Rorug05G0056100

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003801
Physical Location & Seq
Forward (+)
4936620 .. 4940839
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0056100.1

Sequence Viewer

Length: 1320 bp
ATGAGTAGCACCGGGCAAGGTGGACCCCACTCACTGGCCTTCAGGGTGATGCGTCTCTGCAAGCCTTCATTCCAGGTGGACTCCATTCCGCTCCTGCTCGACCCCGCCGATCTCCTCGTCGGCGAGGACATCTTCGACGACCCGGTCGCCGCCGCCCAGGTCCCTCGCCTCCTCGACAGCCACGTGTCCTCCCCCGACTCCTCCGATCCCAGCTACCGCACCAGATTGCTCCTCCACCACCCCTCCGACTCCATCGGCGTCTCCGGCCTCCTCGTCCTCCCCCAAGCCTTCGGAGCAATTTACTTAGGGGAGACGTTTTGTAGCTACATTAGCATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATTATCAAGGCGGAGATGCAAACAGAGAGGCAGAGGCTTGTGCTGTTGGAGACGTCGAAATCGCCGGTTGAGTCCATTCGTGCCGGAGGGCGTTATGACTTCATTGTTGAGCATGATGTGAAGGAACTCGGAGCTCACACGTTGGTGTGTACTGCATTGTACAATGATGGTGATGGCGAGCGTAAATATCTACCGCAATTCTTCAAATTCATTGTGGCAAATCCTCTTTCGGTCCGGACTAAGGTCCGCATTGTTAAGGAAACTACCTTTTTAGAAGCTTGCATTGAAAATCATACGAAATCAAATCTTTTTATGGACCAAGTTGAGTTTGAGCCTGCTGGGCATTGGGGTGCAAAACTTCTAAAAGCTGATGAACACCATTCTGAGGCAAAATCTCAAACAAGAGAGATGTTTAAGCCACCAGTTCTCATCAGATCTGGCGGAGGAGTTCGTAACTATCTTTATCAGTTAATATCACATGGCTCTGCCCAAACGAAAGTGGAGGGAAGCAATATTCTTGGTAAACTTCAGATAACGTGGCGAACAAATCTGGGTGAACCTGGTCGCCTACAAACACAACAAATTATGGGCACTCCCATAACACGAAAGGATATTGAGTTGCAAGTTGTGGAGATACCATCTGGCATCAAATTGGAAAGACCCTTTTTGCTACACTTAAAATTAGCAAATGAGACAGAAAAAGAACTTGGCCCTTTTGAAGTTTCTTTATCACAAGATGATTCACGTGAGGAGAAGGTTGTCGTGATTAATGGTCTTCAAACTGTGGTATTTCCGAGTATTGAAGCATTTGGTTCCAAGGAATTTCATCTGAACCTCATTGCTACCAAACTTGGAGTTCAGAAGATCACAGGCATTACCGTTTTAAATACAATGGAGAGGAAATCATACGACCCTTTGCCAGATGTAGAGATATTTGTGGATCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L27e

Protein Analysis

439

Amino Acids

48.89

Weight (kDa)

