FvH4_3g12210

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003801
Physical Location & Seq
Forward (+)
7225257 .. 7225664
408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12210.t1

Sequence Viewer

Length: 408 bp
ATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTGCTCCTACTCCAGGGGAGGTTCGCCGGACGGAAAGCCGTAATCGTGAAGGCCTTCGATGAAGGGACACGTGACCGGCCGTACGGGCACTGCTTGGTCGCCGGAATAGCCAAGTATCCGAGCAAGGTGATCAGGAAAGACTCAGCCAAGAAGACGGCCAAGAAGTCCAGGGTGAAAGCCTTCATCAAGCTCGTCAACTACCAGCACGTGATGCCCACGCGCTACAGCCTCGACGTCGACCTCAAGGAGGTCGCCACCGTCGACGCGTTGCAGTCACGCGACAAGAAGGTGACGGCGGCCAAGGAGATCAAGGCCAAGTTGGAGGACCGGTTCAAGAGTGGCAAGAACCGGTGGTTCTTCACCAAGCTTAGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L27e

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

10.43

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27e PF01777 52 - 135 1.7e-32 Ribosomal L27e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccI GTMKAC 2 cut(s) 267, 291
AccII CGCG 3 cut(s) 250, 296, 309
AciI CCGC 1 cut(s) 326
AcoI YGGCCR 3 cut(s) 107, 186, 327
AcvI CACGTG 2 cut(s) 101, 238
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 43, 277, 399
AflIII ACRYGT 2 cut(s) 98, 294
AgeI ACCGGT 2 cut(s) 357, 378
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 42, 197
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 220, 397
AluI AGCT 2 cut(s) 220, 397
Alw21I GWGCWC 1 cut(s) 36
AoxI GGCC 5 cut(s) 81, 107, 186, 327, 342
AsiGI ACCGGT 2 cut(s) 357, 378
Asp700I GAANNNNTTC 2 cut(s) 83, 209
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 5 cut(s) 16, 169, 214, 331, 382
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 120
BbrPI CACGTG 2 cut(s) 101, 238
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 36
BceAI ACGGC 5 cut(s) 14, 53, 94, 201, 339
BciT130I CCWGG 2 cut(s) 44, 199
BciVI GTATCC 1 cut(s) 156
BclI TGATCA 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 44, 199
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 44, 199
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 2 cut(s) 101, 238
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 43, 198, 330
BsaWI WCCGGW 2 cut(s) 357, 378
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 277, 399
Bse118I RCCGGY 3 cut(s) 105, 357, 378
BseBI CCWGG 2 cut(s) 44, 199
BseDI CCNNGG 3 cut(s) 43, 198, 330
BseLI CCNNNNNNNGG 3 cut(s) 43, 277, 399
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 120
BseX3I CGGCCG 1 cut(s) 107
Bsh1236I CGCG 3 cut(s) 250, 296, 309
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 5 cut(s) 83, 109, 188, 329, 344
BshTI ACCGGT 2 cut(s) 357, 378
BsiEI CGRYCG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 5 cut(s) 57, 106, 132, 358, 379
BsiWI CGTACG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 3 cut(s) 43, 277, 399
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 5 cut(s) 83, 109, 188, 329, 344
Bsp1286I GDGCHC 2 cut(s) 36, 120
Bsp143I GATC 2 cut(s) 159, 336
BspACI CCGC 1 cut(s) 326
BspANI GGCC 5 cut(s) 83, 109, 188, 329, 344
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 3 cut(s) 250, 296, 309
BsrFI RCCGGY 3 cut(s) 105, 357, 378
BssAI RCCGGY 3 cut(s) 105, 357, 378
BssECI CCNNGG 3 cut(s) 43, 198, 330
BssMI GATC 2 cut(s) 159, 336
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 44, 199
Bst4CI ACNGT 1 cut(s) 289
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 241
BstBAI YACGTR 2 cut(s) 101, 238
BstDEI CTNAG 2 cut(s) 172, 398
BstENI CCTNNNNNAGG 2 cut(s) 41, 275
BstFNI CGCG 3 cut(s) 250, 296, 309
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 162, 339
BstMBI GATC 2 cut(s) 159, 336
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 3 cut(s) 115, 137, 241
BstNI CCWGG 2 cut(s) 44, 199
BstSCI CCNGG 2 cut(s) 42, 197
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 3 cut(s) 250, 296, 309
BstV2I GAAGAC 1 cut(s) 188
BstZI CGGCCG 1 cut(s) 107
