Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000758.1

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Reverse (-)

32320 .. 34544

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000758.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggaacttgataaagaaactatgacgcccgcatcaccggtcaacccagctagaatgaagccaccggcgtcattccccgggaagaattatgaacctcggataaatcagactaacaattcaccaccttcgcatcctccccactacttctttccgtcgccaactcatactggagagaagaacagcgccgccgccatggtgaagtttttgaagccaaacaaggccgtgatcctcctccagggccgctacgccgggcgcaagggcgtcatcgtcaaggccttcgacgacggcactcgcgaccgcgcctacggccactgcctggtcgccggaatcaagaagtacccgagcaaggtgatccgcaaggactcggccaagaagaccgccaagaagtcgagggtgaagcccttcgtcaagctcgtcaactaccagcatctgatgcccacgcgctacaccctcgacgtggatctcaaggaggtcgtcactcccgacgtgctctccagcaaggacaagaaggtcacggctttgaaggagaccaagaagaggtttgaggagaggttcaagaccggaaagaacaggtggttcttcaccaagctcaggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

199

Amino Acids

22.68

Weight (kDa)

10.24

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccII	CGCG	3 cut(s)	294, 300, 442
AciI	CCGC	7 cut(s)	30, 186, 189, 241, 298, 355, 378
AclWI	GGATC	3 cut(s)	220, 346, 468
AcoI	YGGCCR	2 cut(s)	307, 366
AcyI	GRCGYC	3 cut(s)	26, 68, 261
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	6 cut(s)	235, 316, 346, 457, 537, 591
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	208, 523, 556
AjiI	CACGTC	2 cut(s)	457, 487
AjnI	CCWGG	2 cut(s)	234, 315
AjuI	GAANNNNNNNTTGG	1 cut(s)	578
AluBI	AGCT	3 cut(s)	50, 412, 589
AluI	AGCT	3 cut(s)	50, 412, 589
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	220, 346, 468
AlwNI	CAGNNNCTG	2 cut(s)	430, 597
Ama87I	CYCGRG	2 cut(s)	77, 340
AoxI	GGCC	5 cut(s)	219, 238, 273, 307, 366
AsiGI	ACCGGT	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	4 cut(s)	185, 255, 302, 444
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	3 cut(s)	78, 79, 250
AsuHPI	GGTGA	6 cut(s)	27, 111, 208, 361, 406, 574
AvaI	CYCGRG	2 cut(s)	77, 340
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	492
BceAI	ACGGC	4 cut(s)	206, 301, 322, 531
BciT130I	CCWGG	2 cut(s)	236, 317
BcnI	CCSGG	3 cut(s)	78, 79, 250
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	3 cut(s)	186, 189, 241
BlsI	GCNGC	3 cut(s)	187, 190, 242
Bme1390I	CCNGG	5 cut(s)	78, 79, 236, 250, 317
BmeT110I	CYCGRG	2 cut(s)	77, 340
BmgBI	CACGTC	2 cut(s)	457, 487
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	5 cut(s)	78, 79, 236, 250, 317
BmsI	GCATC	4 cut(s)	41, 139, 423, 436
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	3 cut(s)	189, 218, 478
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	3 cut(s)	78, 79, 250
BsaHI	GRCGYC	3 cut(s)	26, 68, 261
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	5 cut(s)	76, 77, 95, 192, 235
BsaWI	WCCGGW	2 cut(s)	37, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 316, 346, 457, 537, 591
Bse118I	RCCGGY	2 cut(s)	37, 64
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	236, 317
BseDI	CCNNGG	5 cut(s)	76, 77, 95, 192, 235
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	6 cut(s)	235, 316, 346, 457, 537, 591
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	221, 560
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	3 cut(s)	294, 300, 442
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	5 cut(s)	221, 240, 275, 309, 368
BshTI	ACCGGT	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	2 cut(s)	77, 340
BsiSI	CCGG	6 cut(s)	38, 65, 78, 249, 324, 561
BslI	CCNNNNNNNGG	6 cut(s)	235, 316, 346, 457, 537, 591
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	5 cut(s)	221, 240, 275, 309, 368
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	2 cut(s)	77, 340
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	3 cut(s)	225, 351, 460
Bsp19I	CCATGG	1 cut(s)	192
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	7 cut(s)	30, 186, 189, 241, 298, 355, 378
BspANI	GGCC	5 cut(s)	221, 240, 275, 309, 368
BspFNI	CGCG	3 cut(s)	294, 300, 442
BspPI	GGATC	3 cut(s)	220, 346, 468
BspTNI	GGTCTC	1 cut(s)	521
BsrFI	RCCGGY	2 cut(s)	37, 64
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	2 cut(s)	37, 64
BssECI	CCNNGG	5 cut(s)	76, 77, 95, 192, 235
BssMI	GATC	3 cut(s)	225, 351, 460
BssNI	GRCGYC	3 cut(s)	26, 68, 261
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	236, 317
Bst6I	CTCTTC	1 cut(s)	530
BstACI	GRCGYC	3 cut(s)	26, 68, 261
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	590
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	3 cut(s)	294, 300, 442
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	4 cut(s)	185, 255, 302, 444
BstKTI	GATC	3 cut(s)	228, 354, 463
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	225, 351, 460
