Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

20108172 .. 20108943

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G187100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTAAGTTTCTGAAGCCAAACAAGGCCATCATCATCCTCCAGGGCCGCTACGCCGGACGCAAGGCCGTGATCGTTCGCGCCTTCGACGACGGCACTCGCGATCGTCCCTATGGCCACTGTTTGGTTGCGGGGATAAAGAAGTATCCCAGCAAGGTTATCCGCAAGGACTCGGCGAAGAAGACTGCCAAGAAATCCAGGGTAAAGCCCTTCGTCAAGCTCGTGAACTACCAGCACCTCATGCCCACTCGCTACACCCTGGATGTGGATCTCAAGGACGTCGTTAACGTTGAAGCTTTTGCGACCAAGGACAAGAAGGTGACTGCATTGAAGGAGACTAAGAAGCGCTTCGAGGAGCGGTTCAAGACCGGGAAGAACAGGTGGTTCTTCACCAAGCTCAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

136

Amino Acids

15.78

Weight (kDa)

10.47

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	358
AccII	CGCG	2 cut(s)	81, 102
AciI	CCGC	4 cut(s)	49, 131, 163, 358
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	124, 265, 399
AgsI	TTSAA	3 cut(s)	293, 331, 364
AjnI	CCWGG	3 cut(s)	42, 197, 258
AjuI	GAANNNNNNNTTGG	1 cut(s)	386
AluBI	AGCT	3 cut(s)	220, 296, 397
AluI	AGCT	3 cut(s)	220, 296, 397
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	405
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	4 cut(s)	27, 46, 66, 115
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	83, 348
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	331, 382
BalI	TGGCCA	1 cut(s)	117
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	53, 109
BciT130I	CCWGG	3 cut(s)	44, 199, 260
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	44, 199, 260, 370
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	44, 199, 260, 370
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	43, 198, 258, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 265, 399
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	44, 199, 260
BseDI	CCNNGG	4 cut(s)	43, 198, 258, 306
BseGI	GGATG	2 cut(s)	36, 268
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	124, 265, 399
BseRI	GAGGAG	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	81, 102
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	29, 48, 68, 117
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	57, 369
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	124, 265, 399
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	4 cut(s)	29, 48, 68, 117
Bsp143I	GATC	3 cut(s)	72, 103, 268
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	4 cut(s)	49, 131, 163, 358
BspANI	GGCC	4 cut(s)	29, 48, 68, 117
BspFNI	CGCG	2 cut(s)	81, 102
BspPI	GGATC	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	43, 198, 258, 306
BssMI	GATC	3 cut(s)	72, 103, 268
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	44, 199, 260
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	339, 398
BstF5I	GGATG	2 cut(s)	36, 268
BstFNI	CGCG	2 cut(s)	81, 102
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	83, 348
BstKTI	GATC	3 cut(s)	75, 106, 271
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	72, 103, 268
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	3 cut(s)	44, 199, 260
BstSCI	CCNGG	4 cut(s)	42, 197, 258, 368
BstUI	CGCG	2 cut(s)	81, 102
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	29, 48, 68, 117
BtsCI	GGATG	2 cut(s)	36, 268
BtsIMutI	CAGTG	1 cut(s)	118
BtuMI	TCGCGA	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	405
CfoI	GCGC	2 cut(s)	83, 348
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	19, 29, 48, 68, 117, 208, 220, 296, 397
CviKI_1	RGCY	9 cut(s)	19, 29, 48, 68, 117, 208, 220, 296, 397
DdeI	CTNAG	2 cut(s)	339, 398
DpnI	GATC	3 cut(s)	74, 105, 270
DpnII	GATC	3 cut(s)	72, 103, 268
EaeI	YGGCCR	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	306
Eco47III	AGCGCT	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	42, 197, 258
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	114, 242
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	23, 275
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	2 cut(s)	82, 347
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	4 cut(s)	29, 48, 68, 117
HapII	CCGG	2 cut(s)	57, 369
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	83, 348
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	81, 346
HinP1I	GCGC	2 cut(s)	81, 346
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	170
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	57, 369
HphI	GGTGA	2 cut(s)	331, 382
Hpy166II	GTNNAC	2 cut(s)	226, 286
Hpy188I	TCNGA	2 cut(s)	15, 407
Hpy188III	TCNNGA	3 cut(s)	101, 223, 364
Hpy8I	GTNNAC	2 cut(s)	226, 286
Hpy99I	CGWCG	3 cut(s)	92, 95, 284
HpyAV	CCTTC	4 cut(s)	94, 220, 310, 325
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	279, 288
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	339, 398
HpySE526I	ACGT	2 cut(s)	279, 288
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	2 cut(s)	81, 346
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	72, 103, 268
LmnI	GCTCC	1 cut(s)	355
MaeII	ACGT	2 cut(s)	279, 288
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	74, 105, 270
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	3 cut(s)	72, 103, 268
MboII	GAAGA	4 cut(s)	190, 193, 379, 385
MflI	RGATCY	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	50, 248, 346
Mox20I	TGGCCA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	2 cut(s)	6, 285
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	2 cut(s)	57, 369
MspR9I	CCNGG	4 cut(s)	44, 199, 260, 370
MvaI	CCWGG	3 cut(s)	44, 199, 260
MvnI	CGCG	2 cut(s)	81, 102
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	72, 103, 268
NlaIII	CATG	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	319
NruI	TCGCGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 219, 285
PdmI	GAANNNNTTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	50
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	42, 197, 258
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	42, 197, 258
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	106
RruI	TCGCGA	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	6, 285
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	3 cut(s)	72, 103, 268
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	44, 199, 260, 370
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	4 cut(s)	49, 131, 163, 358
StyD4I	CCNGG	4 cut(s)	42, 197, 258, 368
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	282, 291
TaqI	TCGA	2 cut(s)	87, 351
TauI	GCSGC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	6, 285
Tru9I	TTAA	2 cut(s)	6, 285
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	347
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.