Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Forward (+)

8571816 .. 8572681

Gene Structure 866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGAAGTTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGTTACGCCGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAACCGTGATCGTCCTTACGGACACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCTAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGCATCTGATGCCTACTCGTTACACACTCGACGTGGATCTCAAGGAAGTGGCGACTCTTGATGCTCTTCAGAGTAAGGATAAGAAGGTTGCTGCTCTTAAGGAAGCTAAGGCTAAGCTTGAGGAGAGGTTCAAAACCGGTAAGAACAGATGGTTCTTTACCAAGCTCAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

10.26

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27e	PF01777	52 - 135	2.7e-33	Ribosomal L27e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	28, 276
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflII	CTTAAG	1 cut(s)	329
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	16, 44, 364
AjiI	CACGTC	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	176, 188, 220, 338, 349, 397
AluI	AGCT	6 cut(s)	176, 188, 220, 338, 349, 397
AlwI	GGATC	2 cut(s)	28, 276
AlwNI	CAGNNNCTG	2 cut(s)	238, 405
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	323
AsiGI	ACCGGT	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	375
BceAI	ACGGC	2 cut(s)	14, 53
BfaI	CTAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	265
BmsI	GCATC	3 cut(s)	231, 244, 283
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	339, 398
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	3 cut(s)	122, 257, 371
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	1 cut(s)	368
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	29
BshTI	ACCGGT	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	57, 132, 369
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	33, 103, 268
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	185
BspPI	GGATC	2 cut(s)	28, 276
BspQI	GCTCTTC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssMI	GATC	3 cut(s)	33, 103, 268
Bst4CI	ACNGT	2 cut(s)	95, 101
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	6 cut(s)	172, 177, 189, 339, 345, 398
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	36, 106, 271
BstMBI	GATC	3 cut(s)	33, 103, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
CaiI	CAGNNNCTG	2 cut(s)	238, 405
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	145
CspAI	ACCGGT	1 cut(s)	368
CviJI	RGCY	9 cut(s)	29, 68, 176, 188, 220, 338, 344, 349, 397
CviKI_1	RGCY	9 cut(s)	29, 68, 176, 188, 220, 338, 344, 349, 397
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	6 cut(s)	172, 177, 189, 339, 345, 398
DpnI	GATC	3 cut(s)	35, 105, 270
DpnII	GATC	3 cut(s)	33, 103, 268
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	57, 132, 369
HindIII	AAGCTT	2 cut(s)	218, 347
HinfI	GANTC	3 cut(s)	135, 170, 286
HpaII	CCGG	3 cut(s)	57, 132, 369
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	240, 303, 407
Hpy188III	TCNNGA	3 cut(s)	13, 139, 290
Hpy99I	CGWCG	4 cut(s)	92, 95, 131, 266
HpyAV	CCTTC	3 cut(s)	47, 94, 310
HpyCH4III	ACNGT	2 cut(s)	95, 101
HpyCH4IV	ACGT	2 cut(s)	49, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	6 cut(s)	172, 177, 189, 339, 345, 398
HpySE526I	ACGT	2 cut(s)	49, 264
Kzo9I	GATC	3 cut(s)	33, 103, 268
LguI	GCTCTTC	1 cut(s)	303
LpnPI	CCDG	5 cut(s)	70, 145, 245, 382, 385
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	3 cut(s)	231, 244, 283
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	49, 264
MaeIII	GTNAC	3 cut(s)	50, 95, 251
MalI	GATC	3 cut(s)	35, 105, 270
MboI	GATC	3 cut(s)	33, 103, 268
MboII	GAAGA	3 cut(s)	32, 193, 290
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	3 cut(s)	129, 164, 280
MnlI	CCTC	3 cut(s)	134, 346, 351
MseI	TTAA	3 cut(s)	204, 225, 330
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	3 cut(s)	57, 132, 369
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	33, 103, 268
PciSI	GCTCTTC	1 cut(s)	303
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	3 cut(s)	129, 164, 280
PpsI	GAGTC	3 cut(s)	129, 164, 280
PspEI	GGTNACC	1 cut(s)	95
PstNI	CAGNNNCTG	2 cut(s)	238, 405
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	204, 225, 330
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	33, 103, 268
SchI	GAGTC	3 cut(s)	129, 164, 280
SfaNI	GCATC	3 cut(s)	231, 244, 283
SmlI	CTYRAG	4 cut(s)	137, 272, 329, 350
SmoI	CTYRAG	4 cut(s)	137, 272, 329, 350
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	95, 101
TaiI	ACGT	2 cut(s)	52, 267
TaqI	TCGA	2 cut(s)	87, 261
TasI	AATT	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	204, 225, 330
Tru9I	TTAA	3 cut(s)	204, 225, 330
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	329
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.