5.69

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 10 - 195 7.6e-37 Trafficking protein particle complex subunit 13, N-terminal
TRAPPC13_M PF23647 199 - 318 3e-21 Trafficking protein particle complex subunit 13, middle domain
TRAPPC13_C PF23643 336 - 427 2.2e-11 Trafficking protein particle complex subunit 13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 91
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 616, 810
AclWI GGATC 2 cut(s) 200, 1317
AcsI RAATTY 2 cut(s) 575, 1190
AcuI CTGAAG 2 cut(s) 25, 881
AcvI CACGTG 2 cut(s) 184, 1115
AcyI GRCGYC 2 cut(s) 258, 422
AfaI GTAC 2 cut(s) 520, 530
AfiI CCNNNNNNNGG 3 cut(s) 34, 610, 754
AflIII ACRYGT 2 cut(s) 183, 507
AgsI TTSAA 5 cut(s) 574, 656, 1088, 1148, 1172
AjnI CCWGG 3 cut(s) 72, 156, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
AluI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 5 cut(s) 59, 265, 305, 413, 1055
AlwI GGATC 2 cut(s) 200, 1317
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 3 cut(s) 36, 265, 1078
ApoI RAATTY 2 cut(s) 575, 1190
AseI ATTAAT 1 cut(s) 1137
AspS9I GGNCC 6 cut(s) 23, 160, 601, 613, 685, 1079
AsuC2I CCSGG 2 cut(s) 13, 143
AsuHPI GGTGA 3 cut(s) 58, 551, 935
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 5 cut(s) 23, 160, 601, 613, 685
BaeGI GKGCMC 1 cut(s) 962
BanII GRGCYC 1 cut(s) 505
BbrPI CACGTG 2 cut(s) 184, 1115
BbsI GAAGAC 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 505
BccI CCATC 4 cut(s) 260, 530, 536, 1015
BciT130I CCWGG 3 cut(s) 74, 158, 930
BcnI CCSGG 2 cut(s) 13, 143
BcoDI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BglI GCCNNNNNGGC 1 cut(s) 709
BglII AGATCT 1 cut(s) 803
BisI GCNGC 2 cut(s) 150, 153
BlsI GCNGC 2 cut(s) 151, 154
Bme1390I CCNGG 5 cut(s) 13, 74, 143, 158, 930
Bme18I GGWCC 5 cut(s) 23, 160, 601, 613, 685
BmgT120I GGNCC 6 cut(s) 23, 160, 601, 613, 685, 1079
BmiI GGNNCC 3 cut(s) 25, 162, 1183
BmrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
BmsI GCATC 4 cut(s) 39, 342, 375, 1023
BoxI GACNNNNGTC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 13, 143
BsaAI YACGTR 2 cut(s) 184, 1115
BsaHI GRCGYC 2 cut(s) 258, 422
BsaJI CCNNGG 2 cut(s) 156, 1185
BsaWI WCCGGW 1 cut(s) 603
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 610, 754
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 39, 791
Bse3DI GCAATG 1 cut(s) 1206
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 3 cut(s) 74, 158, 930
BseDI CCNNGG 2 cut(s) 156, 1185
BseLI CCNNNNNNNGG 3 cut(s) 34, 610, 754
BseMI GCAATG 1 cut(s) 1206
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 2 cut(s) 39, 791
BseRI GAGGAG 7 cut(s) 104, 161, 190, 221, 260, 828, 1133
BseSI GKGCMC 1 cut(s) 962
BseYI CCCAGC 2 cut(s) 209, 707
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 38, 267, 1080
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 6 cut(s) 12, 143, 264, 434, 453, 604
BslFI GGGAC 2 cut(s) 146, 377
BslI CCNNNNNNNGG 3 cut(s) 34, 610, 754
BsmAI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BsmBI CGTCTC 4 cut(s) 59, 265, 305, 413
BsmFI GGGAC 2 cut(s) 146, 377
BsnI GGCC 3 cut(s) 38, 267, 1080
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 505, 962
Bsp13I TCCGGA 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 5 cut(s) 109, 205, 803, 1233, 1309
BspACI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 616, 810
BspANI GGCC 3 cut(s) 38, 267, 1080
BspCNI CTCAG 1 cut(s) 745
BspEI TCCGGA 1 cut(s) 603
BspLI GGNNCC 3 cut(s) 25, 162, 1183
BspPI GGATC 2 cut(s) 200, 1317
