Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

35502688 .. 35503218

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG324800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTCTTCCTCACACCCAATCCAAGGGAGCTTTCTAAGCTTAGAGAGAGGGAGGAACGCTGTCGCCATGGTCAAATTTTTGAAGCCAAACAAGGTCGTTATCCTCCTTCAGGTTCGCTACGGCGGTCGCAAGGGCTGTGGTCCTCCTTTAGGGCTGTGATCCTCTGCCACGCTCTACACTCTCGACGTCGATCTCGAGGTCGTCACCCCGACGTGCTCACCAACAAGGAAAAGAAAGTCACTGCCTTGAAGGAGACCAAGAAGAGGTTTGAGGAGAGGTTCAAGATCGGAAATAACAGAAAGAATAGTGGTTTGAATGTGGATTTGACCGGAAGGAGGTCTGAGGTGACCTTGCAGTTGAGGATAGAGATTCCGGTGTTTTGGTTGGGGTCCCCGCGACCACCGAAGATTTCACTTTTTGAATCAAATTTACATTCGGAGGTCAATTTCTCGATCAATTTTACATTTGGTTCGGCTTTGGTTCCCAATTTCTTCGATTTCTCAAAAATAGGAGGTGTTTCATTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

176

Amino Acids

20.37

Weight (kDa)

11.04

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	190
AccII	CGCG	1 cut(s)	397
AciI	CCGC	2 cut(s)	124, 395
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	75, 427
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	187
AfiI	CCNNNNNNNGG	5 cut(s)	24, 110, 150, 264, 336
AgsI	TTSAA	5 cut(s)	83, 250, 283, 316, 422
AjiI	CACGTC	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	2 cut(s)	31, 40
AluI	AGCT	2 cut(s)	31, 40
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	75, 427
AspS9I	GGNCC	2 cut(s)	141, 390
AsuHPI	GGTGA	3 cut(s)	197, 211, 358
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	141, 390
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	141, 390
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	141, 390
BmiI	GGNNCC	3 cut(s)	391, 392, 483
BsaHI	GRCGYC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	23, 67
BsaWI	WCCGGW	2 cut(s)	329, 373
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 110, 150, 264, 336
Bse3DI	GCAATG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	23, 67
BseLI	CCNNNNNNNGG	5 cut(s)	24, 110, 150, 264, 336
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	397
Bsh1285I	CGRYCG	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	330, 374
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	5 cut(s)	24, 110, 150, 264, 336
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	159, 191, 285, 453
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	124, 395
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	391, 392, 483
BspPI	GGATC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	23, 67
BssMI	GATC	4 cut(s)	159, 191, 285, 453
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	2 cut(s)	23, 67
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	36, 41, 342
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	346
BstENI	CCTNNNNNAGG	2 cut(s)	108, 148
BstFNI	CGCG	1 cut(s)	397
BstKTI	GATC	4 cut(s)	162, 194, 288, 456
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	159, 191, 285, 453
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	141, 390
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	31, 40, 86, 136, 155, 476
CviKI_1	RGCY	6 cut(s)	31, 40, 86, 136, 155, 476
DdeI	CTNAG	3 cut(s)	36, 41, 342
DpnI	GATC	4 cut(s)	161, 193, 287, 455
DpnII	GATC	4 cut(s)	159, 191, 285, 453
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	23, 67
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	141, 390
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	2 cut(s)	108, 148
EcoO109I	RGGNCCY	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	23, 67
ErhI	CCWWGG	2 cut(s)	23, 67
FaeI	CATG	1 cut(s)	71
FaiI	YATR	1 cut(s)	69
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	402
HapII	CCGG	2 cut(s)	330, 374
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	370, 422
HpaII	CCGG	2 cut(s)	330, 374
HphI	GGTGA	3 cut(s)	197, 211, 358
Hpy188I	TCNGA	3 cut(s)	290, 343, 439
Hpy188III	TCNNGA	4 cut(s)	183, 195, 283, 451
Hpy99I	CGWCG	3 cut(s)	189, 192, 215
HpyAV	CCTTC	3 cut(s)	117, 244, 327
HpyCH4IV	ACGT	2 cut(s)	187, 213
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	3 cut(s)	36, 41, 342
HpySE526I	ACGT	2 cut(s)	187, 213
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	71
KflI	GGGWCCC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	159, 191, 285, 453
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	96, 343, 387
MaeII	ACGT	2 cut(s)	187, 213
MaeIII	GTNAC	3 cut(s)	203, 238, 346
MalI	GATC	4 cut(s)	161, 193, 287, 455
MboI	GATC	4 cut(s)	159, 191, 285, 453
MboII	GAAGA	3 cut(s)	274, 418, 484
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	75, 427, 445, 457, 487
MspI	CCGG	2 cut(s)	330, 374
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	159, 191, 285, 453
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	391, 392, 483
NmuCI	GTSAC	3 cut(s)	203, 238, 346
PaeR7I	CTCGAG	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	370, 422
PpuMI	RGGWCCY	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	391, 392, 483
PspPI	GGNCC	2 cut(s)	141, 390
PspPPI	RGGWCCY	1 cut(s)	390
Sau3AI	GATC	4 cut(s)	159, 191, 285, 453
Sau96I	GGNCC	2 cut(s)	141, 390
SduI	GDGCHC	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	141, 390
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	5 cut(s)	75, 427, 445, 457, 487
SsiI	CCGC	2 cut(s)	124, 395
StyI	CCWWGG	2 cut(s)	23, 67
TaiI	ACGT	2 cut(s)	190, 216
TaqI	TCGA	5 cut(s)	184, 190, 196, 452, 495
TasI	AATT	5 cut(s)	75, 427, 445, 457, 487
TfiI	GAWTC	2 cut(s)	370, 422
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	3 cut(s)	203, 238, 346
Tsp45I	GTSAC	3 cut(s)	203, 238, 346
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	141, 390
XagI	CCTNNNNNAGG	2 cut(s)	108, 148
XapI	RAATTY	2 cut(s)	75, 427
XhoI	CTCGAG	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.