Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

31290765 .. 31291172

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGAAGTTCTTGAAACCCAACAAGGCCGTGATCCTTCTCCAAGGTCGCTACGCCGGCCGCAAGGGCGTCATCGTCAAGGCCTTCGACGACGGCACTCGCGACCGCGCCTACGGCCATTGCCTGGTCGCCGGCATCAAGAAGTACCCCAGCAAGGTGATCCGAAAGGACTCGGCGAAGAAGACGGCGAAGAAGTCGAGGGTGAAGCCGTTCGTGAAGCTCGTGAACTACCAGCATCTGATGCCCACGCGCTACACTCTGGACGTGGATCTCAAGGAGGTCGTCACCCCTGACGTGCTCACCAGCAAGGACAAGAAGGTCACCGCCTTGAAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

136

Amino Acids

15.69

Weight (kDa)

10.42

Isoelectric Point (pI)

21.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27e	PF01777	52 - 135	1.9e-34	Ribosomal L27e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccII	CGCG	3 cut(s)	102, 108, 250
AciI	CCGC	3 cut(s)	61, 106, 324
AclWI	GGATC	3 cut(s)	28, 154, 276
AcoI	YGGCCR	2 cut(s)	58, 115
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	4 cut(s)	124, 154, 345, 399
AgsI	TTSAA	3 cut(s)	16, 331, 364
AjiI	CACGTC	2 cut(s)	265, 295
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	3 cut(s)	332, 364, 386
AluBI	AGCT	2 cut(s)	220, 397
AluI	AGCT	2 cut(s)	220, 397
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	28, 154, 276
AlwNI	CAGNNNCTG	2 cut(s)	238, 405
AoxI	GGCC	4 cut(s)	27, 58, 81, 115
Asp700I	GAANNNNTTC	2 cut(s)	209, 347
AspLEI	GCGC	2 cut(s)	110, 252
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	7 cut(s)	16, 169, 214, 277, 292, 313, 382
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	300
BceAI	ACGGC	5 cut(s)	14, 109, 130, 193, 201
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	329
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	125, 370
BmgBI	CACGTC	2 cut(s)	265, 295
BmrFI	CCNGG	2 cut(s)	125, 370
BmsI	GCATC	3 cut(s)	144, 231, 244
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 154, 345, 399
Bse118I	RCCGGY	2 cut(s)	56, 131
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	124, 154, 345, 399
BseMI	GCAATG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	3 cut(s)	102, 108, 250
Bsh1285I	CGRYCG	2 cut(s)	61, 106
BshFI	GGCC	4 cut(s)	29, 60, 83, 117
BsiEI	CGRYCG	2 cut(s)	61, 106
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	57, 132, 369
BslI	CCNNNNNNNGG	4 cut(s)	124, 154, 345, 399
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	4 cut(s)	29, 60, 83, 117
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	33, 159, 268
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	3 cut(s)	61, 106, 324
BspANI	GGCC	4 cut(s)	29, 60, 83, 117
BspFNI	CGCG	3 cut(s)	102, 108, 250
BspPI	GGATC	3 cut(s)	28, 154, 276
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	56, 131
BssAI	RCCGGY	2 cut(s)	56, 131
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	3 cut(s)	33, 159, 268
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	58, 133
BstDEI	CTNAG	1 cut(s)	398
BstEII	GGTNACC	1 cut(s)	319
BstFNI	CGCG	3 cut(s)	102, 108, 250
BstHHI	GCGC	2 cut(s)	110, 252
BstKTI	GATC	3 cut(s)	36, 162, 271
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	33, 159, 268
BstMCI	CGRYCG	2 cut(s)	61, 106
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 114, 241
BstNI	CCWGG	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	123, 368
BstUI	CGCG	3 cut(s)	102, 108, 250
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	4 cut(s)	29, 60, 83, 117
BtrI	CACGTC	2 cut(s)	265, 295
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	58, 133
CaiI	CAGNNNCTG	2 cut(s)	238, 405
CfoI	GCGC	2 cut(s)	110, 252
Cfr10I	RCCGGY	2 cut(s)	56, 131
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	29, 60, 83, 117, 208, 220, 397
CviKI_1	RGCY	7 cut(s)	29, 60, 83, 117, 208, 220, 397
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	3 cut(s)	35, 161, 270
DpnII	GATC	3 cut(s)	33, 159, 268
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	58, 115
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	329
Eco52I	CGGCCG	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
GlaI	GCGC	2 cut(s)	109, 251
GluI	GCNGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	29, 60, 83, 117
HapII	CCGG	3 cut(s)	57, 132, 369
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	110, 252
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	2 cut(s)	108, 250
HinP1I	GCGC	2 cut(s)	108, 250
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	3 cut(s)	57, 132, 369
HphI	GGTGA	7 cut(s)	16, 169, 214, 277, 292, 313, 382
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	164, 240, 407
Hpy188III	TCNNGA	7 cut(s)	13, 101, 139, 214, 223, 260, 364
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	4 cut(s)	47, 94, 310, 325
HpyCH4IV	ACGT	2 cut(s)	264, 294
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 114, 241
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	264, 294
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	2 cut(s)	108, 250
KroI	GCCGGC	2 cut(s)	56, 131
KroNI	GCCGGC	2 cut(s)	58, 133
Kzo9I	GATC	3 cut(s)	33, 159, 268
LweI	GCATC	3 cut(s)	144, 231, 244
MaeII	ACGT	2 cut(s)	264, 294
MaeIII	GTNAC	2 cut(s)	283, 319
MalI	GATC	3 cut(s)	35, 161, 270
MboI	GATC	3 cut(s)	33, 159, 268
MboII	GAAGA	6 cut(s)	190, 193, 202, 355, 379, 385
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	5 cut(s)	192, 271, 339, 346, 351
MroNI	GCCGGC	2 cut(s)	56, 131
MroXI	GAANNNNTTC	2 cut(s)	209, 347
MspI	CCGG	3 cut(s)	57, 132, 369
MspR9I	CCNGG	2 cut(s)	125, 370
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	3 cut(s)	102, 108, 250
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 114, 241
NaeI	GCCGGC	2 cut(s)	58, 133
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	33, 159, 268
NgoMIV	GCCGGC	2 cut(s)	56, 131
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	283, 319
NruI	TCGCGA	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 219
PdiI	GCCGGC	2 cut(s)	58, 133
PdmI	GAANNNNTTC	2 cut(s)	209, 347
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	123
PstNI	CAGNNNCTG	2 cut(s)	238, 405
PsuI	RGATCY	1 cut(s)	268
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	3 cut(s)	33, 159, 268
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	125, 370
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	3 cut(s)	144, 231, 244
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	3 cut(s)	61, 106, 324
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	123, 368
StyI	CCWWGG	1 cut(s)	43
TaiI	ACGT	2 cut(s)	267, 297
TaqI	TCGA	3 cut(s)	87, 197, 351
TauI	GCSGC	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	283, 319
Tsp45I	GTSAC	2 cut(s)	283, 319
Van91I	CCANNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	2 cut(s)	209, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.