, 108, 250
BstHHI	GCGC	3 cut(s)	63, 110, 252
BstKTI	GATC	3 cut(s)	36, 162, 271
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	33, 159, 268
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 241
BstNI	CCWGG	2 cut(s)	44, 125
BstSCI	CCNGG	3 cut(s)	42, 56, 123
BstUI	CGCG	3 cut(s)	102, 108, 250
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	29, 48, 83, 117, 176
BtrI	CACGTC	2 cut(s)	265, 295
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
BtuMI	TCGCGA	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	238, 405
CfoI	GCGC	3 cut(s)	63, 110, 252
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	145
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	3 cut(s)	35, 161, 270
DpnII	GATC	3 cut(s)	33, 159, 268
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	115, 174
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	42, 123
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	3 cut(s)	62, 109, 251
GluI	GCNGC	1 cut(s)	49
GsuI	CTGGAG	2 cut(s)	26, 286
HaeIII	GGCC	5 cut(s)	29, 48, 83, 117, 176
HapII	CCGG	3 cut(s)	57, 132, 369
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	3 cut(s)	63, 110, 252
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	3 cut(s)	61, 108, 250
HinP1I	GCGC	3 cut(s)	61, 108, 250
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	135, 170
HpaII	CCGG	3 cut(s)	57, 132, 369
HphI	GGTGA	4 cut(s)	16, 169, 214, 382
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	240, 407
Hpy188III	TCNNGA	4 cut(s)	101, 139, 290, 364
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	4 cut(s)	92, 95, 266, 296
HpyAV	CCTTC	4 cut(s)	94, 220, 310, 325
HpyCH4IV	ACGT	2 cut(s)	264, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 241
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	264, 294
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	3 cut(s)	61, 108, 250
Kzo9I	GATC	3 cut(s)	33, 159, 268
LweI	GCATC	2 cut(s)	231, 244
MaeII	ACGT	2 cut(s)	264, 294
MaeIII	GTNAC	2 cut(s)	283, 319
MalI	GATC	3 cut(s)	35, 161, 270
MboI	GATC	3 cut(s)	33, 159, 268
MboII	GAAGA	3 cut(s)	193, 355, 379
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	47, 50, 192, 269, 271, 339, 346, 351
MroXI	GAANNNNTTC	1 cut(s)	209
MspI	CCGG	3 cut(s)	57, 132, 369
MspR9I	CCNGG	3 cut(s)	44, 58, 125
MvaI	CCWGG	2 cut(s)	44, 125
MvnI	CGCG	3 cut(s)	102, 108, 250
MwoI	GCNNNNNNNGC	2 cut(s)	114, 241
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	33, 159, 268
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	283, 319
NruI	TCGCGA	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 219, 288
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	42, 123
PspGI	CCWGG	2 cut(s)	42, 123
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	2 cut(s)	238, 405
PsuI	RGATCY	1 cut(s)	268
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	3 cut(s)	33, 159, 268
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	44, 58, 125
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	231, 244
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	4 cut(s)	49, 106, 163, 186
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	42, 56, 123
TaiI	ACGT	2 cut(s)	267, 297
TaqI	TCGA	3 cut(s)	87, 197, 261
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	135
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	283, 319
Tsp45I	GTSAC	2 cut(s)	283, 319
TspRI	CASTG	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.