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 5 cut(s) 83, 109, 188, 329, 344
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 3 cut(s) 105, 357, 378
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 112
CspAI ACCGGT 2 cut(s) 357, 378
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 172, 398
DpnI GATC 2 cut(s) 161, 338
DpnII GATC 2 cut(s) 159, 336
EaeI YGGCCR 3 cut(s) 107, 186, 327
EagI CGGCCG 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 355
Eco52I CGGCCG 1 cut(s) 107
Eco72I CACGTG 2 cut(s) 101, 238
EcoNI CCTNNNNNAGG 2 cut(s) 41, 275
EcoRII CCWGG 2 cut(s) 42, 197
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaqI GGGAC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 2 cut(s) 267, 291
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 5 cut(s) 83, 109, 188, 329, 344
HapII CCGG 5 cut(s) 57, 106, 132, 358, 379
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 264
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 3 cut(s) 226, 268, 292
HindII GTYRAC 3 cut(s) 226, 268, 292
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 170
HpaII CCGG 5 cut(s) 57, 106, 132, 358, 379
HphI GGTGA 5 cut(s) 16, 169, 214, 331, 382
Hpy166II GTNNAC 3 cut(s) 226, 268, 292
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 3 cut(s) 76, 163, 364
Hpy8I GTNNAC 3 cut(s) 226, 268, 292
Hpy99I CGWCG 4 cut(s) 266, 269, 293, 296
HpyAV CCTTC 5 cut(s) 73, 86, 94, 220, 310
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 3 cut(s) 100, 237, 264
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 137, 241
HpyF3I CTNAG 2 cut(s) 172, 398
HpySE526I ACGT 3 cut(s) 100, 237, 264
Hsp92I GRCGYC 1 cut(s) 264
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 336
LmnI GCTCC 1 cut(s) 39
LweI GCATC 1 cut(s) 231
MaeII ACGT 3 cut(s) 100, 237, 264
MaeIII GTNAC 3 cut(s) 101, 303, 319
MalI GATC 2 cut(s) 161, 338
MboI GATC 2 cut(s) 159, 336
MboII GAAGA 2 cut(s) 193, 379
MhlI GDGCHC 2 cut(s) 36, 120
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 6 cut(s) 23, 42, 269, 271, 281, 346
MroXI GAANNNNTTC 2 cut(s) 83, 209
MspI CCGG 5 cut(s) 57, 106, 132, 358, 379
MspR9I CCNGG 2 cut(s) 44, 199
MvaI CCWGG 2 cut(s) 44, 199
MvnI CGCG 3 cut(s) 250, 296, 309
MwoI GCNNNNNNNGC 3 cut(s) 115, 137, 241
NdeII GATC 2 cut(s) 159, 336
NmuCI GTSAC 3 cut(s) 101, 303, 319
PceI AGGCCT 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 2 cut(s) 83, 209
Pfl23II CGTACG 1 cut(s) 111
PinAI ACCGGT 2 cut(s) 357, 378
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 164
PmaCI CACGTG 2 cut(s) 101, 238
PmlI CACGTG 2 cut(s) 101, 238
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 2 cut(s) 101, 238
Psp6I CCWGG 2 cut(s) 42, 197
PspCI CACGTG 2 cut(s) 101, 238
PspGI CCWGG 2 cut(s) 42, 197
PspLI CGTACG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 355
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 2 cut(s) 266, 290
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 2 cut(s) 159, 336
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 44, 199
SduI GDGCHC 2 cut(s) 36, 120
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 253
SgrDI CGTCGACG 1 cut(s) 290
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 2 cut(s) 14, 272
SmoI CTYRAG 2 cut(s) 14, 272
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 326
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 42, 197
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 3 cut(s) 103, 240, 267
TaqI TCGA 4 cut(s) 87, 261, 267, 291
TauI GCSGC 1 cut(s) 329
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 3 cut(s) 101, 303, 319
Tsp45I GTSAC 3 cut(s) 101, 303, 319
TspDTI ATGAA 2 cut(s) 105, 202
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 355
XagI CCTNNNNNAGG 2 cut(s) 41, 275
XmiI GTMKAC 2 cut(s) 267, 291
XmnI GAANNNNTTC 2 cut(s) 83, 209
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.