Prupe.4G110800_v2.0.a1

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0003801
Physical Location & Seq
Forward (+)
5883465 .. 5884081
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G110800.1

Sequence Viewer

Length: 408 bp
ATGGTGAAATTTCTCAAGGCAAACAAAGCGGTGGTGCTCCTGCAGGGACGATACGCGGGGAGGAAAGCCGTGATCGTGAAATCCTTCGAGGAAGGGACACGTGACAGGCCGTACGGGCACTGTTTGGTTGCGGGGATAGCCAAGTACCCGAGCAAGGTGATCAGAAAGGACTCGGCGAAGAAGACGGCGAAGAAGTCCCGGGTCAAGGCCTTCGTGAAGCTCGTGAACTACCAGCACGTGATGCCGACGCGCTACAACCTGGACGTCGACCTGAAGGAGGTGCTCACGGTGGACGCGTTGCAGACACGCGACAAGAAGGTGGCGGCGAAGAAGGAGATCAAGGCCCGGTTGGAGGACCGGTTCAAGAGTGGCAAGAACCGGTGGTTCTTTACCAAGCTTAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L27e

Protein Analysis

136

Amino Acids

15.59

Weight (kDa)

10.45

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 267
AccII CGCG 4 cut(s) 56, 250, 296, 309
AciI CCGC 4 cut(s) 29, 56, 131, 323
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 293
AcvI CACGTG 2 cut(s) 101, 238
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 113, 146
AfiI CCNNNNNNNGG 5 cut(s) 154, 205, 277, 352, 399
AflIII ACRYGT 2 cut(s) 98, 294
AgeI ACCGGT 2 cut(s) 357, 378
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 1 cut(s) 386
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 220, 397
AluI AGCT 2 cut(s) 220, 397
Alw21I GWGCWC 2 cut(s) 39, 285
Ama87I CYCGRG 2 cut(s) 148, 198
AoxI GGCC 3 cut(s) 107, 207, 342
ApoI RAATTY 1 cut(s) 8
AsiGI ACCGGT 2 cut(s) 357, 378
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 343, 355
AsuC2I CCSGG 3 cut(s) 199, 200, 346
AsuHPI GGTGA 2 cut(s) 16, 169
AvaI CYCGRG 2 cut(s) 148, 198
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 120
BauI CACGAG 1 cut(s) 221
BbrPI CACGTG 2 cut(s) 101, 238
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 39, 285
BceAI ACGGC 3 cut(s) 53, 94, 201
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 3 cut(s) 199, 200, 346
BfmI CTRYAG 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 4 cut(s) 199, 200, 260, 346
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 2 cut(s) 148, 198
BmgT120I GGNCC 2 cut(s) 343, 355
BmrFI CCNGG 4 cut(s) 199, 200, 260, 346
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 3 cut(s) 199, 200, 346
BsaAI YACGTR 2 cut(s) 101, 238
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 357, 378
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 5 cut(s) 154, 205, 277, 352, 399
Bse118I RCCGGY 2 cut(s) 357, 378
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 154, 205, 277, 352, 399
BseSI GKGCMC 1 cut(s) 120
Bsh1236I CGCG 4 cut(s) 56, 250, 296, 309
BshFI GGCC 3 cut(s) 109, 209, 344
BshTI ACCGGT 2 cut(s) 357, 378
BsiHKAI GWGCWC 2 cut(s) 39, 285
BsiHKCI CYCGRG 2 cut(s) 148, 198
BsiSI CCGG 4 cut(s) 199, 346, 358, 379
BsiWI CGTACG 1 cut(s) 111
BslFI GGGAC 3 cut(s) 60, 109, 181
BslI CCNNNNNNNGG 5 cut(s) 154, 205, 277, 352, 399
BsmFI GGGAC 3 cut(s) 60, 109, 181
BsnI GGCC 3 cut(s) 109, 209, 344
BsoBI CYCGRG 2 cut(s) 148, 198
Bsp1286I GDGCHC 3 cut(s) 39, 120, 285
Bsp143I GATC 3 cut(s) 72, 159, 336
BspACI CCGC 4 cut(s) 29, 56, 131, 323
BspANI GGCC 3 cut(s) 109, 209, 344
BspFNI CGCG 4 cut(s) 56, 250, 296, 309
BspMAI CTGCAG 1 cut(s) 45
BsrFI RCCGGY 2 cut(s) 357, 378
BssAI RCCGGY 2 cut(s) 357, 378
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 72, 159, 336
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 122, 289
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 241
BstBAI YACGTR 2 cut(s) 101, 238
BstDEI CTNAG 1 cut(s) 398
BstENI CCTNNNNNAGG 1 cut(s) 275
BstFNI CGCG 4 cut(s) 56, 250, 296, 309
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 3 cut(s) 75, 162, 339
BstMBI GATC 3 cut(s) 72, 159, 336
BstMWI GCNNNNNNNGC 4 cut(s) 26, 115, 137, 241
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 197, 198, 258, 344
BstSFI CTRYAG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 4 cut(s) 56, 250, 296, 309