BspT104I TTCGAA 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 1206
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 2 cut(s) 39, 791
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 156, 1185
BssMI GATC 5 cut(s) 109, 205, 803, 1233, 1309
BssNI GRCGYC 2 cut(s) 258, 422
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 3 cut(s) 74, 158, 930
Bst4CI ACNGT 2 cut(s) 1153, 1249
BstACI GRCGYC 2 cut(s) 258, 422
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 2 cut(s) 184, 1115
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 62, 548, 649, 705
BstDEI CTNAG 3 cut(s) 304, 609, 753
BstKTI GATC 5 cut(s) 112, 208, 806, 1236, 1312
BstMAI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BstMBI GATC 5 cut(s) 109, 205, 803, 1233, 1309
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
BstNI CCWGG 3 cut(s) 74, 158, 930
BstPAI GACNNNNGTC 1 cut(s) 611
BstSCI CCNGG 5 cut(s) 11, 72, 141, 156, 928
BstSLI GKGCMC 1 cut(s) 962
BstV2I GAAGAC 1 cut(s) 1136
BstX2I RGATCY 2 cut(s) 803, 1309
BstYI RGATCY 2 cut(s) 803, 1309
BsuRI GGCC 3 cut(s) 38, 267, 1080
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 4 cut(s) 62, 548, 649, 705
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 6 cut(s) 23, 160, 601, 613, 685, 1079
CpoI CGGWCCG 1 cut(s) 601
CseI GACGC 2 cut(s) 41, 247
CsiI ACCWGGT 1 cut(s) 928
Csp6I GTAC 2 cut(s) 519, 529
CspI CGGWCCG 1 cut(s) 601
CviAII CATG 2 cut(s) 482, 848
CviQI GTAC 2 cut(s) 519, 529
DdeI CTNAG 3 cut(s) 304, 609, 753
DpnI GATC 5 cut(s) 111, 207, 805, 1235, 1311
DpnII GATC 5 cut(s) 109, 205, 803, 1233, 1309
DraI TTTAAA 1 cut(s) 1254
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EciI GGCGGA 2 cut(s) 395, 825
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 1185
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 5 cut(s) 23, 160, 601, 613, 685
Eco53kI GAGCTC 1 cut(s) 503
Eco57I CTGAAG 2 cut(s) 25, 881
Eco72I CACGTG 2 cut(s) 184, 1115
EcoICRI GAGCTC 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 3 cut(s) 72, 156, 928
EcoT14I CCWWGG 1 cut(s) 1185
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 1185
Esp3I CGTCTC 4 cut(s) 59, 265, 305, 413
FaeI CATG 2 cut(s) 485, 851
FaiI YATR 8 cut(s) 465, 483, 663, 683, 849, 956, 968, 1276
FaqI GGGAC 2 cut(s) 146, 377
FatI CATG 2 cut(s) 481, 847
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 150, 153
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 2 cut(s) 150, 153
GluI GCNGC 2 cut(s) 150, 153
GsaI CCCAGC 2 cut(s) 213, 711
HaeIII GGCC 3 cut(s) 38, 267, 1080
HapII CCGG 6 cut(s) 12, 143, 264, 434, 453, 604
HgaI GACGC 2 cut(s) 41, 247
Hin1I GRCGYC 2 cut(s) 258, 422
Hin1II CATG 2 cut(s) 485, 851
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 5 cut(s) 80, 197, 248, 440, 1109
HpaII CCGG 6 cut(s) 12, 143, 264, 434, 453, 604
HphI GGTGA 3 cut(s) 58, 551, 935
Hpy166II GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy188III TCNNGA 3 cut(s) 604, 1132, 1313
Hpy8I GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy99I CGWCG 3 cut(s) 122, 140, 427
HpyAV CCTTC 5 cut(s) 49, 75, 298, 484, 1117
HpyCH4III ACNGT 2 cut(s) 1153, 1249
HpyCH4IV ACGT 6 cut(s) 183, 314, 422, 509, 905, 1114
HpyCH4V TGCA 6 cut(s) 60, 388, 524, 651, 722, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
HpyF3I CTNAG 3 cut(s) 304, 609, 753
HpySE526I ACGT 6 cut(s) 183, 314, 422, 509, 905, 1114
Hsp92I GRCGYC 2 cut(s) 258, 422
Hsp92II CATG 2 cut(s) 485, 851
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 5 cut(s) 109, 205, 803, 1233, 1309