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 433
BstNI	CCWGG	2 cut(s)	236, 317
BstSCI	CCNGG	5 cut(s)	76, 77, 234, 248, 315
BstUI	CGCG	3 cut(s)	294, 300, 442
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	5 cut(s)	221, 240, 275, 309, 368
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	2 cut(s)	457, 487
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	2 cut(s)	430, 597
CfoI	GCGC	4 cut(s)	185, 255, 302, 444
Cfr10I	RCCGGY	2 cut(s)	37, 64
Cfr13I	GGNCC	1 cut(s)	238
Cfr9I	CCCGGG	1 cut(s)	77
CseI	GACGC	3 cut(s)	34, 57, 250
Csp6I	GTAC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	3 cut(s)	227, 353, 462
DpnII	GATC	3 cut(s)	225, 351, 460
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	2 cut(s)	307, 366
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	521
Eco88I	CYCGRG	2 cut(s)	77, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	234, 315
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	23, 90, 165, 194
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	186, 189, 241
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	186, 189, 241
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	4 cut(s)	184, 254, 301, 443
GluI	GCNGC	3 cut(s)	186, 189, 241
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	3 cut(s)	189, 218, 478
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	5 cut(s)	221, 240, 275, 309, 368
HapII	CCGG	6 cut(s)	38, 65, 78, 249, 324, 561
HgaI	GACGC	3 cut(s)	34, 57, 250
HhaI	GCGC	4 cut(s)	185, 255, 302, 444
Hin1I	GRCGYC	3 cut(s)	26, 68, 261
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	4 cut(s)	183, 253, 300, 442
HinP1I	GCGC	4 cut(s)	183, 253, 300, 442
HincII	GTYRAC	2 cut(s)	43, 418
HindII	GTYRAC	2 cut(s)	43, 418
HinfI	GANTC	2 cut(s)	327, 362
HpaII	CCGG	6 cut(s)	38, 65, 78, 249, 324, 561
HphI	GGTGA	6 cut(s)	27, 111, 208, 361, 406, 574
Hpy166II	GTNNAC	2 cut(s)	43, 418
Hpy188I	TCNGA	4 cut(s)	99, 108, 432, 599
Hpy188III	TCNNGA	4 cut(s)	293, 331, 482, 556
Hpy8I	GTNNAC	2 cut(s)	43, 418
Hpy99I	CGWCG	5 cut(s)	157, 284, 287, 458, 488
HpyAV	CCTTC	5 cut(s)	135, 286, 412, 502, 517
HpyCH4IV	ACGT	2 cut(s)	456, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 433
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	2 cut(s)	456, 486
Hsp92I	GRCGYC	3 cut(s)	26, 68, 261
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	4 cut(s)	183, 253, 300, 442
Kzo9I	GATC	3 cut(s)	225, 351, 460
LweI	GCATC	4 cut(s)	41, 139, 423, 436
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	456, 486
MaeIII	GTNAC	2 cut(s)	475, 511
MalI	GATC	3 cut(s)	227, 353, 462
MboI	GATC	3 cut(s)	225, 351, 460
MboII	GAAGA	5 cut(s)	94, 187, 385, 547, 571
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	85, 115
MlyI	GAGTC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	401
MspI	CCGG	6 cut(s)	38, 65, 78, 249, 324, 561
MspR9I	CCNGG	5 cut(s)	78, 79, 236, 250, 317
MvaI	CCWGG	2 cut(s)	236, 317
MvnI	CGCG	3 cut(s)	294, 300, 442
MwoI	GCNNNNNNNGC	2 cut(s)	306, 433
NciI	CCSGG	3 cut(s)	78, 79, 250
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	225, 351, 460
NlaIII	CATG	1 cut(s)	196
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	475, 511
NruI	TCGCGA	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	3 cut(s)	291, 411, 480
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	316
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	187, 190, 242
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	234, 315
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	2 cut(s)	234, 315
PspPI	GGNCC	1 cut(s)	238
PstNI	CAGNNNCTG	2 cut(s)	430, 597
PsuI	RGATCY	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SatI	GCNGC	3 cut(s)	186, 189, 241
Sau3AI	GATC	3 cut(s)	225, 351, 460
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	5 cut(s)	78, 79, 236, 250, 317
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	4 cut(s)	41, 139, 423, 436
SgrAI	CRCCGGYG	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	85, 115
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	7 cut(s)	30, 186, 189, 241, 298, 355, 378
SspMI	CTAG	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	5 cut(s)	76, 77, 234, 248, 315
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	459, 489
TaqI	TCGA	3 cut(s)	279, 389, 453
TasI	AATT	2 cut(s)	85, 115
TauI	GCSGC	3 cut(s)	188, 191, 243
TfiI	GAWTC	1 cut(s)	327
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	2 cut(s)	475, 511
Tsp45I	GTSAC	2 cut(s)	475, 511
TspDTI	ATGAA	2 cut(s)	71, 105
TspGWI	ACGGA	1 cut(s)	141
TspMI	CCCGGG	1 cut(s)	77
TspRI	CASTG	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	316
XagI	CCTNNNNNAGG	1 cut(s)	233
XmaI	CCCGGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.