Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003801

Physical Location & Seq

Genomic Coordinates Forward (+)

360722 .. 361947

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG004200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTCAAACTTTTGAAGCCAAATAAGGTCTTGACCCTCCTTCAGGGTCCTTACGGCGGTCGCAAGGGTCGTGATCCTCCTTCAAGGTCCCTACGGCGGTCGCAAGGGTCGTGTTCCTCCTTTAGGGTCATGATCCTTTGCCACGCTCTACACTCTCGACGTGGATCTCGAGGTCGTCACCCCGACTTGCTAACCAGCCAGGAAAAGAAAGTCACCGCCTTGAAGGAGACCAAGAAGAGGTTTGAGGAGAGGTTCAAGATTGGAAAGAACAGTGGTCTGAATGTGGATTTGACCGAAAAGAGGTTTGAGGTGACCTTGCAGTTAAGGATAAAGATTCCGGTGTTTTGGTTGTGGTCCACGCGGCCACCGAAGATTTCAATTTTTGAATCAATTTTACATTCAGAGTTGGCTTCAGTAGTTGCTTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

143

Amino Acids

16.38

Weight (kDa)

11.02

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32220 AT3G22230 AT4G15000 AT4G15000
fragaria_vesca	FvH4_3g12210 FvH4_5g11610 FvH4_6g39630
malus_domestica	MD07G1202500.v1.1 MD09G1137700.v1.1 MD17G1128200.v1.1
prunus_persica	Prupe.3G187100_v2.0.a1 Prupe.4G110800_v2.0.a1
pyrus_communis	pycom17g12040
rosa_chinensis	RchiOBHm_Chr2g0153681 RchiOBHm_Chr5g0019991
rosa_laevigata	RLG00000020720 RLG00000032491
rosa_multiflora	Rmu_sc0000758.1_g000008 Rmu_sc0005310.1_g000009 Rmu_sc0005823.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058200 Rroxscaffold_6G00402360
rosa_rugosa	Rorug02G0441300 Rorug05G0056100
rosa_samantha	Rh2AG504400 Rh2BG515100 Rh2CG490300 Rh2DG527200 Rh5BG145700 Rh5DG145200 Rh7CG324800 Rh7DG004200
rosa_wichuraiana	Rw2G041450 Rw5G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	361
AciI	CCGC	4 cut(s)	57, 97, 216, 361
AclWI	GGATC	3 cut(s)	68, 127, 172
AcoI	YGGCCR	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	26, 396
AfiI	CCNNNNNNNGG	6 cut(s)	43, 56, 96, 123, 237, 300
AgsI	TTSAA	7 cut(s)	16, 84, 223, 256, 378, 386, 427
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	68, 127, 172
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	47, 87, 354
AsuHPI	GGTGA	3 cut(s)	170, 205, 322
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	47, 87, 354
BceAI	ACGGC	2 cut(s)	70, 110
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	3 cut(s)	47, 87, 354
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	47, 87, 354
BmiI	GGNNCC	2 cut(s)	48, 89
BmrFI	CCNGG	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 56, 96, 123, 237, 300
BseBI	CCWGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	6 cut(s)	43, 56, 96, 123, 237, 300
BseRI	GAGGAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	2 cut(s)	61, 101
BshFI	GGCC	1 cut(s)	364
BsiEI	CGRYCG	2 cut(s)	61, 101
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	6 cut(s)	43, 56, 96, 123, 237, 300
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	73, 132, 164
BspACI	CCGC	4 cut(s)	57, 97, 216, 361
BspANI	GGCC	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	48, 89
BspPI	GGATC	3 cut(s)	68, 127, 172
BspTNI	GGTCTC	1 cut(s)	221
BssMI	GATC	3 cut(s)	73, 132, 164
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	230
BstEII	GGTNACC	1 cut(s)	310
BstENI	CCTNNNNNAGG	2 cut(s)	41, 121
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	3 cut(s)	76, 135, 167
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	73, 132, 164
BstMCI	CGRYCG	2 cut(s)	61, 101
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	364
BtrI	CACGTC	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	47, 87, 354
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	19, 198, 364, 410
CviKI_1	RGCY	4 cut(s)	19, 198, 364, 410
DpnI	GATC	3 cut(s)	75, 134, 166
DpnII	GATC	3 cut(s)	73, 132, 164
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	47, 87, 354
Eco57I	CTGAAG	2 cut(s)	26, 396
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	2 cut(s)	41, 121
EcoO109I	RGGNCCY	2 cut(s)	47, 87
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	133
FaiI	YATR	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	2 cut(s)	334, 386
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	3 cut(s)	170, 205, 322
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	279, 403
Hpy188III	TCNNGA	6 cut(s)	31, 71, 130, 156, 168, 256
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	50, 90, 217
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	73, 132, 164
LpnPI	CCDG	5 cut(s)	29, 185, 208, 212, 351
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	176, 211, 310
MalI	GATC	3 cut(s)	75, 134, 166
MboI	GATC	3 cut(s)	73, 132, 164
MboII	GAAGA	2 cut(s)	247, 382
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	2 cut(s)	378, 390
MnlI	CCTC	9 cut(s)	47, 87, 127, 164, 231, 238, 243, 294, 301
MseI	TTAA	1 cut(s)	323
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	361
NdeII	GATC	3 cut(s)	73, 132, 164
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	48, 89
NmuCI	GTSAC	3 cut(s)	176, 211, 310
PaeR7I	CTCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	4 cut(s)	67, 107, 166, 365
PfeI	GAWTC	2 cut(s)	334, 386
PkrI	GCNGC	1 cut(s)	363
PpuMI	RGGWCCY	2 cut(s)	47, 87
Psp5II	RGGWCCY	2 cut(s)	47, 87
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	48, 89
PspPI	GGNCC	3 cut(s)	47, 87, 354
PspPPI	RGGWCCY	2 cut(s)	47, 87
PsuI	RGATCY	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	3 cut(s)	73, 132, 164
Sau96I	GGNCC	3 cut(s)	47, 87, 354
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	9 cut(s)	30, 89, 163, 175, 242, 254, 305, 312, 317
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	47, 87, 354
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	378, 390
SsiI	CCGC	4 cut(s)	57, 97, 216, 361
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	157, 169
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	378, 390
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	2 cut(s)	334, 386
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	3 cut(s)	176, 211, 310
Tsp45I	GTSAC	3 cut(s)	176, 211, 310
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	3 cut(s)	47, 87, 354
XagI	CCTNNNNNAGG	2 cut(s)	41, 121
XhoI	CTCGAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.