LmnI GCTCC 5 cut(s) 96, 234, 293, 350, 500
LweI GCATC 4 cut(s) 39, 342, 375, 1023
MabI ACCWGGT 1 cut(s) 928
MaeII ACGT 6 cut(s) 183, 314, 422, 509, 905, 1114
MaeIII GTNAC 1 cut(s) 821
MalI GATC 5 cut(s) 111, 207, 805, 1235, 1311
MbiI CCGCTC 1 cut(s) 91
MboI GATC 5 cut(s) 109, 205, 803, 1233, 1309
MboII GAAGA 4 cut(s) 124, 562, 1136, 1243
MflI RGATCY 2 cut(s) 803, 1309
MhlI GDGCHC 2 cut(s) 505, 962
MluCI AATT 8 cut(s) 297, 349, 566, 575, 951, 1019, 1049, 1190
MlyI GAGTC 4 cut(s) 74, 191, 242, 449
MmeI TCCRAC 2 cut(s) 270, 396
MroI TCCGGA 1 cut(s) 603
MseI TTAA 6 cut(s) 624, 783, 839, 1046, 1137, 1253
MslI CAYNNNNRTG 2 cut(s) 512, 717
MspI CCGG 6 cut(s) 12, 143, 264, 434, 453, 604
MspR9I CCNGG 5 cut(s) 13, 74, 143, 158, 930
MvaI CCWGG 3 cut(s) 74, 158, 930
MwoI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
NciI CCSGG 2 cut(s) 13, 143
NdeII GATC 5 cut(s) 109, 205, 803, 1233, 1309
NlaIII CATG 2 cut(s) 485, 851
NlaIV GGNNCC 3 cut(s) 25, 162, 1183
NspV TTCGAA 1 cut(s) 354
OliI CACNNNNGTG 1 cut(s) 512
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 180
PfeI GAWTC 1 cut(s) 1109
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 151, 154
PleI GAGTC 4 cut(s) 74, 191, 242, 448
PmaCI CACGTG 2 cut(s) 184, 1115
PmlI CACGTG 2 cut(s) 184, 1115
PpsI GAGTC 4 cut(s) 74, 191, 242, 448
Ppu21I YACGTR 2 cut(s) 184, 1115
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 611
PshBI ATTAAT 1 cut(s) 1137
Psp124BI GAGCTC 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 3 cut(s) 72, 156, 928
PspCI CACGTG 2 cut(s) 184, 1115
PspFI CCCAGC 2 cut(s) 209, 707
PspGI CCWGG 3 cut(s) 72, 156, 928
PspN4I GGNNCC 3 cut(s) 25, 162, 1183
PspPI GGNCC 6 cut(s) 23, 160, 601, 613, 685, 1079
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 2 cut(s) 803, 1309
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 520, 530
RsaNI GTAC 2 cut(s) 519, 529
RseI CAYNNNNRTG 2 cut(s) 512, 717
Rsr2I CGGWCCG 1 cut(s) 601
RsrII CGGWCCG 1 cut(s) 601
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 6 cut(s) 624, 783, 839, 1046, 1137, 1253
SatI GCNGC 2 cut(s) 150, 153
Sau3AI GATC 5 cut(s) 109, 205, 803, 1233, 1309
Sau96I GGNCC 6 cut(s) 23, 160, 601, 613, 685, 1079
SchI GAGTC 4 cut(s) 74, 191, 242, 449
ScrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
SduI GDGCHC 2 cut(s) 505, 962
SexAI ACCWGGT 1 cut(s) 928
SfaNI GCATC 4 cut(s) 39, 342, 375, 1023
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 5 cut(s) 23, 160, 601, 613, 685
SmiMI CAYNNNNRTG 2 cut(s) 512, 717
Sse9I AATT 8 cut(s) 297, 349, 566, 575, 951, 1019, 1049, 1190
SsiI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 616, 810
SspI AATATT 1 cut(s) 883
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 5 cut(s) 11, 72, 141, 156, 928
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 2 cut(s) 1153, 1249
TaiI ACGT 6 cut(s) 186, 317, 425, 512, 908, 1117
TaqI TCGA 5 cut(s) 99, 135, 174, 354, 425
TaqII GACCGA 1 cut(s) 589
TasI AATT 8 cut(s) 297, 349, 566, 575, 951, 1019, 1049, 1190
TatI WGTACW 2 cut(s) 518, 528
TauI GCSGC 2 cut(s) 152, 155
TfiI GAWTC 1 cut(s) 1109
Tru1I TTAA 6 cut(s) 624, 783, 839, 1046, 1137, 1253
Tru9I TTAA 6 cut(s) 624, 783, 839, 1046, 1137, 1253
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 57, 460, 568, 756, 1184
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 5 cut(s) 23, 160, 601, 613, 685
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 2 cut(s) 575, 1190
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.