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 109, 209, 344
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 2 cut(s) 357, 378
Cfr13I GGNCC 2 cut(s) 343, 355
Cfr9I CCCGGG 1 cut(s) 198
CseI GACGC 2 cut(s) 256, 302
Csp6I GTAC 2 cut(s) 112, 145
CspAI ACCGGT 2 cut(s) 357, 378
CviJI RGCY 7 cut(s) 68, 109, 140, 209, 220, 344, 397
CviKI_1 RGCY 7 cut(s) 68, 109, 140, 209, 220, 344, 397
CviQI GTAC 2 cut(s) 112, 145
DdeI CTNAG 1 cut(s) 398
DpnI GATC 3 cut(s) 74, 161, 338
DpnII GATC 3 cut(s) 72, 159, 336
Eco147I AGGCCT 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 293
Eco72I CACGTG 2 cut(s) 101, 238
Eco88I CYCGRG 2 cut(s) 148, 198
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 258
FaqI GGGAC 3 cut(s) 60, 109, 181
FauI CCCGC 2 cut(s) 49, 124
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 3 cut(s) 109, 209, 344
HapII CCGG 4 cut(s) 199, 346, 358, 379
HgaI GACGC 2 cut(s) 256, 302
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 264
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 170
HpaII CCGG 4 cut(s) 199, 346, 358, 379
HphI GGTGA 2 cut(s) 16, 169
Hpy166II GTNNAC 3 cut(s) 226, 268, 292
Hpy188I TCNGA 2 cut(s) 164, 407
Hpy188III TCNNGA 4 cut(s) 76, 214, 223, 364
Hpy8I GTNNAC 3 cut(s) 226, 268, 292
Hpy99I CGWCG 2 cut(s) 250, 269
HpyAV CCTTC 6 cut(s) 86, 94, 220, 268, 310, 325
HpyCH4III ACNGT 2 cut(s) 122, 289
HpyCH4IV ACGT 3 cut(s) 100, 237, 264
HpyCH4V TGCA 2 cut(s) 43, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 115, 137, 241
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 3 cut(s) 100, 237, 264
Hsp92I GRCGYC 1 cut(s) 264
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 72, 159, 336
LmnI GCTCC 1 cut(s) 42
LweI GCATC 1 cut(s) 231
MaeII ACGT 3 cut(s) 100, 237, 264
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 74, 161, 338
MboI GATC 3 cut(s) 72, 159, 336
MboII GAAGA 4 cut(s) 190, 193, 202, 340
MhlI GDGCHC 3 cut(s) 39, 120, 285
MluCI AATT 1 cut(s) 8
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 4 cut(s) 54, 82, 271, 346
MroXI GAANNNNTTC 1 cut(s) 83
MspI CCGG 4 cut(s) 199, 346, 358, 379
MspR9I CCNGG 4 cut(s) 199, 200, 260, 346
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 4 cut(s) 56, 250, 296, 309
MwoI GCNNNNNNNGC 4 cut(s) 26, 115, 137, 241
NciI CCSGG 3 cut(s) 199, 200, 346
NdeII GATC 3 cut(s) 72, 159, 336
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 293
PdmI GAANNNNTTC 1 cut(s) 83
Pfl23II CGTACG 1 cut(s) 111
PinAI ACCGGT 2 cut(s) 357, 378
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 164
PmaCI CACGTG 2 cut(s) 101, 238
PmlI CACGTG 2 cut(s) 101, 238
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 2 cut(s) 101, 238
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 2 cut(s) 101, 238
PspGI CCWGG 1 cut(s) 258
PspLI CGTACG 1 cut(s) 111
PspPI GGNCC 2 cut(s) 343, 355
PstI CTGCAG 1 cut(s) 45
RsaI GTAC 2 cut(s) 113, 146
RsaNI GTAC 2 cut(s) 112, 145
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 3 cut(s) 72, 159, 336
Sau96I GGNCC 2 cut(s) 343, 355
SbfI CCTGCAGG 1 cut(s) 45
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 4 cut(s) 199, 200, 260, 346
SdaI CCTGCAGG 1 cut(s) 45
SduI GDGCHC 3 cut(s) 39, 120, 285
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 355
SmaI CCCGGG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse8387I CCTGCAGG 1 cut(s) 45
Sse9I AATT 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 4 cut(s) 29, 56, 131, 323
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 4 cut(s) 197, 198, 258, 344
TaaI ACNGT 2 cut(s) 122, 289
TaiI ACGT 3 cut(s) 103, 240, 267
TaqI TCGA 2 cut(s) 87, 267
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 326
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 198
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 355
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 1 cut(s) 8
XmaI CCCGGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 83
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.