Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

54175 .. 54558

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggcggtcgcaagggtcgtgatcctctgccacgctctacactctcgacgtggatctcgaggtcgtcaccccgacgtgctaaccagccaggaaaagaaagtcaccgccttgaaggagaccaagaagaggtttgaggagaggttcaagattggaaagaacagtggtctgaatgtggatttgaccgaaaggaggtttgaggtgaccttgcagttgaggataaagattccagtgttttggttgtggtccacgcggccaccgaagatttcaatttttgaatcaattttacattcagaggtcaatttctcgattaattttacatttggttcagctttggttcccaatttcttcaatttctcaaaaatagggggcgtttcattgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

10.74

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AciI	CCGC	3 cut(s)	5, 105, 250
AclWI	GGATC	2 cut(s)	16, 61
AcoI	YGGCCR	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	126, 189
AgsI	TTSAA	5 cut(s)	112, 145, 267, 275, 349
AjiI	CACGTC	2 cut(s)	50, 76
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	16, 61
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	251
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	59, 94, 211
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	2 cut(s)	50, 76
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 189
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	126, 189
BseMI	GCAATG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	126, 189
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	21, 53
BspACI	CCGC	3 cut(s)	5, 105, 250
BspANI	GGCC	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	16, 61
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	21, 53
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	24, 56
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	21, 53
BstMCI	CGRYCG	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	253
BtrI	CACGTC	2 cut(s)	50, 76
BtsIMutI	CAGTG	2 cut(s)	166, 234
Cfr13I	GGNCC	1 cut(s)	243
CviJI	RGCY	3 cut(s)	87, 253, 329
CviKI_1	RGCY	3 cut(s)	87, 253, 329
DpnI	GATC	2 cut(s)	23, 55
DpnII	GATC	2 cut(s)	21, 53
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	223, 275
HphI	GGTGA	3 cut(s)	59, 94, 211
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	168, 292
Hpy188III	TCNNGA	5 cut(s)	19, 45, 57, 145, 304
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	2 cut(s)	51, 77
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	49, 75
HpyCH4V	TGCA	1 cut(s)	208
HpySE526I	ACGT	2 cut(s)	49, 75
Kzo9I	GATC	2 cut(s)	21, 53
LpnPI	CCDG	4 cut(s)	74, 97, 101, 240
MaeII	ACGT	2 cut(s)	49, 75
MaeIII	GTNAC	3 cut(s)	65, 100, 199
MalI	GATC	2 cut(s)	23, 55
MboI	GATC	2 cut(s)	21, 53
MboII	GAAGA	3 cut(s)	136, 271, 337
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	6 cut(s)	267, 279, 298, 310, 340, 349
MnlI	CCTC	9 cut(s)	35, 53, 120, 127, 132, 183, 190, 207, 286
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	250
NdeII	GATC	2 cut(s)	21, 53
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	3 cut(s)	65, 100, 199
PaeR7I	CTCGAG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 55, 254
PfeI	GAWTC	2 cut(s)	223, 275
PkrI	GCNGC	1 cut(s)	252
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	21, 53
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	6 cut(s)	267, 279, 298, 310, 340, 349
SsiI	CCGC	3 cut(s)	5, 105, 250
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	52, 78
TaqI	TCGA	3 cut(s)	46, 58, 305
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	267, 279, 298, 310, 340, 349
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	223, 275
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	166, 234
TseFI	GTSAC	3 cut(s)	65, 100, 199
Tsp45I	GTSAC	3 cut(s)	65, 100, 199
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	166, 234
VpaK11BI	GGWCC	1 cut(s)	243
VspI	ATTAAT	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.